Wall clock time and date at job start Sat Mar 6 2021 14:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35892 * 117.00095 * 2 1 4 4 C 1.38721 * 120.05364 * 0.02562 * 3 2 1 5 5 C 1.38161 * 119.94098 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.05619 * 359.72294 * 5 4 3 7 7 C 1.38284 * 120.11119 * 0.54939 * 6 5 4 8 8 C 1.50696 * 119.97151 * 179.72151 * 7 6 5 9 9 H 1.09000 * 112.85168 * 190.92475 * 8 7 6 10 10 C 1.53778 * 113.61677 * 322.23026 * 8 7 6 11 11 C 1.53785 * 87.08095 * 139.98051 * 10 8 7 12 12 H 1.09002 * 113.69022 * 220.01197 * 11 10 8 13 13 N 1.46494 * 113.61533 * 89.11821 * 11 10 8 14 14 C 1.34780 * 120.00436 * 107.50219 * 13 11 10 15 15 O 1.21703 * 119.99263 * 354.48090 * 14 13 11 16 16 C 1.46673 * 120.00279 * 174.48040 * 14 13 11 17 17 C 1.37872 * 126.23659 * 4.91182 * 16 14 13 18 18 C 1.39829 * 107.08839 * 179.84958 * 17 16 14 19 19 C 1.50702 * 126.07062 * 180.14087 * 18 17 16 20 20 O 1.42894 * 109.47093 * 65.29646 * 19 18 17 21 21 Si 1.86300 * 109.47144 * 185.30143 * 19 18 17 22 22 C 1.35455 * 107.86301 * 0.41504 * 18 17 16 23 23 N 1.35531 * 108.87212 * 359.74313 * 22 18 17 24 24 C 1.46504 * 125.67950 * 179.97438 * 23 22 18 25 25 C 1.53781 * 87.08114 * 334.56773 * 11 10 8 26 26 C 1.38122 * 120.05459 * 359.45250 * 7 6 5 27 27 H 1.08994 * 109.47036 * 60.00300 * 1 2 3 28 28 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47332 * 300.00040 * 1 2 3 30 30 H 1.07992 * 120.02767 * 359.95335 * 4 3 2 31 31 H 1.08003 * 119.97452 * 180.02562 * 5 4 3 32 32 H 1.08005 * 119.94401 * 180.29814 * 6 5 4 33 33 H 1.08998 * 113.61658 * 254.52629 * 10 8 7 34 34 H 1.09004 * 113.61279 * 25.43413 * 10 8 7 35 35 H 0.97007 * 120.00155 * 287.50333 * 13 11 10 36 36 H 1.08002 * 126.44878 * 359.96316 * 17 16 14 37 37 H 1.09006 * 109.46641 * 305.29934 * 19 18 17 38 38 H 0.96698 * 114.00060 * 60.00750 * 20 19 18 39 39 H 1.48495 * 110.00198 * 58.67849 * 21 19 18 40 40 H 1.48504 * 109.99720 * 179.97438 * 21 19 18 41 41 H 1.08000 * 125.56245 * 179.71220 * 22 18 17 42 42 H 1.08999 * 109.46756 * 272.01619 * 24 23 22 43 43 H 1.09004 * 109.46800 * 32.01172 * 24 23 22 44 44 H 1.09000 * 109.47445 * 152.01047 * 24 23 22 45 45 H 1.09004 * 113.61738 * 270.88465 * 25 11 10 46 46 H 1.09000 * 113.68924 * 139.99221 * 25 11 10 47 47 H 1.08007 * 120.02677 * 180.29154 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3749 0.0005 5 6 1.9213 3.6047 0.0011 6 6 3.3019 3.6757 0.0069 7 6 4.0562 2.5167 0.0007 8 6 5.5610 2.5978 0.0006 9 1 6.0367 1.6367 -0.1948 10 6 6.1160 3.7475 -0.8566 11 6 7.1517 3.9735 0.2576 12 1 7.3484 5.0252 0.4659 13 7 8.3767 3.1882 0.0881 14 6 9.5211 3.7962 -0.2824 15 8 9.5156 4.9779 -0.5735 16 6 10.7730 3.0337 -0.3347 17 6 10.9108 1.6779 -0.1258 18 6 12.2678 1.3751 -0.2746 19 6 12.8924 0.0103 -0.1389 20 8 12.4085 -0.8406 -1.1799 21 14 14.7448 0.1595 -0.2694 22 6 12.9221 2.5272 -0.5562 23 7 12.0252 3.5424 -0.5955 24 6 12.3365 4.9476 -0.8695 25 6 6.1382 3.3338 1.2213 26 6 3.4315 1.2848 0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2131 2.3200 0.0002 31 1 1.3344 4.5114 0.0019 32 1 3.7923 4.6380 0.0121 33 1 6.5534 3.4178 -1.7989 34 1 5.4189 4.5764 -0.9794 35 1 8.3643 2.2306 0.2426 36 1 10.1194 0.9808 0.1069 37 1 12.6295 -0.4149 0.8297 38 1 12.6071 -0.5233 -2.0715 39 1 15.2571 1.0672 0.7882 40 1 15.3728 -1.1797 -0.1366 41 1 13.9852 2.6214 -0.7218 42 1 12.5906 5.4518 0.0629 43 1 13.1814 5.0053 -1.5558 44 1 11.4693 5.4309 -1.3194 45 1 5.4472 4.0496 1.6665 46 1 6.5923 2.6700 1.9570 47 1 4.0211 0.3798 0.0000 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_10803934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:37:41 Heat of formation + Delta-G solvation = 5.807486 kcal Electronic energy + Delta-G solvation = -28885.468518 eV Core-core repulsion = 24809.203775 eV Total energy + Delta-G solvation = -4076.264743 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.57383 -41.56200 -40.69810 -39.45244 -37.89511 -37.61329 -34.85346 -33.70761 -32.20250 -31.22854 -30.46865 -28.32795 -28.23197 -26.70321 -26.25607 -25.59771 -23.99004 -23.53329 -22.30122 -21.28418 -20.66809 -20.10720 -18.88737 -18.69462 -17.73568 -17.25056 -17.04985 -16.87018 -16.77068 -16.67615 -16.62352 -15.95479 -15.85212 -15.63561 -15.34491 -15.16407 -14.95294 -14.45172 -14.43581 -14.31674 -14.07450 -14.01610 -13.49749 -13.48594 -13.28415 -13.22872 -13.20254 -13.10640 -12.68315 -12.30820 -12.25670 -12.12277 -11.92605 -11.65564 -11.59420 -11.28307 -11.16076 -10.29154 -10.20446 -9.75595 -9.70312 -9.26433 -9.15972 -4.94130 0.31662 0.38916 0.47159 1.42784 1.52545 1.56556 1.74325 2.05377 2.25809 2.29166 2.34694 2.73076 3.44252 3.62826 3.68764 3.71260 3.74631 3.85164 3.87125 3.95330 4.04712 4.08530 4.18171 4.25249 4.27045 4.34033 4.37157 4.38120 4.40990 4.53641 4.60644 4.63338 4.67009 4.70070 4.73822 4.77167 4.77503 4.84269 4.96330 5.01325 5.08878 5.13028 5.20345 5.33627 5.46602 5.51125 5.66334 5.70207 5.82122 5.88372 6.17230 6.42904 6.43238 6.91322 7.08592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.222 4.222 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.034 4.034 8 C -0.069 4.069 9 H 0.106 0.894 10 C -0.138 4.138 11 C 0.121 3.879 12 H 0.092 0.908 13 N -0.691 5.691 14 C 0.590 3.410 15 O -0.580 6.580 16 C -0.079 4.079 17 C -0.113 4.113 18 C -0.221 4.221 19 C -0.037 4.037 20 O -0.560 6.560 21 Si 0.780 3.220 22 C 0.036 3.964 23 N -0.412 5.412 24 C 0.058 3.942 25 C -0.123 4.123 26 C -0.167 4.167 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.414 0.586 36 H 0.155 0.845 37 H 0.101 0.899 38 H 0.393 0.607 39 H -0.284 1.284 40 H -0.305 1.305 41 H 0.203 0.797 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 1.194 -1.189 1.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.240 4.240 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.034 4.034 8 C -0.087 4.087 9 H 0.124 0.876 10 C -0.177 4.177 11 C 0.016 3.984 12 H 0.111 0.889 13 N -0.342 5.342 14 C 0.380 3.620 15 O -0.462 6.462 16 C -0.192 4.192 17 C -0.139 4.139 18 C -0.227 4.227 19 C -0.148 4.148 20 O -0.368 6.368 21 Si 0.686 3.314 22 C -0.101 4.101 23 N -0.084 5.084 24 C -0.082 4.082 25 C -0.161 4.161 26 C -0.186 4.186 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.251 0.749 36 H 0.172 0.828 37 H 0.118 0.882 38 H 0.243 0.757 39 H -0.211 1.211 40 H -0.233 1.233 41 H 0.219 0.781 42 H 0.099 0.901 43 H 0.134 0.866 44 H 0.106 0.894 45 H 0.125 0.875 46 H 0.104 0.896 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.710 1.784 -0.546 1.996 hybrid contribution -0.997 -0.480 0.494 1.212 sum -0.287 1.304 -0.052 1.336 Atomic orbital electron populations 1.23293 0.76643 1.05375 1.02120 1.86040 1.23295 1.27328 1.88786 1.19290 0.92800 0.84679 0.96787 1.21490 1.00930 0.92404 1.09209 1.21251 0.94986 0.97553 0.96331 1.21177 0.93807 0.98734 1.04052 1.19606 0.95452 0.91897 0.96433 1.21609 0.90003 0.99480 0.97617 0.87605 1.23547 0.97783 0.98741 0.97622 1.21860 0.82947 0.96262 0.97378 0.88941 1.45250 1.07621 1.12270 1.69041 1.17167 0.83143 0.85690 0.76037 1.90770 1.86997 1.17291 1.51160 1.20027 0.86314 0.93802 1.19067 1.21415 0.97516 0.92258 1.02732 1.19900 0.94432 0.95515 1.12846 1.24471 1.10115 0.87184 0.92996 1.86444 1.82482 1.49448 1.18433 0.93994 0.72065 0.77991 0.87332 1.22347 0.96525 0.86047 1.05154 1.44033 1.05428 1.09030 1.49862 1.22482 1.04679 0.77339 1.03691 1.23385 0.96858 0.99901 0.95953 1.20508 0.91522 0.98870 1.07663 0.91864 0.86703 0.91814 0.84235 0.83811 0.84151 0.91509 0.87903 0.74862 0.82759 0.88158 0.75741 1.21061 1.23330 0.78052 0.90129 0.86584 0.89367 0.87540 0.89587 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.06 10.50 -92.34 -0.97 -3.03 16 3 C 0.11 0.63 6.69 22.51 0.15 0.78 16 4 C -0.22 -0.60 9.04 22.37 0.20 -0.39 16 5 C -0.08 -0.07 10.04 22.25 0.22 0.16 16 6 C -0.16 -0.06 8.59 22.28 0.19 0.13 16 7 C -0.03 -0.05 5.29 -19.88 -0.11 -0.15 16 8 C -0.07 0.16 3.86 -11.01 -0.04 0.11 16 9 H 0.11 -0.37 8.09 -2.39 -0.02 -0.39 16 10 C -0.14 0.16 7.25 31.12 0.23 0.39 16 11 C 0.12 -0.06 4.29 45.52 0.20 0.13 16 12 H 0.09 0.25 7.53 -2.39 -0.02 0.24 16 13 N -0.69 -0.21 5.25 -443.99 -2.33 -2.53 16 14 C 0.59 3.58 7.77 86.45 0.67 4.26 16 15 O -0.58 -7.04 14.25 -4.36 -0.06 -7.10 16 16 C -0.08 -0.33 6.89 40.35 0.28 -0.05 16 17 C -0.11 -0.19 10.29 22.57 0.23 0.04 16 18 C -0.22 -0.02 5.43 -20.12 -0.11 -0.13 16 19 C -0.04 0.03 3.02 71.24 0.22 0.25 16 20 O -0.56 -0.20 12.88 -148.98 -1.92 -2.12 16 21 Si 0.78 -2.57 30.60 68.60 2.10 -0.48 16 22 C 0.04 -0.07 9.94 83.48 0.83 0.76 16 23 N -0.41 -0.69 3.16 -534.30 -1.69 -2.38 16 24 C 0.06 -0.09 10.70 127.77 1.37 1.27 16 25 C -0.12 0.45 7.29 31.12 0.23 0.68 16 26 C -0.17 -0.76 9.65 22.36 0.22 -0.55 16 27 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 28 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 30 H 0.14 -0.14 6.30 -2.91 -0.02 -0.16 16 31 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 32 H 0.14 -0.47 6.67 -2.91 -0.02 -0.49 16 33 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.10 -0.24 6.32 -2.38 -0.02 -0.25 16 35 H 0.41 -1.65 7.60 -92.70 -0.70 -2.36 16 36 H 0.15 -0.24 7.45 -2.91 -0.02 -0.26 16 37 H 0.10 0.08 7.96 -2.38 -0.02 0.06 16 38 H 0.39 -2.92 8.70 -74.06 -0.64 -3.57 16 39 H -0.28 -0.33 7.11 99.48 0.71 0.38 16 40 H -0.31 -1.53 7.11 99.48 0.71 -0.82 16 41 H 0.20 -1.80 6.21 -2.91 -0.02 -1.82 16 42 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.12 -0.92 8.14 -2.38 -0.02 -0.94 16 44 H 0.09 0.28 6.11 -2.39 -0.01 0.27 16 45 H 0.11 -0.47 7.71 -2.38 -0.02 -0.49 16 46 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.13 0.42 8.05 -2.91 -0.02 0.40 16 Total: 0.00 -22.14 385.48 0.91 -21.22 By element: Atomic # 1 Polarization: -12.07 SS G_CDS: -0.30 Total: -12.37 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.08 Total: 8.78 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -4.02 Total: -4.91 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -2.95 Total: -12.25 kcal Atomic # 14 Polarization: -2.57 SS G_CDS: 2.10 Total: -0.48 kcal Total: -22.14 0.91 -21.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_10803934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.030 kcal (2) G-P(sol) polarization free energy of solvation -22.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds