Wall clock time and date at job start Sat Mar 6 2021 13:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86305 * 109.47537 * 2 1 4 4 C 1.50705 * 109.47158 * 240.00070 * 2 1 3 5 5 C 1.34500 * 125.49551 * 150.33799 * 4 2 1 6 6 C 1.46751 * 106.36207 * 180.14026 * 5 4 2 7 7 C 1.47262 * 126.96582 * 179.82394 * 6 5 4 8 8 O 1.21626 * 119.99968 * 179.68491 * 7 6 5 9 9 N 1.34772 * 120.00286 * 359.67723 * 7 6 5 10 10 C 1.46500 * 120.00149 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.85068 * 23.81182 * 10 9 7 12 12 C 1.53777 * 113.61088 * 155.00452 * 10 9 7 13 13 C 1.53781 * 87.08336 * 89.11940 * 12 10 9 14 14 H 1.09002 * 113.61228 * 270.88201 * 13 12 10 15 15 C 1.50701 * 113.61772 * 140.06093 * 13 12 10 16 16 C 1.38331 * 120.00737 * 121.52878 * 15 13 12 17 17 Cl 1.73607 * 120.01161 * 0.02562 * 16 15 13 18 18 C 1.38367 * 119.97549 * 179.97438 * 16 15 13 19 19 C 1.38196 * 119.98602 * 359.97438 * 18 16 15 20 20 C 1.38259 * 120.01184 * 359.97438 * 19 18 16 21 21 C 1.38215 * 120.02597 * 359.78445 * 20 19 18 22 22 C 1.53775 * 113.61823 * 252.50051 * 10 9 7 23 23 C 1.36335 * 106.06214 * 359.55838 * 6 5 4 24 24 C 1.50994 * 126.79160 * 180.30781 * 23 6 5 25 25 C 1.53395 * 108.25936 * 164.30439 * 24 23 6 26 26 C 1.53165 * 109.04164 * 48.45506 * 25 24 23 27 27 C 1.53133 * 109.52472 * 290.43246 * 26 25 24 28 28 N 1.35214 * 108.66476 * 0.28463 * 23 6 5 29 29 H 0.96708 * 114.00052 * 59.99863 * 1 2 3 30 30 H 1.08997 * 109.47371 * 120.00217 * 2 1 3 31 31 H 1.48507 * 109.99669 * 298.68484 * 3 2 1 32 32 H 1.48496 * 109.99777 * 59.99668 * 3 2 1 33 33 H 1.07993 * 126.81748 * 359.96794 * 5 4 2 34 34 H 0.96999 * 120.00148 * 0.02562 * 9 7 6 35 35 H 1.08997 * 113.61941 * 334.56647 * 12 10 9 36 36 H 1.09005 * 113.61136 * 203.66812 * 12 10 9 37 37 H 1.08003 * 120.00948 * 179.97438 * 18 16 15 38 38 H 1.07995 * 119.99107 * 179.97438 * 19 18 16 39 39 H 1.08004 * 119.98589 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.99266 * 180.25608 * 21 20 19 41 41 H 1.08993 * 113.61636 * 156.33149 * 22 10 9 42 42 H 1.09008 * 113.61006 * 25.43391 * 22 10 9 43 43 H 1.09004 * 109.70648 * 283.99361 * 24 23 6 44 44 H 1.09004 * 109.71298 * 44.57226 * 24 23 6 45 45 H 1.08993 * 109.54368 * 168.32126 * 25 24 23 46 46 H 1.08996 * 109.54232 * 288.58816 * 25 24 23 47 47 H 1.09002 * 109.46226 * 50.44804 * 26 25 24 48 48 H 1.09005 * 109.46165 * 170.42618 * 26 25 24 49 49 H 1.08999 * 109.56470 * 170.83950 * 27 26 25 50 50 H 1.09006 * 109.56275 * 291.06531 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 3.0888 -0.4506 -1.8644 6 6 3.1552 -1.3777 -3.0001 7 6 4.2333 -1.4796 -3.9981 8 8 4.1606 -2.3035 -4.8898 9 7 5.3004 -0.6599 -3.9235 10 6 6.3726 -0.7609 -4.9166 11 1 6.0392 -1.2018 -5.8561 12 6 7.1705 0.5413 -5.0962 13 6 8.0921 0.0393 -3.9722 14 1 7.7644 0.3332 -2.9750 15 6 9.5518 0.3235 -4.2160 16 6 10.2716 1.0763 -3.3055 17 17 9.4937 1.6932 -1.8813 18 6 11.6119 1.3364 -3.5298 19 6 12.2310 0.8437 -4.6628 20 6 11.5114 0.0905 -5.5719 21 6 10.1737 -0.1738 -5.3459 22 6 7.6658 -1.3848 -4.3659 23 6 2.0195 -2.1295 -2.9403 24 6 1.6162 -3.2354 -3.8860 25 6 0.4948 -4.0474 -3.2256 26 6 -0.5702 -3.0854 -2.6904 27 6 -0.0058 -2.3097 -1.4968 28 7 1.2883 -1.7251 -1.8772 29 1 -0.3934 0.4418 -0.7651 30 1 1.7923 -0.5138 0.8899 31 1 1.5879 2.4586 -1.2243 32 1 1.5615 2.4679 1.2084 33 1 3.8221 0.2943 -1.5933 34 1 5.3586 -0.0030 -3.2121 35 1 6.6088 1.4375 -4.8329 36 1 7.6655 0.6201 -6.0642 37 1 12.1743 1.9244 -2.8195 38 1 13.2770 1.0470 -4.8382 39 1 11.9957 -0.2947 -6.4571 40 1 9.6131 -0.7657 -6.0544 41 1 8.2961 -1.8326 -5.1341 42 1 7.5037 -2.0436 -3.5127 43 1 1.2573 -2.8064 -4.8216 44 1 2.4719 -3.8815 -4.0824 45 1 0.0464 -4.7151 -3.9611 46 1 0.9045 -4.6323 -2.4021 47 1 -0.8553 -2.3858 -3.4762 48 1 -1.4456 -3.6524 -2.3738 49 1 -0.6976 -1.5149 -1.2180 50 1 0.1314 -2.9867 -0.6535 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:15:24 Heat of formation + Delta-G solvation = 24.576808 kcal Electronic energy + Delta-G solvation = -33273.882487 eV Core-core repulsion = 28873.550284 eV Total energy + Delta-G solvation = -4400.332204 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.139 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.80230 -41.44357 -40.10019 -38.68875 -38.08179 -37.34809 -36.90934 -34.46047 -33.47733 -31.76229 -31.62229 -31.15902 -29.45993 -26.77272 -26.65550 -26.07926 -24.68176 -24.21003 -23.50674 -22.47892 -21.76904 -21.21424 -20.15475 -19.49169 -18.96120 -18.22996 -17.49125 -17.03351 -16.75428 -16.62983 -16.44994 -16.26688 -16.15591 -15.77222 -15.37122 -15.34146 -15.14829 -15.02775 -14.85521 -14.72966 -14.68299 -14.55005 -14.40910 -14.18648 -13.85792 -13.44241 -13.29465 -13.20871 -12.91263 -12.81036 -12.62973 -12.41770 -12.39205 -12.19039 -12.09601 -12.01120 -11.83377 -11.77049 -11.67775 -11.45097 -11.18742 -10.90153 -10.85568 -10.05313 -9.79075 -9.56420 -9.52305 -9.05268 -4.91870 0.22771 0.33160 0.71776 1.04477 1.22562 1.42856 1.66249 1.77206 2.01762 2.39329 2.54024 2.67647 3.17261 3.46027 3.49150 3.56092 3.66308 3.67846 3.75372 3.78185 3.80937 3.92338 4.01747 4.15286 4.16133 4.23012 4.30294 4.35552 4.39131 4.44266 4.44676 4.50697 4.62433 4.69650 4.74912 4.76838 4.77523 4.80725 4.81341 4.89799 4.96235 4.97234 5.01127 5.04272 5.07107 5.14627 5.18946 5.24255 5.34375 5.49933 5.53939 5.70075 5.73879 5.90944 6.01907 6.20972 6.32879 6.69008 7.37666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.053 4.053 3 Si 0.795 3.205 4 C -0.018 4.018 5 C -0.161 4.161 6 C -0.256 4.256 7 C 0.592 3.408 8 O -0.587 6.587 9 N -0.698 5.698 10 C 0.120 3.880 11 H 0.089 0.911 12 C -0.123 4.123 13 C -0.075 4.075 14 H 0.106 0.894 15 C -0.069 4.069 16 C -0.049 4.049 17 Cl -0.072 7.072 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.138 4.138 23 C 0.103 3.897 24 C -0.053 4.053 25 C -0.124 4.124 26 C -0.134 4.134 27 C 0.095 3.905 28 N -0.428 5.428 29 H 0.386 0.614 30 H 0.130 0.870 31 H -0.289 1.289 32 H -0.295 1.295 33 H 0.181 0.819 34 H 0.412 0.588 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.107 0.893 49 H 0.112 0.888 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 1.332 0.621 1.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.162 4.162 3 Si 0.698 3.302 4 C -0.127 4.127 5 C -0.184 4.184 6 C -0.266 4.266 7 C 0.383 3.617 8 O -0.469 6.469 9 N -0.349 5.349 10 C 0.014 3.986 11 H 0.107 0.893 12 C -0.161 4.161 13 C -0.093 4.093 14 H 0.124 0.876 15 C -0.070 4.070 16 C -0.076 4.076 17 Cl -0.043 7.043 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.177 4.177 23 C -0.016 4.016 24 C -0.091 4.091 25 C -0.162 4.162 26 C -0.171 4.171 27 C -0.025 4.025 28 N -0.104 5.104 29 H 0.235 0.765 30 H 0.147 0.853 31 H -0.216 1.216 32 H -0.222 1.222 33 H 0.198 0.802 34 H 0.249 0.751 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.125 0.875 49 H 0.130 0.870 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.426 1.219 0.824 1.532 hybrid contribution -0.966 0.086 0.033 0.970 sum -0.540 1.305 0.857 1.652 Atomic orbital electron populations 1.86566 1.18321 1.79825 1.50424 1.25005 0.83302 1.11626 0.96242 0.93505 0.90097 0.70111 0.76453 1.20947 0.96270 0.95590 0.99847 1.21988 0.98309 1.02660 0.95480 1.19961 0.98056 1.06244 1.02309 1.17529 0.81226 0.79733 0.83215 1.90735 1.80240 1.38423 1.37503 1.45326 1.19743 1.38330 1.31493 1.21785 0.86322 0.98083 0.92393 0.89316 1.23369 0.96283 0.96961 0.99450 1.21678 0.89787 0.97187 1.00631 0.87563 1.19715 0.96015 0.97053 0.94183 1.21037 0.94026 1.01832 0.90695 1.98359 1.81161 1.86191 1.38606 1.21296 0.92809 1.00806 0.99096 1.21432 1.01294 0.97437 0.93470 1.21580 0.94320 0.97572 1.00016 1.21246 0.95271 0.99737 0.96761 1.23540 0.96665 0.95740 1.01758 1.20576 0.91782 0.98061 0.91134 1.20431 0.99469 0.93455 0.95733 1.21700 0.95418 0.97920 1.01173 1.21929 0.99386 0.98764 0.97030 1.22433 0.82097 0.99324 0.98613 1.44031 1.17888 1.27075 1.21419 0.76478 0.85262 1.21584 1.22244 0.80170 0.75090 0.89679 0.87666 0.84308 0.83414 0.83497 0.83619 0.88055 0.91685 0.90148 0.90055 0.89235 0.91569 0.91015 0.87489 0.86963 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.90 10.28 -148.98 -1.53 -0.63 16 2 C -0.05 0.15 3.00 71.24 0.21 0.37 16 3 Si 0.80 -3.18 31.12 68.60 2.13 -1.05 16 4 C -0.02 -0.01 6.14 40.99 0.25 0.24 16 5 C -0.16 -0.03 9.09 23.64 0.21 0.19 16 6 C -0.26 -1.55 6.28 -19.12 -0.12 -1.67 16 7 C 0.59 4.93 7.81 86.62 0.68 5.61 16 8 O -0.59 -8.96 14.93 -4.11 -0.06 -9.03 16 9 N -0.70 -1.17 5.26 -443.48 -2.33 -3.50 16 10 C 0.12 0.09 4.32 45.51 0.20 0.29 16 11 H 0.09 0.41 7.46 -2.39 -0.02 0.39 16 12 C -0.12 0.37 7.29 31.12 0.23 0.60 16 13 C -0.07 0.13 3.65 -11.01 -0.04 0.09 16 14 H 0.11 -0.19 6.55 -2.39 -0.02 -0.21 16 15 C -0.07 -0.01 5.29 -19.84 -0.11 -0.12 16 16 C -0.05 -0.09 6.31 22.32 0.14 0.05 16 17 Cl -0.07 -0.11 27.15 -2.72 -0.07 -0.18 16 18 C -0.12 -0.06 9.83 22.29 0.22 0.16 16 19 C -0.12 0.20 10.05 22.26 0.22 0.42 16 20 C -0.12 0.28 10.05 22.27 0.22 0.50 16 21 C -0.11 0.19 8.55 22.26 0.19 0.38 16 22 C -0.14 0.06 7.26 31.12 0.23 0.29 16 23 C 0.10 0.60 6.57 41.69 0.27 0.87 16 24 C -0.05 -0.24 5.32 30.07 0.16 -0.08 16 25 C -0.12 0.13 5.98 30.78 0.18 0.31 16 26 C -0.13 0.50 5.92 30.69 0.18 0.68 16 27 C 0.10 -0.21 6.21 86.33 0.54 0.33 16 28 N -0.43 -0.89 3.11 -493.61 -1.54 -2.42 16 29 H 0.39 -2.34 8.27 -74.05 -0.61 -2.96 16 30 H 0.13 -0.57 7.96 -2.39 -0.02 -0.59 16 31 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 32 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 33 H 0.18 -1.29 6.54 -2.91 -0.02 -1.31 16 34 H 0.41 -1.41 7.83 -92.71 -0.73 -2.13 16 35 H 0.08 -0.34 8.14 -2.39 -0.02 -0.35 16 36 H 0.10 -0.45 7.67 -2.38 -0.02 -0.47 16 37 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 38 H 0.15 -0.85 8.06 -2.91 -0.02 -0.88 16 39 H 0.15 -0.96 8.06 -2.91 -0.02 -0.98 16 40 H 0.15 -0.73 6.72 -2.91 -0.02 -0.75 16 41 H 0.10 -0.21 6.38 -2.39 -0.02 -0.22 16 42 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 44 H 0.08 0.66 7.40 -2.39 -0.02 0.64 16 45 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.07 -0.02 8.12 -2.39 -0.02 -0.04 16 47 H 0.07 -0.20 8.11 -2.39 -0.02 -0.22 16 48 H 0.11 -0.77 8.14 -2.38 -0.02 -0.79 16 49 H 0.11 -0.47 5.68 -2.39 -0.01 -0.49 16 50 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 Total: 0.00 -19.20 408.71 0.37 -18.83 By element: Atomic # 1 Polarization: -11.23 SS G_CDS: -0.31 Total: -11.54 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 4.07 Total: 9.51 kcal Atomic # 7 Polarization: -2.06 SS G_CDS: -3.87 Total: -5.92 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.59 Total: -9.66 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.13 Total: -1.05 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.07 Total: -0.18 kcal Total: -19.20 0.37 -18.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.406 kcal (2) G-P(sol) polarization free energy of solvation -19.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds