Wall clock time and date at job start Sat Mar 6 2021 13:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.46870 * 2 1 4 4 C 1.50702 * 109.47020 * 119.99585 * 2 1 3 5 5 C 1.38340 * 119.87093 * 245.23393 * 4 2 1 6 6 C 1.37999 * 120.12302 * 180.23609 * 5 4 2 7 7 C 1.39407 * 119.87420 * 359.51100 * 6 5 4 8 8 C 1.48277 * 120.12874 * 180.28110 * 7 6 5 9 9 C 1.39499 * 119.97388 * 359.72242 * 8 7 6 10 10 C 1.37671 * 120.02476 * 179.72734 * 9 8 7 11 11 C 1.39708 * 119.97321 * 0.54966 * 10 9 8 12 12 C 1.47717 * 120.02513 * 179.69917 * 11 10 9 13 13 O 1.21574 * 120.00020 * 180.02562 * 12 11 10 14 14 N 1.34771 * 120.00176 * 0.02910 * 12 11 10 15 15 C 1.46495 * 120.00309 * 179.97438 * 14 12 11 16 16 H 1.08998 * 112.84874 * 334.66376 * 15 14 12 17 17 C 1.53786 * 113.61678 * 105.86001 * 15 14 12 18 18 C 1.54052 * 86.98546 * 89.16342 * 17 15 14 19 19 H 1.08999 * 113.68645 * 270.87198 * 18 17 15 20 20 C 1.50694 * 113.61996 * 139.97963 * 18 17 15 21 21 C 1.38325 * 120.00824 * 142.50221 * 20 18 17 22 22 Cl 1.73603 * 120.01512 * 359.97438 * 21 20 18 23 23 C 1.38376 * 119.97371 * 179.97438 * 21 20 18 24 24 C 1.38189 * 119.98911 * 359.97438 * 23 21 20 25 25 C 1.38265 * 120.01268 * 0.02838 * 24 23 21 26 26 C 1.38218 * 120.02244 * 359.69658 * 25 24 23 27 27 C 1.53781 * 87.07679 * 25.43210 * 18 17 15 28 28 C 1.39713 * 119.95000 * 359.72446 * 11 10 9 29 29 C 1.37667 * 119.97584 * 0.02562 * 28 11 10 30 30 C 1.39407 * 119.74230 * 0.25342 * 7 6 5 31 31 C 1.37995 * 119.87227 * 0.02562 * 30 7 6 32 32 H 0.96696 * 113.99998 * 300.00525 * 1 2 3 33 33 H 1.08994 * 109.47437 * 239.99870 * 2 1 3 34 34 H 1.48498 * 109.99911 * 178.68151 * 3 2 1 35 35 H 1.48497 * 109.99973 * 299.99492 * 3 2 1 36 36 H 1.07998 * 119.93673 * 0.02562 * 5 4 2 37 37 H 1.08002 * 120.06557 * 179.79370 * 6 5 4 38 38 H 1.08000 * 119.99011 * 359.97438 * 9 8 7 39 39 H 1.07996 * 120.01226 * 180.27777 * 10 9 8 40 40 H 0.97003 * 120.00066 * 359.97438 * 14 12 11 41 41 H 1.09000 * 113.61013 * 203.66560 * 17 15 14 42 42 H 1.08999 * 113.61175 * 334.56504 * 17 15 14 43 43 H 1.08007 * 120.00225 * 180.02562 * 23 21 20 44 44 H 1.08003 * 119.99427 * 180.02562 * 24 23 21 45 45 H 1.07994 * 119.98590 * 180.02562 * 25 24 23 46 46 H 1.08004 * 119.99402 * 180.30167 * 26 25 24 47 47 H 1.09004 * 113.61555 * 220.02094 * 27 18 17 48 48 H 1.09000 * 113.68969 * 89.13307 * 27 18 17 49 49 H 1.07993 * 120.01088 * 180.02562 * 28 11 10 50 50 H 1.07998 * 119.98628 * 179.97438 * 29 28 11 51 51 H 1.08002 * 120.05807 * 180.02562 * 30 7 6 52 52 H 1.08004 * 119.93672 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6348 -0.0080 2.1926 6 6 3.1014 -0.6542 3.3191 7 6 2.8538 -2.0153 3.4915 8 6 3.3471 -2.7140 4.7027 9 6 4.0654 -2.0101 5.6694 10 6 4.5191 -2.6565 6.7970 11 6 4.2698 -4.0205 6.9676 12 6 4.7618 -4.7167 8.1739 13 8 4.5450 -5.9038 8.3216 14 7 5.4510 -4.0359 9.1109 15 6 5.9385 -4.7262 10.3075 16 1 5.3503 -5.6097 10.5556 17 6 7.4554 -4.9788 10.2981 18 6 7.6072 -3.5995 10.9670 19 1 7.7010 -2.7769 10.2580 20 6 8.6580 -3.5643 12.0465 21 6 9.4552 -2.4443 12.1997 22 17 9.2460 -1.0790 11.1480 23 6 10.4196 -2.4125 13.1915 24 6 10.5854 -3.4993 14.0287 25 6 9.7883 -4.6186 13.8751 26 6 8.8211 -4.6487 12.8883 27 6 6.1788 -3.7902 11.5038 28 6 3.5552 -4.7258 5.9960 29 6 3.0981 -4.0762 4.8716 30 6 2.1401 -2.7168 2.5209 31 6 1.6834 -2.0612 1.3957 32 1 -0.3933 0.4418 0.7650 33 1 1.7924 -0.5138 -0.8899 34 1 3.5345 1.7704 0.0321 35 1 1.5615 2.4679 -1.2085 36 1 2.8221 1.0474 2.0602 37 1 3.6533 -0.1057 4.0681 38 1 4.2623 -0.9567 5.5351 39 1 5.0713 -2.1103 7.5474 40 1 5.6243 -3.0888 8.9929 41 1 7.7637 -5.8087 10.9339 42 1 7.8833 -5.0297 9.2969 43 1 11.0420 -1.5381 13.3118 44 1 11.3378 -3.4745 14.8032 45 1 9.9180 -5.4676 14.5299 46 1 8.1954 -5.5213 12.7718 47 1 5.5767 -2.8820 11.4754 48 1 6.1374 -4.2954 12.4687 49 1 3.3616 -5.7801 6.1270 50 1 2.5460 -4.6212 4.1202 51 1 1.9451 -3.7712 2.6494 52 1 1.1308 -2.6037 0.6429 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:14:04 Heat of formation + Delta-G solvation = 41.460817 kcal Electronic energy + Delta-G solvation = -34851.748837 eV Core-core repulsion = 30160.207747 eV Total energy + Delta-G solvation = -4691.541090 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.128 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.81018 -41.10106 -40.50586 -39.43572 -38.67549 -37.50729 -37.40593 -34.90118 -33.90004 -32.59700 -31.94843 -31.66504 -31.49288 -30.66893 -27.21540 -26.74565 -26.17445 -24.65664 -24.55669 -23.68868 -22.79965 -22.51278 -22.31992 -21.36403 -20.22813 -19.24984 -18.55317 -18.21426 -17.68391 -17.30680 -16.82854 -16.75187 -16.45080 -16.30608 -16.13417 -16.05746 -15.74278 -15.41659 -15.31833 -15.15267 -14.93842 -14.90138 -14.78381 -14.73740 -14.41167 -14.36280 -14.26810 -13.97234 -13.61443 -13.55120 -13.39854 -13.16174 -12.96026 -12.74533 -12.68345 -12.55708 -12.47256 -12.16077 -12.10883 -11.94866 -11.78428 -11.60882 -11.52939 -11.26534 -11.13648 -10.77818 -10.41663 -10.17528 -10.07486 -9.96363 -9.83271 -9.58014 -9.08368 -5.00948 -0.70323 0.18414 0.29021 0.33883 0.39828 0.49061 1.17117 1.30595 1.63152 1.76139 1.96718 1.99529 2.59274 2.63330 3.00124 3.37931 3.40145 3.53926 3.58334 3.60928 3.64583 3.70894 3.77093 3.85499 3.87795 3.94693 4.00476 4.05508 4.10389 4.16545 4.24400 4.28899 4.36479 4.39327 4.40283 4.46722 4.60849 4.63831 4.66355 4.71835 4.75187 4.80613 4.88115 4.90101 4.91500 4.97186 5.00811 5.08014 5.09967 5.12961 5.19810 5.26000 5.30166 5.39914 5.41312 5.49592 5.49714 5.57955 5.64852 5.78687 5.86906 5.92578 6.41389 6.75634 7.09233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.077 4.077 3 Si 0.778 3.222 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.101 4.101 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.118 4.118 10 C -0.074 4.074 11 C -0.152 4.152 12 C 0.560 3.440 13 O -0.578 6.578 14 N -0.696 5.696 15 C 0.116 3.884 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.076 4.076 19 H 0.105 0.895 20 C -0.070 4.070 21 C -0.049 4.049 22 Cl -0.074 7.074 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.121 4.121 28 C -0.070 4.070 29 C -0.125 4.125 30 C -0.113 4.113 31 C -0.104 4.104 32 H 0.395 0.605 33 H 0.104 0.896 34 H -0.284 1.284 35 H -0.302 1.302 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.413 0.587 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.139 0.861 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.127 0.873 50 H 0.143 0.857 51 H 0.137 0.863 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 4.739 4.592 6.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.187 4.187 3 Si 0.684 3.316 4 C -0.120 4.120 5 C -0.134 4.134 6 C -0.119 4.119 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.135 4.135 10 C -0.093 4.093 11 C -0.155 4.155 12 C 0.349 3.651 13 O -0.459 6.459 14 N -0.347 5.347 15 C 0.010 3.990 16 H 0.109 0.891 17 C -0.178 4.178 18 C -0.094 4.094 19 H 0.123 0.877 20 C -0.070 4.070 21 C -0.076 4.076 22 Cl -0.045 7.045 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.130 4.130 27 C -0.159 4.159 28 C -0.089 4.089 29 C -0.142 4.142 30 C -0.131 4.131 31 C -0.122 4.122 32 H 0.245 0.755 33 H 0.122 0.878 34 H -0.211 1.211 35 H -0.231 1.231 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.252 0.748 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.166 0.834 46 H 0.165 0.835 47 H 0.105 0.895 48 H 0.126 0.874 49 H 0.145 0.855 50 H 0.161 0.839 51 H 0.154 0.846 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.633 4.311 3.666 5.890 hybrid contribution 0.224 -0.427 -0.621 0.786 sum 1.857 3.884 3.045 5.273 Atomic orbital electron populations 1.86476 1.17252 1.82198 1.50513 1.25229 0.85300 1.10986 0.97185 0.93757 0.77830 0.75134 0.84859 1.20542 0.99450 0.94975 0.96993 1.21170 0.98173 1.00271 0.93803 1.21516 0.98995 0.93242 0.98115 1.18938 0.99151 0.94139 0.93791 1.19147 0.96212 0.93220 0.93633 1.21490 0.97510 1.01614 0.92886 1.21474 0.97533 0.92200 0.98076 1.19975 1.04295 0.95368 0.95856 1.18534 0.77172 0.86158 0.83257 1.90773 1.59230 1.16965 1.78923 1.45494 1.55298 1.13633 1.20297 1.21872 0.95125 0.96800 0.85170 0.89055 1.23606 0.95513 0.97184 1.01479 1.21733 0.92995 0.99072 0.95598 0.87698 1.19691 0.96785 0.92773 0.97798 1.21030 1.00294 0.90112 0.96140 1.98358 1.96794 1.43529 1.65845 1.21301 0.97602 1.00422 0.94689 1.21442 1.00071 0.92725 0.99297 1.21591 0.94886 0.98940 0.98008 1.21257 0.98858 0.98128 0.94731 1.23361 0.94479 1.00254 0.97764 1.21243 0.94656 1.00423 0.92590 1.21365 1.00772 0.94149 0.97951 1.21497 0.97328 1.00761 0.93514 1.21070 0.99136 0.94233 0.97809 0.75468 0.87841 1.21131 1.23068 0.83250 0.82648 0.82153 0.82621 0.74835 0.87795 0.91638 0.84321 0.83372 0.83434 0.83520 0.89468 0.87396 0.85489 0.83907 0.84558 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.00 12.83 -148.98 -1.91 -1.91 16 2 C -0.08 0.08 2.80 71.24 0.20 0.28 16 3 Si 0.78 -2.40 29.79 68.60 2.04 -0.36 16 4 C -0.12 0.11 5.36 -19.82 -0.11 0.00 16 5 C -0.12 0.42 8.65 22.24 0.19 0.62 16 6 C -0.10 0.37 9.43 22.49 0.21 0.58 16 7 C -0.06 0.04 5.88 -20.04 -0.12 -0.08 16 8 C -0.02 0.01 5.88 -20.00 -0.12 -0.11 16 9 C -0.12 0.44 9.41 22.44 0.21 0.65 16 10 C -0.07 0.25 9.52 22.49 0.21 0.46 16 11 C -0.15 -0.42 5.88 -20.06 -0.12 -0.53 16 12 C 0.56 3.27 7.77 86.75 0.67 3.94 16 13 O -0.58 -8.28 15.95 -3.95 -0.06 -8.34 16 14 N -0.70 0.56 5.21 -443.03 -2.31 -1.75 16 15 C 0.12 -0.11 4.29 45.52 0.20 0.09 16 16 H 0.09 0.26 7.50 -2.39 -0.02 0.24 16 17 C -0.14 0.24 7.27 31.21 0.23 0.47 16 18 C -0.08 0.23 3.66 -10.92 -0.04 0.19 16 19 H 0.10 -0.31 6.57 -2.39 -0.02 -0.33 16 20 C -0.07 0.05 5.29 -19.84 -0.11 -0.05 16 21 C -0.05 -0.05 6.31 22.32 0.14 0.09 16 22 Cl -0.07 -0.07 27.16 -2.72 -0.07 -0.14 16 23 C -0.12 0.02 9.83 22.29 0.22 0.24 16 24 C -0.12 0.27 10.05 22.26 0.22 0.50 16 25 C -0.12 0.36 10.05 22.27 0.22 0.59 16 26 C -0.11 0.29 8.60 22.27 0.19 0.48 16 27 C -0.12 0.56 7.28 31.12 0.23 0.79 16 28 C -0.07 -0.29 9.58 22.49 0.22 -0.07 16 29 C -0.12 -0.14 9.41 22.44 0.21 0.07 16 30 C -0.11 -0.01 9.43 22.49 0.21 0.21 16 31 C -0.10 -0.07 9.67 22.23 0.21 0.15 16 32 H 0.40 -3.23 8.70 -74.06 -0.64 -3.87 16 33 H 0.10 0.06 7.96 -2.39 -0.02 0.04 16 34 H -0.28 -0.41 7.11 99.48 0.71 0.30 16 35 H -0.30 -1.50 7.11 99.48 0.71 -0.80 16 36 H 0.15 -1.25 4.89 -2.91 -0.01 -1.26 16 37 H 0.16 -1.43 6.19 -2.91 -0.02 -1.45 16 38 H 0.16 -1.54 6.19 -2.91 -0.02 -1.56 16 39 H 0.16 -1.53 6.39 -2.91 -0.02 -1.55 16 40 H 0.41 -2.67 6.72 -92.71 -0.62 -3.29 16 41 H 0.10 -0.34 6.33 -2.39 -0.02 -0.36 16 42 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 44 H 0.15 -0.94 8.06 -2.91 -0.02 -0.97 16 45 H 0.15 -1.07 8.06 -2.91 -0.02 -1.09 16 46 H 0.15 -0.89 6.68 -2.91 -0.02 -0.91 16 47 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 48 H 0.11 -0.63 7.72 -2.39 -0.02 -0.65 16 49 H 0.13 0.73 7.64 -2.91 -0.02 0.71 16 50 H 0.14 -0.27 6.19 -2.91 -0.02 -0.29 16 51 H 0.14 -0.33 6.19 -2.91 -0.02 -0.35 16 52 H 0.13 0.04 8.06 -2.91 -0.02 0.01 16 Total: 0.00 -22.27 436.81 1.07 -21.20 By element: Atomic # 1 Polarization: -18.02 SS G_CDS: -0.22 Total: -18.24 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 3.60 Total: 9.53 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -2.31 Total: -1.75 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -1.97 Total: -10.25 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.04 Total: -0.36 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.07 Total: -0.14 kcal Total: -22.27 1.07 -21.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.665 kcal (2) G-P(sol) polarization free energy of solvation -22.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds