Wall clock time and date at job start Sat Mar 6 2021 13:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47236 * 2 1 4 4 C 1.50704 * 109.47273 * 120.00161 * 2 1 3 5 5 C 1.38556 * 120.32207 * 244.99578 * 4 2 1 6 6 N 1.31530 * 120.90234 * 180.02562 * 5 4 2 7 7 C 1.32715 * 121.64182 * 0.02562 * 6 5 4 8 8 C 1.48170 * 119.72223 * 180.02562 * 7 6 5 9 9 O 1.21517 * 119.99731 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00121 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00157 * 179.97438 * 10 8 7 12 12 H 1.08996 * 112.84800 * 23.80973 * 11 10 8 13 13 C 1.53777 * 113.61160 * 155.00230 * 11 10 8 14 14 C 1.53781 * 87.08336 * 89.20358 * 13 11 10 15 15 H 1.09002 * 113.61228 * 270.88201 * 14 13 11 16 16 C 1.50701 * 113.61772 * 140.06093 * 14 13 11 17 17 C 1.38331 * 120.00737 * 121.52878 * 16 14 13 18 18 Cl 1.73607 * 120.01151 * 359.95732 * 17 16 14 19 19 C 1.38373 * 119.97597 * 179.97438 * 17 16 14 20 20 C 1.38194 * 119.98307 * 0.02562 * 19 17 16 21 21 C 1.38257 * 120.01650 * 359.97438 * 20 19 17 22 22 C 1.38221 * 120.02345 * 359.74682 * 21 20 19 23 23 C 1.53775 * 113.69461 * 252.53673 * 11 10 8 24 24 C 1.39308 * 120.55356 * 0.27106 * 7 6 5 25 25 C 1.38590 * 119.06113 * 359.44038 * 24 7 6 26 26 H 0.96704 * 114.00131 * 299.99582 * 1 2 3 27 27 H 1.09000 * 109.47238 * 239.99952 * 2 1 3 28 28 H 1.48505 * 109.99935 * 300.00389 * 3 2 1 29 29 H 1.48500 * 110.00081 * 61.32098 * 3 2 1 30 30 H 1.07999 * 119.55129 * 0.02562 * 5 4 2 31 31 H 0.97006 * 119.99979 * 0.02562 * 10 8 7 32 32 H 1.08997 * 113.61941 * 334.65065 * 13 11 10 33 33 H 1.09005 * 113.61136 * 203.75230 * 13 11 10 34 34 H 1.07999 * 120.00743 * 179.97438 * 19 17 16 35 35 H 1.08007 * 119.98825 * 179.97438 * 20 19 17 36 36 H 1.07998 * 119.98911 * 180.02562 * 21 20 19 37 37 H 1.08002 * 119.99250 * 180.27676 * 22 21 20 38 38 H 1.08993 * 113.61636 * 156.31970 * 23 11 10 39 39 H 1.09008 * 113.61006 * 25.42212 * 23 11 10 40 40 H 1.08003 * 120.47070 * 179.69996 * 24 7 6 41 41 H 1.08002 * 120.75941 * 180.27696 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.6411 -0.0173 2.1976 6 7 3.0853 -0.6260 3.2757 7 6 2.8746 -1.9201 3.4812 8 6 3.3938 -2.5627 4.7112 9 8 3.2042 -3.7473 4.9042 10 7 4.0772 -1.8335 5.6154 11 6 4.5900 -2.4687 6.8319 12 1 4.7325 -3.5435 6.7203 13 6 5.8042 -1.7462 7.4390 14 6 4.8008 -0.9014 8.2419 15 1 4.4760 0.0005 7.7231 16 6 5.2339 -0.6365 9.6608 17 6 5.3820 0.6643 10.1075 18 17 5.0703 1.9921 9.0334 19 6 5.7792 0.9067 11.4107 20 6 6.0280 -0.1507 12.2649 21 6 5.8797 -1.4506 11.8179 22 6 5.4775 -1.6933 10.5180 23 6 3.8204 -2.0781 8.1045 24 6 2.1739 -2.6805 2.5477 25 6 1.6887 -2.0641 1.4051 26 1 -0.3934 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5613 2.4679 -1.2085 29 1 1.5879 2.4585 1.2242 30 1 2.8323 1.0373 2.0646 31 1 4.2288 -0.8879 5.4612 32 1 6.3775 -1.1700 6.7129 33 1 6.4291 -2.3885 8.0596 34 1 5.8954 1.9221 11.7598 35 1 6.3384 0.0385 13.2820 36 1 6.0739 -2.2766 12.4860 37 1 5.3575 -2.7089 10.1706 38 1 3.9028 -2.8111 8.9069 39 1 2.7920 -1.7698 7.9155 40 1 2.0074 -3.7346 2.7140 41 1 1.1380 -2.6265 0.6656 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:14:26 Heat of formation + Delta-G solvation = 25.046808 kcal Electronic energy + Delta-G solvation = -26295.554816 eV Core-core repulsion = 22361.855850 eV Total energy + Delta-G solvation = -3933.698966 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03633 -41.33024 -40.19490 -38.85877 -38.00246 -37.41045 -34.87748 -33.68804 -32.99746 -31.72418 -31.66250 -28.02517 -26.74510 -26.19674 -25.06181 -24.15225 -23.57692 -22.61846 -22.02887 -20.21088 -19.37038 -18.71763 -18.22286 -17.77944 -17.04462 -16.71921 -16.61091 -16.44242 -16.34491 -16.15583 -16.06990 -15.34148 -15.18338 -14.87649 -14.76912 -14.54393 -14.48488 -14.39738 -14.20576 -13.53147 -13.49438 -13.38598 -12.96711 -12.70166 -12.64252 -12.48018 -12.16999 -12.14568 -11.79034 -11.57816 -11.43029 -11.27075 -11.09087 -10.70252 -10.67930 -10.41664 -10.12035 -9.83161 -9.58245 -4.93519 -0.62165 0.06603 0.18337 0.29065 1.17323 1.23270 1.50012 1.57975 1.88878 1.95463 2.62420 2.64190 2.91062 3.32693 3.39283 3.48770 3.57984 3.61808 3.68048 3.76736 3.86096 3.91282 3.94148 4.10452 4.11417 4.16835 4.39256 4.40393 4.46665 4.58188 4.59859 4.71614 4.74716 4.78077 4.87573 4.89636 4.97045 4.97946 5.00814 5.10633 5.30317 5.36078 5.40345 5.49409 5.56402 5.87191 6.23952 6.40862 6.58752 7.00072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.077 4.077 3 Si 0.764 3.236 4 C -0.139 4.139 5 C 0.099 3.901 6 N -0.461 5.461 7 C 0.064 3.936 8 C 0.572 3.428 9 O -0.563 6.563 10 N -0.684 5.684 11 C 0.113 3.887 12 H 0.099 0.901 13 C -0.121 4.121 14 C -0.078 4.078 15 H 0.100 0.900 16 C -0.070 4.070 17 C -0.051 4.051 18 Cl -0.077 7.077 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.052 4.052 26 H 0.388 0.612 27 H 0.138 0.862 28 H -0.299 1.299 29 H -0.276 1.276 30 H 0.184 0.816 31 H 0.418 0.582 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.150 0.850 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 1.106 0.581 3.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.186 4.186 3 Si 0.669 3.331 4 C -0.141 4.141 5 C -0.061 4.061 6 N -0.172 5.172 7 C -0.074 4.074 8 C 0.358 3.642 9 O -0.441 6.441 10 N -0.334 5.334 11 C 0.008 3.992 12 H 0.117 0.883 13 C -0.159 4.159 14 C -0.096 4.096 15 H 0.118 0.882 16 C -0.070 4.070 17 C -0.078 4.078 18 Cl -0.048 7.048 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.175 4.175 24 C -0.136 4.136 25 C -0.077 4.077 26 H 0.238 0.762 27 H 0.156 0.844 28 H -0.227 1.227 29 H -0.202 1.202 30 H 0.200 0.800 31 H 0.256 0.744 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.168 0.832 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.219 1.348 0.761 3.572 hybrid contribution -1.686 0.122 -0.231 1.706 sum 1.533 1.471 0.530 2.190 Atomic orbital electron populations 1.86617 1.17940 1.80348 1.50240 1.25194 0.83717 1.11909 0.97826 0.94074 0.90144 0.71803 0.77116 1.21673 0.98758 0.95533 0.98148 1.23036 0.93781 1.00880 0.88397 1.67515 1.18606 1.09081 1.22040 1.21073 0.99706 0.90858 0.95748 1.18077 0.77869 0.85609 0.82647 1.90787 1.59222 1.16193 1.77922 1.45493 1.54183 1.13950 1.19806 1.21956 0.95417 0.98450 0.83342 0.88266 1.23374 0.95520 0.98200 0.98780 1.21677 0.97631 0.98716 0.91597 0.88231 1.19692 0.99659 0.91162 0.96537 1.21060 1.05616 0.88671 0.92409 1.98363 1.94337 1.46877 1.65208 1.21295 0.99734 1.01215 0.91772 1.21449 0.99266 0.92192 1.00611 1.21601 0.97796 0.97745 0.96159 1.21260 0.98886 0.99260 0.93436 1.23552 0.98388 0.97732 0.97868 1.22294 0.95531 1.02331 0.93400 1.21757 0.95418 0.94088 0.96455 0.76248 0.84431 1.22665 1.20185 0.79976 0.74433 0.89875 0.86976 0.84376 0.83293 0.83246 0.83284 0.87311 0.91781 0.83202 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.83 12.84 -148.98 -1.91 -1.09 16 2 C -0.08 0.39 2.82 71.24 0.20 0.59 16 3 Si 0.76 -4.36 29.91 68.60 2.05 -2.31 16 4 C -0.14 0.44 5.37 -19.69 -0.11 0.33 16 5 C 0.10 -0.21 9.84 84.81 0.83 0.63 16 6 N -0.46 -0.93 9.54 -184.91 -1.76 -2.69 16 7 C 0.06 0.28 6.75 41.91 0.28 0.56 16 8 C 0.57 3.98 7.81 86.88 0.68 4.66 16 9 O -0.56 -7.29 15.92 -3.77 -0.06 -7.35 16 10 N -0.68 -1.49 5.26 -442.62 -2.33 -3.82 16 11 C 0.11 0.02 4.32 45.51 0.20 0.22 16 12 H 0.10 0.25 7.46 -2.39 -0.02 0.23 16 13 C -0.12 0.37 7.29 31.12 0.23 0.60 16 14 C -0.08 0.08 3.65 -11.01 -0.04 0.04 16 15 H 0.10 0.03 6.55 -2.39 -0.02 0.02 16 16 C -0.07 -0.03 5.29 -19.84 -0.11 -0.14 16 17 C -0.05 -0.13 6.31 22.32 0.14 0.01 16 18 Cl -0.08 -0.24 27.15 -2.72 -0.07 -0.32 16 19 C -0.12 -0.10 9.83 22.29 0.22 0.12 16 20 C -0.12 0.21 10.04 22.26 0.22 0.43 16 21 C -0.12 0.33 10.05 22.27 0.22 0.55 16 22 C -0.11 0.24 8.55 22.26 0.19 0.43 16 23 C -0.14 0.11 7.26 31.12 0.23 0.34 16 24 C -0.11 -0.25 9.63 22.61 0.22 -0.03 16 25 C -0.05 0.09 9.83 22.45 0.22 0.31 16 26 H 0.39 -2.62 8.70 -74.05 -0.64 -3.26 16 27 H 0.14 -1.01 7.96 -2.39 -0.02 -1.03 16 28 H -0.30 -0.75 7.11 99.48 0.71 -0.04 16 29 H -0.28 0.61 7.01 99.48 0.70 1.31 16 30 H 0.18 -1.24 4.86 -2.91 -0.01 -1.25 16 31 H 0.42 -0.05 8.03 -92.70 -0.74 -0.80 16 32 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.11 -0.58 7.66 -2.38 -0.02 -0.60 16 34 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 35 H 0.15 -0.89 8.06 -2.91 -0.02 -0.91 16 36 H 0.15 -1.08 8.06 -2.91 -0.02 -1.11 16 37 H 0.15 -0.91 6.72 -2.91 -0.02 -0.93 16 38 H 0.11 -0.36 6.39 -2.39 -0.02 -0.37 16 39 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.15 0.32 7.64 -2.91 -0.02 0.30 16 41 H 0.16 -0.81 8.06 -2.91 -0.02 -0.84 16 Total: 0.00 -17.08 359.88 -0.51 -17.59 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: -0.26 Total: -9.65 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 3.83 Total: 9.64 kcal Atomic # 7 Polarization: -2.42 SS G_CDS: -4.09 Total: -6.51 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -1.97 Total: -8.44 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.05 Total: -2.31 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.07 Total: -0.32 kcal Total: -17.08 -0.51 -17.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.636 kcal (2) G-P(sol) polarization free energy of solvation -17.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds