Wall clock time and date at job start Sat Mar 6 2021 13:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37871 * 126.45790 * 2 1 4 4 C 1.46677 * 126.23109 * 359.96126 * 3 2 1 5 5 O 1.21690 * 120.00051 * 359.71852 * 4 3 2 6 6 N 1.34778 * 119.99548 * 179.71610 * 4 3 2 7 7 C 1.46501 * 119.99659 * 180.02562 * 6 4 3 8 8 H 1.09006 * 112.84836 * 336.19470 * 7 6 4 9 9 C 1.53951 * 113.53868 * 107.50694 * 7 6 4 10 10 C 1.53783 * 87.02112 * 89.18830 * 9 7 6 11 11 H 1.09000 * 113.61203 * 270.77336 * 10 9 7 12 12 C 1.50700 * 113.61470 * 139.95356 * 10 9 7 13 13 C 1.38321 * 120.00717 * 140.86250 * 12 10 9 14 14 Cl 1.73598 * 120.01426 * 0.02562 * 13 12 10 15 15 C 1.38378 * 119.97799 * 180.02562 * 13 12 10 16 16 C 1.38194 * 119.98273 * 0.02562 * 15 13 12 17 17 C 1.38272 * 120.01273 * 359.97438 * 16 15 13 18 18 C 1.38219 * 120.02538 * 0.28256 * 17 16 15 19 19 C 1.53776 * 113.61417 * 205.00180 * 7 6 4 20 20 N 1.37652 * 107.53084 * 179.70317 * 3 2 1 21 21 C 1.35534 * 108.64758 * 0.26239 * 20 3 2 22 22 C 1.50700 * 125.56436 * 179.97438 * 21 20 3 23 23 O 1.42903 * 109.47313 * 64.99397 * 22 21 20 24 24 Si 1.86300 * 109.46925 * 184.99892 * 22 21 20 25 25 C 1.35455 * 108.86925 * 359.97438 * 21 20 3 26 26 H 1.08997 * 109.47261 * 90.00517 * 1 2 3 27 27 H 1.09006 * 109.47037 * 210.00291 * 1 2 3 28 28 H 1.08996 * 109.47216 * 329.99936 * 1 2 3 29 29 H 0.96995 * 120.00780 * 0.02562 * 6 4 3 30 30 H 1.09002 * 113.66461 * 334.65885 * 9 7 6 31 31 H 1.08999 * 113.61250 * 203.71174 * 9 7 6 32 32 H 1.07993 * 120.01134 * 180.02562 * 15 13 12 33 33 H 1.08001 * 119.99672 * 179.97438 * 16 15 13 34 34 H 1.08002 * 119.98328 * 179.97438 * 17 16 15 35 35 H 1.08002 * 119.99110 * 179.72232 * 18 17 16 36 36 H 1.09007 * 113.61635 * 156.33418 * 19 7 6 37 37 H 1.09003 * 113.61672 * 25.43042 * 19 7 6 38 38 H 0.96998 * 125.67126 * 180.28214 * 20 3 2 39 39 H 1.09000 * 109.46925 * 304.99613 * 22 21 20 40 40 H 0.96701 * 113.99399 * 179.97438 * 23 22 21 41 41 H 1.48498 * 109.99709 * 178.67962 * 24 22 21 42 42 H 1.48502 * 109.99749 * 299.99417 * 24 22 21 43 43 H 1.07999 * 126.06490 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5092 -0.0008 5 8 0.7026 2.7765 -0.0067 6 7 2.8037 3.4998 0.0051 7 6 2.3678 4.8985 0.0049 8 1 1.3664 5.0297 -0.4054 9 6 2.5835 5.6099 1.3529 10 6 3.9811 5.9911 0.8368 11 1 4.7475 5.2501 1.0640 12 6 4.3970 7.3933 1.1999 13 6 5.7043 7.6533 1.5697 14 17 6.8665 6.3646 1.6152 15 6 6.0854 8.9410 1.9035 16 6 5.1596 9.9664 1.8677 17 6 3.8530 9.7059 1.4979 18 6 3.4706 8.4189 1.1696 19 6 3.4066 5.8673 -0.5842 20 7 3.6283 0.6624 0.0068 21 6 3.6217 -0.6929 0.0051 22 6 4.8433 -1.5754 0.0103 23 8 5.5566 -1.3942 1.2353 24 14 4.3229 -3.3572 -0.1477 25 6 2.3379 -1.1247 -0.0022 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 3.7499 3.2868 0.0095 30 1 2.6031 4.9327 2.2069 31 1 1.9259 6.4657 1.5051 32 1 7.1060 9.1446 2.1919 33 1 5.4568 10.9714 2.1286 34 1 3.1298 10.5076 1.4705 35 1 2.4488 8.2153 0.8852 36 1 2.9744 6.7938 -0.9626 37 1 4.0897 5.3977 -1.2920 38 1 4.4190 1.2243 0.0122 39 1 5.4873 -1.3093 -0.8279 40 1 6.3564 -1.9330 1.3080 41 1 5.5200 -4.2354 -0.1758 42 1 3.4444 -3.7324 0.9893 43 1 2.0136 -2.1549 -0.0055 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_13940406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:15:11 Heat of formation + Delta-G solvation = 24.522711 kcal Electronic energy + Delta-G solvation = -27254.469486 eV Core-core repulsion = 23293.436315 eV Total energy + Delta-G solvation = -3961.033171 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.108 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.63555 -41.50617 -40.18344 -38.81200 -37.84150 -37.45832 -34.92566 -33.50354 -32.18015 -31.69913 -31.36825 -28.24385 -27.28298 -26.78336 -25.94232 -23.84837 -23.03338 -22.42665 -21.55849 -20.57083 -20.07743 -19.51163 -18.65444 -18.29908 -17.21646 -16.90198 -16.66000 -16.48456 -16.32739 -15.98209 -15.44721 -15.23889 -15.01296 -14.86175 -14.80914 -14.70519 -14.56818 -14.16014 -13.97749 -13.61814 -13.55737 -13.42036 -13.32675 -13.11638 -12.98028 -12.73608 -12.52049 -12.49040 -12.19461 -11.99989 -11.82773 -11.57296 -11.31478 -11.15868 -10.63890 -10.27537 -9.86848 -9.84951 -9.62039 -9.21626 -4.85313 0.14706 0.25401 0.26796 1.12480 1.19757 1.48904 1.64063 1.89935 1.98405 2.16207 2.21468 2.59920 3.24207 3.35066 3.54963 3.59988 3.74833 3.77581 3.82961 3.90925 4.06240 4.10985 4.12848 4.13392 4.35843 4.36927 4.39538 4.57647 4.68449 4.69083 4.71409 4.75958 4.79129 4.85153 4.91484 4.92978 4.97064 5.05361 5.15408 5.26731 5.31801 5.37630 5.46442 5.52492 5.62762 5.82817 5.83857 6.26152 6.42177 6.51726 7.02570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.084 4.084 3 C -0.071 4.071 4 C 0.592 3.408 5 O -0.557 6.557 6 N -0.703 5.703 7 C 0.119 3.881 8 H 0.098 0.902 9 C -0.139 4.139 10 C -0.077 4.077 11 H 0.100 0.900 12 C -0.070 4.070 13 C -0.051 4.051 14 Cl -0.077 7.077 15 C -0.122 4.122 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.120 4.120 20 N -0.516 5.516 21 C 0.074 3.926 22 C -0.067 4.067 23 O -0.561 6.561 24 Si 0.789 3.211 25 C -0.210 4.210 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.406 0.594 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.426 0.574 39 H 0.106 0.894 40 H 0.401 0.599 41 H -0.279 1.279 42 H -0.299 1.299 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 1.037 -3.456 5.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.184 4.184 4 C 0.381 3.619 5 O -0.435 6.435 6 N -0.354 5.354 7 C 0.014 3.986 8 H 0.116 0.884 9 C -0.178 4.178 10 C -0.095 4.095 11 H 0.118 0.882 12 C -0.071 4.071 13 C -0.077 4.077 14 Cl -0.048 7.048 15 C -0.140 4.140 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.129 4.129 19 C -0.158 4.158 20 N -0.113 5.113 21 C -0.045 4.045 22 C -0.175 4.175 23 O -0.372 6.372 24 Si 0.692 3.308 25 C -0.234 4.234 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.241 0.759 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.266 0.734 39 H 0.123 0.877 40 H 0.252 0.748 41 H -0.205 1.205 42 H -0.226 1.226 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.461 0.907 -2.993 3.980 hybrid contribution 2.134 0.297 1.032 2.389 sum 4.595 1.204 -1.962 5.139 Atomic orbital electron populations 1.20341 0.88858 1.02754 1.02686 1.20169 0.96472 0.91070 1.01536 1.20133 0.84341 0.93197 1.20716 1.17122 0.85605 0.83499 0.75624 1.90812 1.17330 1.83642 1.51719 1.45464 1.09443 1.05432 1.75065 1.21911 0.99713 0.79514 0.97460 0.88361 1.23594 0.96059 1.00898 0.97199 1.21676 0.97405 0.92936 0.97519 0.88214 1.19691 0.91469 0.96544 0.99420 1.21044 0.90821 0.89960 1.05918 1.98357 1.58814 1.50523 1.97147 1.21298 1.01436 0.91011 1.00274 1.21457 0.93219 0.99776 0.99030 1.21611 0.96758 0.97432 0.97482 1.21263 1.00031 0.91995 0.99575 1.23374 0.97200 0.99874 0.95385 1.41799 1.06917 1.06684 1.55877 1.20153 0.95645 0.82798 1.05915 1.24764 0.92873 1.10171 0.89725 1.86538 1.43497 1.68991 1.38192 0.93419 0.79959 0.70076 0.87376 1.20787 0.90870 0.99584 1.12126 0.90738 0.90497 0.92020 0.75875 0.91903 0.87508 0.84361 0.83266 0.83244 0.83341 0.87113 0.89768 0.73429 0.87663 0.74789 1.20535 1.22601 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 9.83 71.24 0.70 0.16 16 2 C -0.08 -0.58 6.21 -19.56 -0.12 -0.70 16 3 C -0.07 -0.41 7.06 40.35 0.28 -0.13 16 4 C 0.59 4.23 7.79 86.45 0.67 4.90 16 5 O -0.56 -7.75 14.40 -4.32 -0.06 -7.81 16 6 N -0.70 -0.28 5.26 -443.72 -2.33 -2.61 16 7 C 0.12 -0.06 4.33 45.57 0.20 0.14 16 8 H 0.10 0.25 7.46 -2.38 -0.02 0.23 16 9 C -0.14 0.14 7.27 31.18 0.23 0.37 16 10 C -0.08 0.15 3.65 -11.01 -0.04 0.11 16 11 H 0.10 -0.13 6.55 -2.39 -0.02 -0.15 16 12 C -0.07 0.00 5.29 -19.84 -0.11 -0.11 16 13 C -0.05 -0.10 6.31 22.32 0.14 0.04 16 14 Cl -0.08 -0.18 27.15 -2.72 -0.07 -0.25 16 15 C -0.12 -0.07 9.83 22.29 0.22 0.15 16 16 C -0.12 0.23 10.05 22.27 0.22 0.45 16 17 C -0.11 0.33 10.05 22.27 0.22 0.56 16 18 C -0.11 0.25 8.55 22.27 0.19 0.44 16 19 C -0.12 0.49 7.29 31.12 0.23 0.71 16 20 N -0.52 -0.36 5.99 -171.93 -1.03 -1.39 16 21 C 0.07 0.10 6.50 41.34 0.27 0.37 16 22 C -0.07 0.24 3.07 71.24 0.22 0.46 16 23 O -0.56 0.59 12.86 -148.98 -1.92 -1.32 16 24 Si 0.79 -3.21 30.56 68.60 2.10 -1.11 16 25 C -0.21 -0.72 9.27 22.01 0.20 -0.51 16 26 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.08 0.22 8.14 -2.38 -0.02 0.20 16 28 H 0.06 0.62 6.49 -2.39 -0.02 0.61 16 29 H 0.41 -1.79 7.83 -92.71 -0.73 -2.52 16 30 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.11 -0.32 6.38 -2.39 -0.02 -0.34 16 32 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 33 H 0.15 -0.91 8.06 -2.91 -0.02 -0.94 16 34 H 0.15 -1.08 8.06 -2.91 -0.02 -1.11 16 35 H 0.15 -0.89 6.72 -2.91 -0.02 -0.91 16 36 H 0.11 -0.62 7.67 -2.38 -0.02 -0.64 16 37 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.43 -2.00 8.19 -92.71 -0.76 -2.76 16 39 H 0.11 -0.93 7.96 -2.39 -0.02 -0.95 16 40 H 0.40 -3.67 8.74 -74.06 -0.65 -4.31 16 41 H -0.28 0.22 7.11 99.48 0.71 0.93 16 42 H -0.30 -1.26 7.11 99.48 0.71 -0.55 16 43 H 0.16 -0.05 6.19 -2.91 -0.02 -0.07 16 Total: 0.00 -19.97 369.68 -0.59 -20.56 By element: Atomic # 1 Polarization: -12.48 SS G_CDS: -1.01 Total: -13.49 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 3.73 Total: 7.42 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: -3.36 Total: -4.00 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -1.98 Total: -9.13 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.10 Total: -1.11 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.07 Total: -0.25 kcal Total: -19.97 -0.59 -20.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_13940406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.085 kcal (2) G-P(sol) polarization free energy of solvation -19.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds