Wall clock time and date at job start Sat Mar 6 2021 13:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.46950 * 2 1 4 4 C 1.50701 * 109.46597 * 119.99750 * 2 1 3 5 5 C 1.32770 * 124.71572 * 65.00526 * 4 2 1 6 6 C 1.44419 * 113.08480 * 180.02562 * 5 4 2 7 7 C 1.47191 * 123.46025 * 179.97438 * 6 5 4 8 8 O 1.21636 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00025 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99758 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.85032 * 336.19438 * 10 9 7 12 12 C 1.53782 * 113.68971 * 107.45966 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.19569 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.50700 * 113.66521 * 139.88647 * 13 12 10 16 16 C 1.38330 * 120.00457 * 142.27814 * 15 13 12 17 17 Cl 1.73603 * 120.01271 * 359.97438 * 16 15 13 18 18 C 1.38373 * 119.97422 * 179.70056 * 16 15 13 19 19 C 1.38197 * 119.98403 * 0.55704 * 18 16 15 20 20 C 1.38263 * 120.01408 * 359.74097 * 19 18 16 21 21 C 1.38217 * 120.02490 * 359.97438 * 20 19 18 22 22 C 1.53781 * 113.61266 * 204.99541 * 10 9 7 23 23 C 1.36010 * 113.08219 * 0.24394 * 6 5 4 24 24 S 1.70457 * 110.81227 * 359.62569 * 23 6 5 25 25 H 0.96703 * 113.99735 * 60.00587 * 1 2 3 26 26 H 1.09000 * 109.47527 * 239.99658 * 2 1 3 27 27 H 1.48495 * 109.99971 * 298.67401 * 3 2 1 28 28 H 1.48501 * 110.00244 * 59.99789 * 3 2 1 29 29 H 1.07996 * 123.45183 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99554 * 359.97438 * 9 7 6 31 31 H 1.08997 * 113.61668 * 203.67120 * 12 10 9 32 32 H 1.08998 * 113.61674 * 334.49629 * 12 10 9 33 33 H 1.07998 * 120.00972 * 180.27648 * 18 16 15 34 34 H 1.08000 * 119.99234 * 179.77267 * 19 18 16 35 35 H 1.07994 * 119.98510 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.99259 * 180.02562 * 21 20 19 37 37 H 1.09002 * 113.61445 * 25.35018 * 22 10 9 38 38 H 1.09002 * 113.61408 * 156.16749 * 22 10 9 39 39 H 1.07997 * 124.59551 * 179.72872 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.7484 -2.0003 1.4865 6 6 2.3353 -2.4179 2.7382 7 6 2.2682 -3.7980 3.2456 8 8 1.6952 -4.6557 2.6011 9 7 2.8407 -4.1110 4.4249 10 6 2.7734 -5.4845 4.9301 11 1 1.9322 -6.0448 4.5220 12 6 4.1116 -6.2380 4.8516 13 6 4.4175 -5.6826 6.2546 14 1 4.9193 -4.7152 6.2414 15 6 5.0868 -6.6783 7.1667 16 6 6.0716 -6.2601 8.0435 17 17 6.5372 -4.5884 8.0931 18 6 6.6814 -7.1737 8.8850 19 6 6.3144 -8.5053 8.8409 20 6 5.3343 -8.9238 7.9599 21 6 4.7207 -8.0106 7.1233 22 6 2.8965 -5.5849 6.4597 23 6 2.9514 -1.4038 3.4029 24 16 2.8385 0.0528 2.5247 25 1 -0.3933 0.4416 -0.7651 26 1 1.7924 -0.5139 -0.8899 27 1 1.5880 2.4585 -1.2243 28 1 1.5614 2.4680 1.2085 29 1 1.2156 -2.6685 0.8263 30 1 3.2974 -3.4269 4.9391 31 1 4.0015 -7.3222 4.8272 32 1 4.7792 -5.8628 4.0760 33 1 7.4471 -6.8471 9.5730 34 1 6.7928 -9.2192 9.4951 35 1 5.0476 -9.9644 7.9261 36 1 3.9550 -8.3379 6.4357 37 1 2.5837 -4.6815 6.9832 38 1 2.4528 -6.4898 6.8750 39 1 3.4467 -1.5076 4.3570 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:17:00 Heat of formation + Delta-G solvation = 18.418697 kcal Electronic energy + Delta-G solvation = -24647.384690 eV Core-core repulsion = 20867.976465 eV Total energy + Delta-G solvation = -3779.408225 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.053 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70869 -40.59507 -39.15213 -38.52818 -37.40941 -37.25157 -34.75338 -32.27615 -31.66724 -31.36842 -26.99335 -26.75399 -26.73035 -25.30992 -23.69644 -22.64424 -22.06017 -20.52491 -20.24635 -18.76433 -18.55241 -18.35290 -17.99663 -17.02829 -16.57388 -16.44258 -16.18468 -16.11761 -15.80987 -15.21024 -15.14663 -14.80067 -14.75233 -14.40079 -14.19546 -13.93362 -13.87169 -13.77619 -13.47174 -13.35040 -12.97125 -12.74690 -12.69420 -12.47581 -12.42383 -12.15874 -12.04324 -11.77743 -11.52447 -11.27258 -11.06979 -10.60976 -10.23337 -9.97866 -9.83500 -9.58356 -9.47436 -5.05277 -0.36421 0.18234 0.28866 0.35089 0.68236 0.80171 1.16868 1.20182 1.56764 1.87508 2.01892 2.22102 2.63062 3.28989 3.39307 3.58800 3.62071 3.66850 3.84329 3.87757 3.94582 3.98948 4.10354 4.16645 4.25336 4.39042 4.40073 4.40898 4.61684 4.69796 4.71574 4.74847 4.81053 4.88862 4.97114 4.97951 5.00962 5.11096 5.15143 5.29985 5.41125 5.49591 5.57954 5.86794 6.41624 6.52273 7.10604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.050 4.050 3 Si 0.723 3.277 4 C -0.210 4.210 5 C -0.076 4.076 6 C -0.181 4.181 7 C 0.580 3.420 8 O -0.580 6.580 9 N -0.695 5.695 10 C 0.116 3.884 11 H 0.091 0.909 12 C -0.138 4.138 13 C -0.075 4.075 14 H 0.105 0.895 15 C -0.070 4.070 16 C -0.050 4.050 17 Cl -0.074 7.074 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.191 4.191 24 S 0.246 5.754 25 H 0.398 0.602 26 H 0.102 0.898 27 H -0.257 1.257 28 H -0.268 1.268 29 H 0.135 0.865 30 H 0.413 0.587 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 1.537 1.859 4.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.160 4.160 3 Si 0.623 3.377 4 C -0.326 4.326 5 C -0.106 4.106 6 C -0.199 4.199 7 C 0.367 3.633 8 O -0.461 6.461 9 N -0.346 5.346 10 C 0.011 3.989 11 H 0.109 0.891 12 C -0.176 4.176 13 C -0.093 4.093 14 H 0.123 0.877 15 C -0.071 4.071 16 C -0.076 4.076 17 Cl -0.045 7.045 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.160 4.160 23 C -0.330 4.330 24 S 0.513 5.487 25 H 0.249 0.751 26 H 0.120 0.880 27 H -0.181 1.181 28 H -0.194 1.194 29 H 0.153 0.847 30 H 0.250 0.750 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.312 3.088 2.214 5.747 hybrid contribution -1.410 -1.355 -0.538 2.028 sum 2.902 1.733 1.676 3.772 Atomic orbital electron populations 1.86571 1.18229 1.80727 1.51206 1.24387 0.84128 1.11370 0.96164 0.94470 0.90526 0.72471 0.80205 1.23812 1.08953 0.97280 1.02590 1.20997 0.98692 0.95096 0.95798 1.20074 1.07948 0.93962 0.97905 1.17846 0.77423 0.87157 0.80849 1.90785 1.45412 1.51074 1.58798 1.45394 1.56656 1.11495 1.21031 1.21862 0.98948 0.82666 0.95471 0.89131 1.23584 0.96607 1.01448 0.96001 1.21703 0.95703 0.98076 0.93830 0.87660 1.19686 0.95591 0.95325 0.96449 1.21033 0.99938 0.85716 1.00915 1.98358 1.91469 1.16970 1.97740 1.21301 1.00499 0.93283 0.98902 1.21446 0.97640 0.95163 0.99275 1.21591 0.95741 1.01070 0.94997 1.21256 1.00532 0.91529 0.99674 1.23372 0.94160 1.04495 0.93965 1.26162 1.03343 0.97815 1.05661 1.82978 1.48608 1.07998 1.09129 0.75062 0.88047 1.18115 1.19395 0.84689 0.74953 0.87776 0.91390 0.84295 0.83336 0.83414 0.83543 0.89669 0.87466 0.77907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.69 12.86 -148.98 -1.92 -3.61 16 2 C -0.05 0.00 2.93 71.24 0.21 0.21 16 3 Si 0.72 -2.17 30.92 68.60 2.12 -0.04 16 4 C -0.21 -0.60 5.69 24.51 0.14 -0.46 16 5 C -0.08 -0.53 9.95 22.67 0.23 -0.31 16 6 C -0.18 -0.84 5.98 -19.87 -0.12 -0.96 16 7 C 0.58 4.47 7.79 86.59 0.67 5.15 16 8 O -0.58 -9.62 16.39 -4.14 -0.07 -9.69 16 9 N -0.69 -0.28 5.24 -443.51 -2.32 -2.60 16 10 C 0.12 0.01 4.32 45.52 0.20 0.21 16 11 H 0.09 0.38 7.46 -2.39 -0.02 0.36 16 12 C -0.14 0.18 7.27 31.18 0.23 0.41 16 13 C -0.07 0.18 3.66 -10.95 -0.04 0.14 16 14 H 0.11 -0.27 6.57 -2.39 -0.02 -0.29 16 15 C -0.07 0.02 5.29 -19.84 -0.11 -0.08 16 16 C -0.05 -0.07 6.31 22.32 0.14 0.07 16 17 Cl -0.07 -0.09 27.16 -2.72 -0.07 -0.17 16 18 C -0.12 -0.02 9.83 22.29 0.22 0.20 16 19 C -0.12 0.24 10.05 22.27 0.22 0.47 16 20 C -0.12 0.33 10.05 22.27 0.22 0.55 16 21 C -0.11 0.24 8.61 22.26 0.19 0.44 16 22 C -0.12 0.45 7.29 31.12 0.23 0.67 16 23 C -0.19 0.44 10.38 67.30 0.70 1.13 16 24 S 0.25 -0.55 20.20 -56.49 -1.14 -1.69 16 25 H 0.40 -2.24 8.74 -74.06 -0.65 -2.89 16 26 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 27 H -0.26 -0.01 7.11 99.48 0.71 0.69 16 28 H -0.27 -0.71 7.11 99.48 0.71 0.00 16 29 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.41 -2.29 7.20 -92.71 -0.67 -2.96 16 31 H 0.10 -0.31 6.31 -2.39 -0.02 -0.32 16 32 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 34 H 0.15 -0.92 8.06 -2.91 -0.02 -0.94 16 35 H 0.15 -1.03 8.06 -2.91 -0.02 -1.05 16 36 H 0.15 -0.82 6.66 -2.91 -0.02 -0.84 16 37 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.11 -0.51 7.72 -2.39 -0.02 -0.53 16 39 H 0.20 -1.98 7.01 -2.91 -0.02 -2.00 16 Total: 0.00 -20.23 356.53 -0.23 -20.46 By element: Atomic # 1 Polarization: -10.35 SS G_CDS: -0.16 Total: -10.51 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 3.33 Total: 7.85 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -2.32 Total: -2.60 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.98 Total: -13.30 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.12 Total: -0.04 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -1.14 Total: -1.69 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.07 Total: -0.17 kcal Total: -20.23 -0.23 -20.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.876 kcal (2) G-P(sol) polarization free energy of solvation -20.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds