Wall clock time and date at job start Sat Mar 6 2021 13:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47327 * 2 1 4 4 C 1.50702 * 109.47021 * 120.00171 * 2 1 3 5 5 C 1.32699 * 124.68448 * 65.30480 * 4 2 1 6 6 C 1.44506 * 113.09659 * 180.19342 * 5 4 2 7 7 C 1.47038 * 123.49356 * 179.76340 * 6 5 4 8 8 O 1.21660 * 120.00374 * 179.73061 * 7 6 5 9 9 N 1.34782 * 120.00008 * 359.73007 * 7 6 5 10 10 C 1.46497 * 120.00306 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.90745 * 23.75020 * 10 9 7 12 12 C 1.53778 * 113.61643 * 154.99949 * 10 9 7 13 13 C 1.53783 * 87.07960 * 89.11721 * 12 10 9 14 14 H 1.08998 * 113.61692 * 270.80090 * 13 12 10 15 15 C 1.50701 * 113.61112 * 139.98346 * 13 12 10 16 16 C 1.38335 * 120.00592 * 120.00479 * 15 13 12 17 17 Cl 1.73599 * 120.01202 * 0.02562 * 16 15 13 18 18 C 1.38369 * 119.97082 * 180.29680 * 16 15 13 19 19 C 1.38199 * 119.98895 * 359.42034 * 18 16 15 20 20 C 1.38264 * 120.01177 * 0.59894 * 19 18 16 21 21 C 1.38224 * 120.02372 * 359.67909 * 20 19 18 22 22 C 1.53774 * 113.61724 * 252.50042 * 10 9 7 23 23 C 1.36229 * 113.01512 * 359.49658 * 6 5 4 24 24 Cl 1.73598 * 124.60441 * 180.28634 * 23 6 5 25 25 S 1.70443 * 110.78963 * 0.26782 * 23 6 5 26 26 H 0.96692 * 113.99596 * 299.99955 * 1 2 3 27 27 H 1.09005 * 109.47082 * 239.99963 * 2 1 3 28 28 H 1.48502 * 110.00277 * 178.68242 * 3 2 1 29 29 H 1.48495 * 110.00231 * 300.00172 * 3 2 1 30 30 H 1.07994 * 123.45302 * 359.95717 * 5 4 2 31 31 H 0.96996 * 119.99623 * 359.97438 * 9 7 6 32 32 H 1.09001 * 113.61411 * 334.57081 * 12 10 9 33 33 H 1.09001 * 113.62024 * 203.66949 * 12 10 9 34 34 H 1.08000 * 120.00704 * 179.71594 * 18 16 15 35 35 H 1.07997 * 119.99421 * 180.27338 * 19 18 16 36 36 H 1.07991 * 119.99053 * 179.69572 * 20 19 18 37 37 H 1.08004 * 119.99298 * 179.97438 * 21 20 19 38 38 H 1.08999 * 113.61819 * 156.33370 * 22 10 9 39 39 H 1.09004 * 113.61572 * 25.43147 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7532 -2.0010 1.4829 6 6 2.3356 -2.4188 2.7377 7 6 2.2685 -3.7976 3.2441 8 8 2.7859 -4.0806 4.3082 9 7 1.6339 -4.7479 2.5295 10 6 1.5675 -6.1218 3.0338 11 1 1.6785 -6.1821 4.1165 12 6 0.3699 -6.9197 2.4919 13 6 1.2772 -7.3363 1.3222 14 1 1.2461 -6.6469 0.4785 15 6 1.1065 -8.7754 0.9087 16 6 0.7054 -9.0822 -0.3791 17 17 0.3992 -7.8097 -1.5196 18 6 0.5430 -10.4036 -0.7562 19 6 0.7931 -11.4163 0.1502 20 6 1.1936 -11.1090 1.4374 21 6 1.3505 -9.7891 1.8164 22 6 2.4685 -7.1038 2.2666 23 6 2.9581 -1.4041 3.4000 24 17 3.7630 -1.5723 4.9289 25 16 2.8398 0.0528 2.5235 26 1 -0.3932 0.4417 0.7650 27 1 1.7924 -0.5139 -0.8900 28 1 3.5347 1.7702 0.0321 29 1 1.5616 2.4678 -1.2084 30 1 1.2238 -2.6696 0.8204 31 1 1.2210 -4.5221 1.6813 32 1 -0.4710 -6.2948 2.1911 33 1 0.0732 -7.7507 3.1319 34 1 0.2254 -10.6436 -1.7602 35 1 0.6706 -12.4478 -0.1453 36 1 1.3842 -11.9006 2.1469 37 1 1.6630 -9.5496 2.8221 38 1 2.7457 -7.9851 2.8449 39 1 3.3219 -6.6275 1.7838 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:15:06 Heat of formation + Delta-G solvation = 17.438002 kcal Electronic energy + Delta-G solvation = -27085.955649 eV Core-core repulsion = 22946.705105 eV Total energy + Delta-G solvation = -4139.250544 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.014 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71851 -40.63931 -39.24197 -38.61524 -37.94719 -37.42027 -36.95630 -34.60719 -31.93710 -31.67500 -31.51779 -27.14840 -26.74267 -26.69114 -25.32823 -23.68708 -22.59289 -22.29443 -20.87651 -20.18058 -19.44328 -18.34436 -17.92244 -17.72542 -17.09156 -16.67870 -16.43434 -16.34353 -16.05127 -15.78085 -15.69786 -15.21062 -14.92117 -14.80098 -14.72977 -14.47985 -14.43697 -14.28431 -14.07929 -13.50326 -13.36853 -12.99005 -12.90683 -12.69293 -12.60888 -12.48576 -12.38849 -12.18437 -12.14659 -11.88473 -11.76979 -11.52914 -11.26706 -10.98868 -10.58897 -10.20505 -9.91372 -9.84284 -9.65660 -9.58668 -5.15160 -0.64697 -0.20409 0.17444 0.28116 0.46333 0.69790 1.03107 1.16062 1.17461 1.57034 1.89199 2.08711 2.13682 2.62405 3.26671 3.40042 3.58201 3.59374 3.65659 3.80389 3.85205 3.88177 3.94777 4.09754 4.16351 4.34024 4.38598 4.39407 4.43012 4.62988 4.71313 4.74796 4.75522 4.83298 4.89408 4.94933 4.97240 5.00454 5.11537 5.29274 5.41062 5.48751 5.58396 5.86088 6.40952 6.69410 7.10401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.021 4.021 3 Si 0.716 3.284 4 C -0.229 4.229 5 C -0.070 4.070 6 C -0.168 4.168 7 C 0.574 3.426 8 O -0.556 6.556 9 N -0.694 5.694 10 C 0.120 3.880 11 H 0.094 0.906 12 C -0.121 4.121 13 C -0.076 4.076 14 H 0.103 0.897 15 C -0.070 4.070 16 C -0.050 4.050 17 Cl -0.075 7.075 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.139 4.139 23 C -0.138 4.138 24 Cl 0.005 6.995 25 S 0.270 5.730 26 H 0.398 0.602 27 H 0.133 0.867 28 H -0.261 1.261 29 H -0.266 1.266 30 H 0.176 0.824 31 H 0.412 0.588 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 0.482 -1.440 3.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.134 4.134 3 Si 0.619 3.381 4 C -0.346 4.346 5 C -0.099 4.099 6 C -0.188 4.188 7 C 0.360 3.640 8 O -0.435 6.435 9 N -0.346 5.346 10 C 0.014 3.986 11 H 0.112 0.888 12 C -0.159 4.159 13 C -0.095 4.095 14 H 0.121 0.879 15 C -0.071 4.071 16 C -0.077 4.077 17 Cl -0.047 7.047 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.177 4.177 23 C -0.284 4.284 24 Cl 0.034 6.966 25 S 0.535 5.465 26 H 0.249 0.751 27 H 0.150 0.850 28 H -0.187 1.187 29 H -0.191 1.191 30 H 0.193 0.807 31 H 0.249 0.751 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.123 0.877 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.468 2.148 -1.357 2.934 hybrid contribution -0.351 -1.930 -0.760 2.104 sum -1.819 0.218 -2.117 2.799 Atomic orbital electron populations 1.86520 1.16145 1.82002 1.50463 1.24463 0.85540 1.08927 0.94492 0.94308 0.79766 0.75646 0.88411 1.24950 1.08284 0.98581 1.02822 1.21114 0.99081 0.95538 0.94139 1.20296 1.06553 0.94141 0.97791 1.17658 0.78096 0.84417 0.83800 1.90856 1.47002 1.82447 1.23228 1.45414 1.56380 1.08167 1.24617 1.21839 0.97478 0.80137 0.99144 0.88764 1.23368 0.96275 1.00007 0.96278 1.21683 0.97661 0.92228 0.97879 0.87903 1.19706 0.99163 0.96482 0.91708 1.21041 1.05521 0.89784 0.91324 1.98360 1.94351 1.51711 1.60238 1.21298 1.00565 0.90756 1.01404 1.21445 0.98650 1.00012 0.93433 1.21597 0.97875 0.97122 0.96780 1.21260 0.99564 0.91999 1.00116 1.23556 0.96637 0.99859 0.97651 1.25804 1.04517 1.02154 0.95970 1.98427 1.76266 1.97502 1.24435 1.83163 1.49745 1.04744 1.08814 0.75113 0.85024 1.18704 1.19136 0.80721 0.75076 0.89696 0.87402 0.84358 0.83333 0.83362 0.83457 0.87747 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.94 12.88 -148.98 -1.92 1.02 16 2 C -0.02 0.12 2.94 71.24 0.21 0.33 16 3 Si 0.72 -3.92 30.92 68.60 2.12 -1.80 16 4 C -0.23 0.93 5.65 24.51 0.14 1.07 16 5 C -0.07 0.20 9.75 22.70 0.22 0.42 16 6 C -0.17 -0.50 5.98 -19.84 -0.12 -0.62 16 7 C 0.57 3.51 7.79 86.55 0.67 4.18 16 8 O -0.56 -7.50 14.51 -4.22 -0.06 -7.56 16 9 N -0.69 0.08 5.24 -443.66 -2.33 -2.25 16 10 C 0.12 -0.07 4.32 45.51 0.20 0.13 16 11 H 0.09 0.28 7.47 -2.38 -0.02 0.26 16 12 C -0.12 0.47 7.29 31.12 0.23 0.69 16 13 C -0.08 0.16 3.64 -11.01 -0.04 0.12 16 14 H 0.10 -0.18 6.57 -2.39 -0.02 -0.20 16 15 C -0.07 0.00 5.29 -19.84 -0.10 -0.11 16 16 C -0.05 -0.10 6.31 22.32 0.14 0.04 16 17 Cl -0.08 -0.16 27.16 -2.72 -0.07 -0.23 16 18 C -0.12 -0.07 9.83 22.29 0.22 0.15 16 19 C -0.12 0.21 10.05 22.27 0.22 0.44 16 20 C -0.12 0.31 10.05 22.27 0.22 0.53 16 21 C -0.11 0.23 8.61 22.27 0.19 0.42 16 22 C -0.14 0.18 7.25 31.12 0.23 0.41 16 23 C -0.14 -0.54 6.87 67.35 0.46 -0.08 16 24 Cl 0.00 0.04 27.20 -2.72 -0.07 -0.04 16 25 S 0.27 -0.67 20.19 -56.49 -1.14 -1.81 16 26 H 0.40 -5.11 8.70 -74.06 -0.64 -5.75 16 27 H 0.13 -0.83 7.96 -2.38 -0.02 -0.85 16 28 H -0.26 0.24 7.11 99.48 0.71 0.95 16 29 H -0.27 -0.26 7.11 99.48 0.71 0.45 16 30 H 0.18 -1.27 7.10 -2.91 -0.02 -1.29 16 31 H 0.41 -2.06 7.24 -92.71 -0.67 -2.73 16 32 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.11 -0.55 7.72 -2.39 -0.02 -0.57 16 34 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 35 H 0.15 -0.88 8.06 -2.91 -0.02 -0.90 16 36 H 0.15 -1.02 8.06 -2.91 -0.02 -1.05 16 37 H 0.15 -0.83 6.66 -2.91 -0.02 -0.85 16 38 H 0.10 -0.31 6.31 -2.39 -0.02 -0.33 16 39 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 Total: 0.00 -17.44 370.13 -0.52 -17.96 By element: Atomic # 1 Polarization: -13.29 SS G_CDS: -0.14 Total: -13.43 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 3.09 Total: 8.14 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -2.33 Total: -2.25 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -1.98 Total: -6.54 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.12 Total: -1.80 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -1.14 Total: -1.81 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.15 Total: -0.27 kcal Total: -17.44 -0.52 -17.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.399 kcal (2) G-P(sol) polarization free energy of solvation -17.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds