Wall clock time and date at job start Sat Mar 6 2021 13:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46840 * 2 1 4 4 C 1.50703 * 109.47367 * 119.99515 * 2 1 3 5 5 C 1.34183 * 125.43092 * 65.00370 * 4 2 1 6 6 C 1.47027 * 105.94872 * 180.02562 * 5 4 2 7 7 C 1.47375 * 127.18861 * 180.02562 * 6 5 4 8 8 O 1.21614 * 120.00136 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99812 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99981 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.90500 * 23.74753 * 10 9 7 12 12 C 1.53781 * 113.61365 * 155.00367 * 10 9 7 13 13 C 1.53775 * 87.08210 * 89.11341 * 12 10 9 14 14 H 1.08998 * 113.61634 * 270.79568 * 13 12 10 15 15 C 1.50699 * 113.61211 * 139.98039 * 13 12 10 16 16 C 1.38333 * 120.00617 * 119.99939 * 15 13 12 17 17 Cl 1.73599 * 120.01540 * 359.97438 * 16 15 13 18 18 C 1.38380 * 119.97335 * 179.71986 * 16 15 13 19 19 C 1.38196 * 119.98523 * 0.28219 * 18 16 15 20 20 C 1.38269 * 120.01466 * 0.02562 * 19 18 16 21 21 C 1.38219 * 120.02322 * 0.02562 * 20 19 18 22 22 C 1.53784 * 87.08396 * 25.43188 * 13 12 10 23 23 C 1.36412 * 105.61828 * 0.26190 * 6 5 4 24 24 O 1.33660 * 108.39648 * 359.57502 * 23 6 5 25 25 H 0.96699 * 114.00044 * 60.00165 * 1 2 3 26 26 H 1.08997 * 109.47495 * 240.00115 * 2 1 3 27 27 H 1.48503 * 109.99994 * 59.99801 * 3 2 1 28 28 H 1.48494 * 110.00078 * 181.31570 * 3 2 1 29 29 H 1.07992 * 127.02744 * 0.02562 * 5 4 2 30 30 H 0.96997 * 120.00350 * 0.02562 * 9 7 6 31 31 H 1.08998 * 113.61649 * 334.55990 * 12 10 9 32 32 H 1.09001 * 113.68602 * 203.67637 * 12 10 9 33 33 H 1.08002 * 120.00689 * 180.25483 * 18 16 15 34 34 H 1.08003 * 119.99170 * 179.97438 * 19 18 16 35 35 H 1.07992 * 119.98515 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.99186 * 179.97438 * 21 20 19 37 37 H 1.09001 * 113.61149 * 89.11327 * 22 13 12 38 38 H 1.09000 * 113.61608 * 220.01720 * 22 13 12 39 39 H 1.08000 * 125.80189 * 179.74184 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.7552 -2.0122 1.5037 6 6 2.4121 -2.2459 2.7981 7 6 2.5002 -3.5190 3.5353 8 8 1.9933 -4.5243 3.0755 9 7 3.1426 -3.5691 4.7191 10 6 3.2308 -4.8348 5.4517 11 1 3.1280 -5.7068 4.8059 12 6 4.4352 -4.9123 6.4046 13 6 3.5255 -4.2926 7.4785 14 1 3.5417 -3.2028 7.4885 15 6 3.7125 -4.8932 8.8479 16 6 4.1090 -4.0944 9.9054 17 17 4.3919 -2.4000 9.6554 18 6 4.2749 -4.6455 11.1638 19 6 4.0501 -5.9946 11.3622 20 6 3.6600 -6.7937 10.3034 21 6 3.4952 -6.2440 9.0460 22 6 2.3377 -4.8859 6.7026 23 6 2.9182 -1.0370 3.1767 24 8 2.6260 -0.1417 2.2283 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 1.5613 2.4679 1.2085 28 1 3.5345 1.7704 -0.0320 29 1 1.2368 -2.7396 0.8968 30 1 3.5466 -2.7672 5.0860 31 1 5.2656 -4.2698 6.1120 32 1 4.7483 -5.9312 6.6326 33 1 4.5804 -4.0215 11.9907 34 1 4.1799 -6.4249 12.3442 35 1 3.4849 -7.8480 10.4588 36 1 3.1909 -6.8687 8.2193 37 1 2.0763 -5.8980 7.0114 38 1 1.4748 -4.2220 6.6505 39 1 3.4648 -0.8379 4.0866 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:15:09 Heat of formation + Delta-G solvation = 3.331788 kcal Electronic energy + Delta-G solvation = -25042.368542 eV Core-core repulsion = 21138.235420 eV Total energy + Delta-G solvation = -3904.133121 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.080 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.88422 -41.64931 -40.35684 -38.84879 -37.90509 -37.44173 -34.93858 -33.98408 -32.26435 -31.69249 -31.47596 -26.99322 -26.78128 -26.34002 -24.98453 -23.68114 -22.61755 -22.39531 -21.15111 -20.27013 -18.98195 -18.68108 -18.35734 -17.53493 -17.30079 -17.09522 -16.67564 -16.41078 -16.08991 -15.94409 -15.80049 -15.19784 -15.12288 -14.80983 -14.77248 -14.44490 -14.30680 -14.21287 -13.82259 -13.57365 -13.42645 -12.99647 -12.74691 -12.70716 -12.50838 -12.19212 -12.18009 -11.82500 -11.58117 -11.35547 -11.29531 -11.09506 -10.50098 -10.25970 -9.90880 -9.85551 -9.60974 -5.04779 0.08909 0.15732 0.26337 0.68863 1.13824 1.17021 1.50803 1.67851 1.89344 2.00881 2.11348 2.60495 3.25279 3.35773 3.37977 3.55805 3.61608 3.68469 3.80150 3.82792 3.91668 4.07388 4.13703 4.18925 4.33299 4.36425 4.37636 4.40315 4.58765 4.68713 4.72085 4.72839 4.79115 4.85442 4.93807 4.97908 5.02408 5.06370 5.27380 5.36658 5.47013 5.53490 5.69065 5.84337 6.33891 6.81882 7.01954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.048 4.048 3 Si 0.817 3.183 4 C -0.029 4.029 5 C -0.142 4.142 6 C -0.262 4.262 7 C 0.593 3.407 8 O -0.577 6.577 9 N -0.694 5.694 10 C 0.116 3.884 11 H 0.093 0.907 12 C -0.120 4.120 13 C -0.076 4.076 14 H 0.105 0.895 15 C -0.070 4.070 16 C -0.050 4.050 17 Cl -0.075 7.075 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.140 4.140 23 C 0.054 3.946 24 O -0.185 6.185 25 H 0.413 0.587 26 H 0.121 0.879 27 H -0.302 1.302 28 H -0.289 1.289 29 H 0.156 0.844 30 H 0.414 0.586 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 2.020 -0.500 2.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.156 4.156 3 Si 0.722 3.278 4 C -0.076 4.076 5 C -0.162 4.162 6 C -0.266 4.266 7 C 0.381 3.619 8 O -0.458 6.458 9 N -0.345 5.345 10 C 0.011 3.989 11 H 0.111 0.889 12 C -0.158 4.158 13 C -0.094 4.094 14 H 0.123 0.877 15 C -0.071 4.071 16 C -0.076 4.076 17 Cl -0.046 7.046 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.178 4.178 23 C -0.016 4.016 24 O -0.082 6.082 25 H 0.267 0.733 26 H 0.138 0.862 27 H -0.230 1.230 28 H -0.216 1.216 29 H 0.173 0.827 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.447 2.032 0.087 3.182 hybrid contribution 0.074 -0.287 0.643 0.708 sum 2.521 1.745 0.730 3.152 Atomic orbital electron populations 1.86421 1.16364 1.82714 1.52048 1.24152 0.86417 1.12723 0.92314 0.94010 0.76965 0.72962 0.83907 1.21749 1.01137 0.92308 0.92452 1.22617 1.01547 0.95851 0.96175 1.21524 1.10806 0.94846 0.99469 1.17365 0.77282 0.86671 0.80537 1.90785 1.48577 1.37137 1.69273 1.45368 1.56364 1.12815 1.20000 1.21886 0.97791 0.86823 0.92385 0.88917 1.23369 0.96090 1.03394 0.92938 1.21687 0.97487 1.00624 0.89612 0.87720 1.19693 0.99262 0.93786 0.94371 1.21037 1.05615 0.85252 0.95735 1.98358 1.94742 1.14603 1.96941 1.21304 1.00570 0.96477 0.95658 1.21452 0.98659 0.92698 1.00694 1.21599 0.97823 1.01447 0.92491 1.21261 0.99593 0.93614 0.98493 1.23570 0.96755 1.02782 0.94690 1.25281 0.97826 0.85462 0.93012 1.83737 1.57810 1.39842 1.26804 0.73318 0.86170 1.23023 1.21622 0.82665 0.74926 0.89459 0.87301 0.84324 0.83307 0.83352 0.83474 0.87657 0.91643 0.72582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.31 12.86 -148.98 -1.92 -1.61 16 2 C -0.05 0.04 2.96 71.24 0.21 0.26 16 3 Si 0.82 -2.38 32.09 68.60 2.20 -0.17 16 4 C -0.03 -0.17 6.22 24.76 0.15 -0.02 16 5 C -0.14 -1.23 10.90 23.65 0.26 -0.97 16 6 C -0.26 -1.64 6.31 -18.99 -0.12 -1.76 16 7 C 0.59 4.83 7.81 86.65 0.68 5.51 16 8 O -0.58 -9.88 16.58 -4.07 -0.07 -9.95 16 9 N -0.69 -0.11 5.25 -443.33 -2.33 -2.44 16 10 C 0.12 -0.02 4.32 45.52 0.20 0.18 16 11 H 0.09 0.35 7.47 -2.39 -0.02 0.33 16 12 C -0.12 0.49 7.29 31.12 0.23 0.72 16 13 C -0.08 0.18 3.64 -11.02 -0.04 0.14 16 14 H 0.10 -0.26 6.57 -2.39 -0.02 -0.28 16 15 C -0.07 0.01 5.29 -19.84 -0.10 -0.09 16 16 C -0.05 -0.09 6.31 22.33 0.14 0.06 16 17 Cl -0.08 -0.13 27.16 -2.72 -0.07 -0.20 16 18 C -0.12 -0.05 9.83 22.29 0.22 0.17 16 19 C -0.12 0.22 10.05 22.27 0.22 0.45 16 20 C -0.12 0.32 10.05 22.27 0.22 0.54 16 21 C -0.11 0.24 8.59 22.27 0.19 0.43 16 22 C -0.14 0.15 7.25 31.12 0.23 0.38 16 23 C 0.05 0.01 11.61 67.39 0.78 0.79 16 24 O -0.19 -0.96 8.90 4.43 0.04 -0.92 16 25 H 0.41 -5.11 8.74 -74.06 -0.65 -5.75 16 26 H 0.12 -0.75 7.96 -2.39 -0.02 -0.77 16 27 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 28 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 29 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 30 H 0.41 -2.63 7.67 -92.71 -0.71 -3.34 16 31 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.11 -0.58 7.71 -2.39 -0.02 -0.60 16 33 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 34 H 0.15 -0.89 8.06 -2.91 -0.02 -0.92 16 35 H 0.15 -1.03 8.06 -2.91 -0.02 -1.05 16 36 H 0.15 -0.83 6.68 -2.91 -0.02 -0.85 16 37 H 0.11 -0.29 6.33 -2.39 -0.02 -0.31 16 38 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.26 -2.80 7.47 -2.91 -0.02 -2.82 16 Total: 0.00 -26.44 350.62 1.12 -25.32 By element: Atomic # 1 Polarization: -16.59 SS G_CDS: -0.20 Total: -16.80 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 3.47 Total: 6.77 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: -2.33 Total: -2.44 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.94 Total: -12.48 kcal Atomic # 14 Polarization: -2.38 SS G_CDS: 2.20 Total: -0.17 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.07 Total: -0.20 kcal Total: -26.44 1.12 -25.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.653 kcal (2) G-P(sol) polarization free energy of solvation -26.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds