Wall clock time and date at job start Sat Mar 6 2021 14:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35907 * 117.00108 * 2 1 4 4 C 1.38709 * 120.04953 * 0.02562 * 3 2 1 5 5 C 1.38172 * 119.93903 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.05484 * 359.97438 * 5 4 3 7 7 C 1.38284 * 120.11709 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.97494 * 180.02562 * 7 6 5 9 9 H 1.09006 * 112.84817 * 191.19336 * 8 7 6 10 10 C 1.53775 * 113.61773 * 322.50524 * 8 7 6 11 11 C 1.53781 * 87.08117 * 139.97834 * 10 8 7 12 12 H 1.09004 * 113.61199 * 220.01407 * 11 10 8 13 13 N 1.46497 * 113.68930 * 89.13140 * 11 10 8 14 14 C 1.34778 * 120.00461 * 107.46567 * 13 11 10 15 15 O 1.21276 * 119.99755 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00148 * 179.97438 * 14 13 11 17 17 C 1.53002 * 109.47291 * 294.99801 * 16 14 13 18 18 O 1.42897 * 109.47262 * 174.99779 * 16 14 13 19 19 C 1.35903 * 117.00345 * 204.95283 * 18 16 14 20 20 C 1.38736 * 120.05711 * 174.27477 * 19 18 16 21 21 C 1.38148 * 119.94221 * 179.69806 * 20 19 18 22 22 C 1.38265 * 120.05336 * 0.59181 * 21 20 19 23 23 C 1.50692 * 119.94266 * 179.70157 * 22 21 20 24 24 O 1.42904 * 109.47447 * 119.98031 * 23 22 21 25 25 Si 1.86302 * 109.47286 * 359.97438 * 23 22 21 26 26 C 1.38265 * 120.11338 * 359.68261 * 22 21 20 27 27 C 1.38146 * 120.05709 * 0.02562 * 26 22 21 28 28 C 1.53777 * 87.08325 * 334.56864 * 11 10 8 29 29 C 1.38129 * 120.04842 * 359.76542 * 7 6 5 30 30 H 1.09001 * 109.47254 * 299.99904 * 1 2 3 31 31 H 1.09006 * 109.47238 * 60.00096 * 1 2 3 32 32 H 1.08999 * 109.47234 * 179.97438 * 1 2 3 33 33 H 1.07998 * 120.03295 * 0.02562 * 4 3 2 34 34 H 1.08006 * 119.97150 * 179.97438 * 5 4 3 35 35 H 1.08008 * 119.93863 * 179.97438 * 6 5 4 36 36 H 1.09003 * 113.61383 * 254.52640 * 10 8 7 37 37 H 1.08998 * 113.61265 * 25.42922 * 10 8 7 38 38 H 0.97001 * 119.99796 * 287.46373 * 13 11 10 39 39 H 1.09006 * 109.47131 * 54.99609 * 16 14 13 40 40 H 1.09007 * 109.46638 * 300.00454 * 17 16 14 41 41 H 1.09001 * 109.46933 * 59.99638 * 17 16 14 42 42 H 1.08998 * 109.47206 * 180.02562 * 17 16 14 43 43 H 1.07997 * 120.02476 * 359.97438 * 20 19 18 44 44 H 1.08000 * 119.97157 * 180.27391 * 21 20 19 45 45 H 1.09003 * 109.47159 * 239.97931 * 23 22 21 46 46 H 0.96697 * 113.99949 * 300.00452 * 24 23 22 47 47 H 1.48498 * 109.99885 * 58.67894 * 25 23 22 48 48 H 1.48504 * 110.00097 * 180.02562 * 25 23 22 49 49 H 1.08000 * 119.97562 * 179.97438 * 26 22 21 50 50 H 1.07998 * 120.03097 * 179.97438 * 27 26 22 51 51 H 1.09000 * 113.61209 * 270.88685 * 28 11 10 52 52 H 1.08997 * 113.61396 * 139.98296 * 28 11 10 53 53 H 1.08008 * 120.02302 * 180.27843 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3749 0.0005 5 6 1.9212 3.6048 0.0011 6 6 3.3018 3.6758 0.0016 7 6 4.0562 2.5168 0.0021 8 6 5.5609 2.5979 0.0033 9 1 6.0368 1.6367 -0.1914 10 6 6.1166 3.7474 -0.8538 11 6 7.1513 3.9738 0.2611 12 1 7.3468 5.0260 0.4681 13 7 8.3774 3.1895 0.0944 14 6 9.5217 3.7981 -0.2753 15 8 9.5363 4.9949 -0.4703 16 6 10.7830 2.9913 -0.4462 17 6 11.2058 2.4131 0.9058 18 8 11.8221 3.8328 -0.9503 19 6 12.8247 3.2289 -1.6411 20 6 13.8019 3.9951 -2.2597 21 6 14.8234 3.3786 -2.9560 22 6 14.8655 1.9996 -3.0470 23 6 15.9772 1.3299 -3.8129 24 8 16.7095 0.4711 -2.9364 25 14 17.1195 2.6260 -4.5100 26 6 13.8896 1.2339 -2.4362 27 6 12.8693 1.8454 -1.7336 28 6 6.1372 3.3344 1.2242 29 6 3.4314 1.2849 0.0070 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2130 2.3200 0.0014 34 1 1.3343 4.5115 0.0011 35 1 3.7921 4.6382 0.0016 36 1 6.5548 3.4173 -1.7957 37 1 5.4196 4.5762 -0.9775 38 1 8.3656 2.2321 0.2500 39 1 10.6015 2.1776 -1.1485 40 1 11.3872 3.2268 1.6082 41 1 10.4132 1.7712 1.2903 42 1 12.1184 1.8300 0.7823 43 1 13.7665 5.0724 -2.1931 44 1 15.5869 3.9744 -3.4340 45 1 15.5543 0.7422 -4.6277 46 1 17.1145 0.9275 -2.1863 47 1 17.6780 3.4547 -3.4115 48 1 18.2200 1.9784 -5.2682 49 1 13.9244 0.1570 -2.5090 50 1 12.1071 1.2470 -1.2570 51 1 5.4458 4.0504 1.6685 52 1 6.5919 2.6711 1.9598 53 1 4.0211 0.3800 0.0120 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_10157680.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:37:34 Heat of formation + Delta-G solvation = -50.840113 kcal Electronic energy + Delta-G solvation = -33866.989546 eV Core-core repulsion = 29251.248339 eV Total energy + Delta-G solvation = -4615.741207 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.95740 -41.43169 -40.78454 -39.85034 -38.97537 -37.86205 -37.25524 -34.85506 -33.12571 -32.11562 -32.00331 -31.39464 -30.80310 -28.24226 -26.82593 -26.68053 -26.29661 -25.18740 -24.12503 -23.57254 -22.67398 -22.22924 -21.51131 -20.32252 -19.46898 -18.81825 -18.52638 -18.25381 -17.33150 -17.21954 -16.91943 -16.83252 -16.66939 -16.61455 -16.33088 -16.16553 -15.97760 -15.72832 -15.50801 -15.27685 -15.02719 -14.76321 -14.44079 -14.35832 -14.31480 -14.24274 -14.00296 -13.62990 -13.48230 -13.37874 -13.33954 -13.25742 -13.18519 -12.87875 -12.67699 -12.29933 -12.26547 -12.20381 -12.11819 -11.99828 -11.64808 -11.59910 -11.58052 -11.26857 -10.94523 -10.59438 -10.17921 -10.03686 -9.74343 -9.22293 -9.15505 -4.91181 0.24732 0.32777 0.32944 0.47972 1.33388 1.38446 1.46921 1.60668 1.95976 2.35216 2.47572 2.65026 2.73796 3.42882 3.44708 3.46077 3.64727 3.67577 3.72720 3.73600 3.83812 3.86487 3.88037 3.92930 3.97056 4.09588 4.19041 4.27414 4.27752 4.34460 4.36035 4.38956 4.54440 4.55746 4.58475 4.61960 4.62439 4.66978 4.70429 4.70958 4.79037 4.84641 4.96949 4.99862 5.02339 5.08252 5.10151 5.13857 5.19249 5.29400 5.34509 5.46732 5.48277 5.52080 5.68016 5.70570 5.82601 6.25608 6.43579 6.43980 6.50349 7.08249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.223 4.223 5 C -0.085 4.085 6 C -0.161 4.161 7 C -0.034 4.034 8 C -0.067 4.067 9 H 0.113 0.887 10 C -0.141 4.141 11 C 0.116 3.884 12 H 0.086 0.914 13 N -0.690 5.690 14 C 0.520 3.480 15 O -0.567 6.567 16 C 0.065 3.935 17 C -0.172 4.172 18 O -0.312 6.312 19 C 0.120 3.880 20 C -0.160 4.160 21 C -0.076 4.076 22 C -0.158 4.158 23 C -0.072 4.072 24 O -0.548 6.548 25 Si 0.755 3.245 26 C -0.056 4.056 27 C -0.208 4.208 28 C -0.122 4.122 29 C -0.164 4.164 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.419 0.581 39 H 0.127 0.873 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.135 0.865 44 H 0.148 0.852 45 H 0.127 0.873 46 H 0.385 0.615 47 H -0.285 1.285 48 H -0.303 1.303 49 H 0.140 0.860 50 H 0.154 0.846 51 H 0.102 0.898 52 H 0.092 0.908 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 -3.375 1.081 5.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.241 4.241 5 C -0.103 4.103 6 C -0.179 4.179 7 C -0.034 4.034 8 C -0.085 4.085 9 H 0.131 0.869 10 C -0.180 4.180 11 C 0.011 3.989 12 H 0.104 0.896 13 N -0.344 5.344 14 C 0.306 3.694 15 O -0.444 6.444 16 C 0.005 3.995 17 C -0.230 4.230 18 O -0.225 6.225 19 C 0.075 3.925 20 C -0.178 4.178 21 C -0.094 4.094 22 C -0.159 4.159 23 C -0.182 4.182 24 O -0.356 6.356 25 Si 0.662 3.338 26 C -0.074 4.074 27 C -0.226 4.226 28 C -0.159 4.159 29 C -0.183 4.183 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.258 0.742 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.144 0.856 46 H 0.235 0.765 47 H -0.212 1.212 48 H -0.231 1.231 49 H 0.158 0.842 50 H 0.172 0.828 51 H 0.120 0.880 52 H 0.110 0.890 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.837 -2.637 0.560 4.690 hybrid contribution -0.123 -0.674 1.097 1.294 sum -3.960 -3.312 1.657 5.422 Atomic orbital electron populations 1.23288 0.76696 1.05367 1.02077 1.86039 1.23236 1.27309 1.88796 1.19304 0.92914 0.84592 0.96802 1.21485 1.00910 0.92470 1.09260 1.21236 0.95054 0.97515 0.96461 1.21176 0.93792 0.98828 1.04105 1.19621 0.95612 0.91784 0.96379 1.21633 0.89836 0.99594 0.97433 0.86857 1.23560 0.97811 0.98865 0.97758 1.21858 0.83161 0.96369 0.97533 0.89555 1.45388 1.07349 1.12514 1.69155 1.20505 0.85101 0.87745 0.76090 1.90751 1.85951 1.17028 1.50714 1.22402 0.84999 0.92649 0.99401 1.22367 1.04770 1.02064 0.93773 1.86189 1.32036 1.36757 1.67548 1.19272 0.88802 0.92098 0.92345 1.20586 0.95224 1.00844 1.01184 1.20971 0.97416 0.94004 0.96998 1.20267 0.99012 0.93665 1.02953 1.25054 0.95942 1.01762 0.95403 1.86561 1.70328 1.37511 1.41212 0.94161 0.79322 0.78094 0.82272 1.20988 0.91888 1.00673 0.93877 1.21525 1.02656 0.92744 1.05665 1.23367 0.96702 0.99854 0.96015 1.20512 0.91390 0.98903 1.07453 0.91856 0.91944 0.86679 0.84379 0.84064 0.84382 0.91241 0.88331 0.74239 0.85598 0.92162 0.87195 0.89716 0.84740 0.83526 0.85569 0.76536 1.21187 1.23141 0.84246 0.82816 0.88001 0.88973 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.56 10.50 -92.50 -0.97 -2.53 16 3 C 0.11 0.46 6.69 22.50 0.15 0.61 16 4 C -0.22 -0.39 9.04 22.37 0.20 -0.19 16 5 C -0.08 -0.01 10.04 22.25 0.22 0.22 16 6 C -0.16 0.10 8.61 22.28 0.19 0.29 16 7 C -0.03 0.02 5.29 -19.88 -0.11 -0.09 16 8 C -0.07 0.34 3.86 -11.02 -0.04 0.30 16 9 H 0.11 -0.90 8.09 -2.38 -0.02 -0.92 16 10 C -0.14 0.45 7.25 31.12 0.23 0.67 16 11 C 0.12 -0.31 4.32 45.52 0.20 -0.12 16 12 H 0.09 0.20 7.46 -2.39 -0.02 0.18 16 13 N -0.69 2.97 5.23 -440.05 -2.30 0.67 16 14 C 0.52 1.64 7.18 87.66 0.63 2.26 16 15 O -0.57 -8.10 16.11 15.97 0.26 -7.84 16 16 C 0.06 -0.08 2.64 29.85 0.08 0.00 16 17 C -0.17 1.02 9.13 71.98 0.66 1.67 16 18 O -0.31 -1.99 9.34 -73.47 -0.69 -2.68 16 19 C 0.12 0.44 6.60 22.51 0.15 0.59 16 20 C -0.16 -0.54 9.99 22.37 0.22 -0.32 16 21 C -0.08 -0.02 8.66 22.25 0.19 0.17 16 22 C -0.16 0.02 5.39 -19.85 -0.11 -0.09 16 23 C -0.07 0.07 2.82 71.23 0.20 0.27 16 24 O -0.55 -1.01 12.77 -148.98 -1.90 -2.91 16 25 Si 0.76 -1.05 29.78 68.60 2.04 1.00 16 26 C -0.06 0.03 9.60 22.25 0.21 0.25 16 27 C -0.21 0.19 8.24 22.37 0.18 0.37 16 28 C -0.12 0.76 7.29 31.12 0.23 0.99 16 29 C -0.16 -0.38 9.65 22.37 0.22 -0.17 16 30 H 0.06 -0.27 7.66 -2.39 -0.02 -0.29 16 31 H 0.06 -0.26 7.66 -2.38 -0.02 -0.28 16 32 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.14 -0.23 6.30 -2.91 -0.02 -0.25 16 34 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 35 H 0.14 -0.54 6.65 -2.91 -0.02 -0.55 16 36 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.10 -0.31 6.31 -2.39 -0.02 -0.33 16 38 H 0.42 -4.80 8.49 -92.71 -0.79 -5.59 16 39 H 0.13 -0.89 6.31 -2.38 -0.02 -0.90 16 40 H 0.06 -0.10 8.14 -2.38 -0.02 -0.12 16 41 H 0.11 -1.34 7.93 -2.39 -0.02 -1.36 16 42 H 0.08 -0.56 6.91 -2.39 -0.02 -0.57 16 43 H 0.13 0.40 8.06 -2.91 -0.02 0.37 16 44 H 0.15 -0.51 4.87 -2.91 -0.01 -0.52 16 45 H 0.13 -0.36 7.96 -2.39 -0.02 -0.38 16 46 H 0.39 -1.27 8.70 -74.06 -0.64 -1.92 16 47 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 48 H -0.30 -1.93 7.11 99.48 0.71 -1.22 16 49 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 50 H 0.15 -1.00 5.43 -2.91 -0.02 -1.02 16 51 H 0.10 -0.60 7.72 -2.39 -0.02 -0.62 16 52 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 53 H 0.13 0.04 8.05 -2.91 -0.02 0.01 16 Total: 0.00 -25.55 429.28 1.03 -24.52 By element: Atomic # 1 Polarization: -18.55 SS G_CDS: -0.43 Total: -18.98 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.02 Total: 8.76 kcal Atomic # 7 Polarization: 2.97 SS G_CDS: -2.30 Total: 0.67 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -3.30 Total: -15.97 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.04 Total: 1.00 kcal Total: -25.55 1.03 -24.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_10157680.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.321 kcal (2) G-P(sol) polarization free energy of solvation -25.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds