Wall clock time and date at job start Sat Mar 6 2021 14:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38705 * 120.05898 * 180.29486 * 3 2 1 5 5 C 1.38173 * 119.94106 * 180.29847 * 4 3 2 6 6 C 1.50701 * 119.96798 * 179.70184 * 5 4 3 7 7 H 1.09002 * 112.85448 * 348.77906 * 6 5 4 8 8 C 1.53776 * 113.61367 * 119.98372 * 6 5 4 9 9 C 1.53781 * 87.08289 * 139.97795 * 8 6 5 10 10 H 1.09002 * 113.61400 * 220.01719 * 9 8 6 11 11 N 1.46501 * 113.61477 * 89.19993 * 9 8 6 12 12 C 1.34779 * 120.00196 * 154.99645 * 11 9 8 13 13 O 1.21287 * 119.99491 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00355 * 179.97438 * 12 11 9 15 15 C 1.50695 * 109.47450 * 180.02562 * 14 12 11 16 16 C 1.38238 * 119.99885 * 269.73399 * 15 14 12 17 17 C 1.38239 * 119.99912 * 179.81246 * 16 15 14 18 18 C 1.38233 * 119.99567 * 0.41013 * 17 16 15 19 19 C 1.50702 * 119.99584 * 179.79414 * 18 17 16 20 20 O 1.42899 * 109.47197 * 120.02646 * 19 18 17 21 21 Si 1.86301 * 109.47249 * 0.02562 * 19 18 17 22 22 C 1.38227 * 120.00410 * 359.81958 * 18 17 16 23 23 C 1.38234 * 120.00067 * 90.00050 * 15 14 12 24 24 C 1.53771 * 87.08081 * 334.56416 * 9 8 6 25 25 C 1.38232 * 120.05858 * 359.68223 * 5 4 3 26 26 C 1.38294 * 120.11124 * 0.02562 * 25 5 4 27 27 C 1.38122 * 120.05499 * 359.97438 * 26 25 5 28 28 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 30 30 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 31 31 H 1.07997 * 120.03207 * 0.02562 * 4 3 2 32 32 H 1.09010 * 113.61357 * 254.52629 * 8 6 5 33 33 H 1.09000 * 113.61779 * 25.34078 * 8 6 5 34 34 H 0.97003 * 119.99988 * 334.99724 * 11 9 8 35 35 H 1.08997 * 109.47156 * 300.01184 * 14 12 11 36 36 H 1.09010 * 109.46714 * 60.00308 * 14 12 11 37 37 H 1.08004 * 120.00212 * 359.97438 * 16 15 14 38 38 H 1.07999 * 119.99919 * 180.20800 * 17 16 15 39 39 H 1.08996 * 109.47128 * 240.02426 * 19 18 17 40 40 H 0.96701 * 113.99650 * 299.99806 * 20 19 18 41 41 H 1.48507 * 109.99954 * 58.68004 * 21 19 18 42 42 H 1.48495 * 110.00185 * 179.97438 * 21 19 18 43 43 H 1.08009 * 120.00092 * 179.97438 * 22 18 17 44 44 H 1.08000 * 120.00007 * 359.97438 * 23 15 14 45 45 H 1.09003 * 113.61799 * 270.88572 * 24 9 8 46 46 H 1.09011 * 113.61394 * 139.97820 * 24 9 8 47 47 H 1.08002 * 119.94710 * 180.02562 * 25 5 4 48 48 H 1.07999 * 119.97251 * 180.02562 * 26 25 5 49 49 H 1.08002 * 120.02504 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2849 -0.0062 5 6 4.0559 2.5173 0.0001 6 6 5.5607 2.5983 0.0002 7 1 6.0365 1.6363 0.1905 8 6 6.1377 3.3409 -1.2166 9 6 7.1512 3.9755 -0.2497 10 1 7.3469 5.0287 -0.4516 11 7 8.3772 3.1904 -0.0862 12 6 9.5213 3.7972 0.2871 13 8 9.5358 4.9932 0.4881 14 6 10.7823 2.9895 0.4559 15 6 11.9088 3.8984 0.8753 16 6 12.7041 4.5003 -0.0818 17 6 13.7350 5.3372 0.3028 18 6 13.9758 5.5653 1.6447 19 6 15.1026 6.4740 2.0641 20 8 14.5769 7.5673 2.8194 21 14 15.9712 7.1256 0.5503 22 6 13.1835 4.9597 2.6019 23 6 12.1502 4.1259 2.2173 24 6 6.1159 3.7437 0.8633 25 6 3.3019 3.6758 0.0058 26 6 1.9208 3.6048 0.0059 27 6 1.2914 2.3753 -0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0207 0.3801 -0.0114 32 1 6.5929 2.6811 -1.9553 33 1 5.4460 4.0579 -1.6588 34 1 8.3656 2.2338 -0.2466 35 1 10.6265 2.2280 1.2201 36 1 11.0353 2.5091 -0.4893 37 1 12.5184 4.3189 -1.1302 38 1 14.3542 5.8101 -0.4450 39 1 15.8103 5.9160 2.6772 40 1 13.9387 8.1089 2.3351 41 1 15.0097 7.8614 -0.3097 42 1 17.0841 8.0236 0.9504 43 1 13.3720 5.1377 3.6504 44 1 11.5313 3.6525 2.9651 45 1 5.4187 4.5719 0.9907 46 1 6.5535 3.4089 1.8039 47 1 3.7921 4.6381 0.0103 48 1 1.3339 4.5113 0.0100 49 1 0.2127 2.3204 -0.0007 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_12335836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:38:03 Heat of formation + Delta-G solvation = -23.598121 kcal Electronic energy + Delta-G solvation = -29456.554764 eV Core-core repulsion = 25316.214669 eV Total energy + Delta-G solvation = -4140.340095 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.69965 -41.05762 -40.45867 -39.52710 -37.95883 -37.68028 -34.52946 -33.93433 -32.13092 -31.91830 -31.00857 -29.64883 -28.24352 -26.68526 -26.35734 -25.39044 -23.80135 -23.59935 -22.66785 -22.12836 -21.35642 -20.23998 -18.81086 -18.56758 -18.04856 -17.33413 -17.23045 -16.93229 -16.88523 -16.67887 -16.56383 -16.21135 -16.17464 -15.87092 -15.57242 -15.36115 -14.88670 -14.72836 -14.48547 -14.42795 -14.32947 -14.00084 -13.97478 -13.51519 -13.36061 -13.27549 -13.21141 -12.99396 -12.81495 -12.67714 -12.29989 -12.26403 -12.10710 -12.00678 -11.65134 -11.62286 -11.57338 -11.25365 -10.99291 -10.62847 -10.05846 -9.86010 -9.75351 -9.60697 -9.16664 -4.95641 0.24941 0.31640 0.46543 0.46947 1.29550 1.58979 1.63514 1.92990 2.14722 2.34400 2.72657 2.79314 3.38367 3.48183 3.61988 3.70407 3.73375 3.80717 3.86843 3.92009 3.96666 4.04959 4.07111 4.09604 4.17918 4.27035 4.33969 4.37786 4.38234 4.48475 4.53900 4.55148 4.62795 4.65107 4.68045 4.70525 4.73779 4.78196 4.87085 4.97871 5.02024 5.04326 5.09989 5.10302 5.18388 5.33222 5.39361 5.48072 5.54281 5.56876 5.60745 5.71277 5.81324 6.03273 6.42387 6.42652 6.57091 7.28720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.110 3.890 4 C -0.164 4.164 5 C -0.034 4.034 6 C -0.066 4.066 7 H 0.112 0.888 8 C -0.123 4.123 9 C 0.117 3.883 10 H 0.082 0.918 11 N -0.702 5.702 12 C 0.515 3.485 13 O -0.581 6.581 14 C -0.098 4.098 15 C -0.071 4.071 16 C -0.110 4.110 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.085 4.085 20 O -0.550 6.550 21 Si 0.772 3.228 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.085 4.085 27 C -0.222 4.222 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.418 0.582 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.384 0.616 41 H -0.290 1.290 42 H -0.301 1.301 43 H 0.122 0.878 44 H 0.131 0.869 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.137 0.863 48 H 0.142 0.858 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -6.349 -3.661 7.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.183 4.183 5 C -0.035 4.035 6 C -0.084 4.084 7 H 0.130 0.870 8 C -0.161 4.161 9 C 0.012 3.988 10 H 0.100 0.900 11 N -0.354 5.354 12 C 0.303 3.697 13 O -0.460 6.460 14 C -0.137 4.137 15 C -0.072 4.072 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.126 4.126 19 C -0.194 4.194 20 O -0.358 6.358 21 Si 0.678 3.322 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.180 4.180 25 C -0.180 4.180 26 C -0.103 4.103 27 C -0.241 4.241 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.256 0.744 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.233 0.767 41 H -0.217 1.217 42 H -0.230 1.230 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.113 0.887 46 H 0.086 0.914 47 H 0.155 0.845 48 H 0.159 0.841 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.566 -5.263 -3.526 6.525 hybrid contribution -1.478 0.653 0.660 1.745 sum -3.044 -4.609 -2.866 6.223 Atomic orbital electron populations 1.23291 0.76670 1.05394 1.02085 1.86040 1.23261 1.27269 1.88782 1.19299 0.92884 0.84610 0.96753 1.20512 0.91428 0.98872 1.07486 1.19640 0.95672 0.91803 0.96339 1.21614 0.89757 0.99559 0.97471 0.86951 1.23351 0.96921 0.99788 0.96047 1.21765 0.83790 0.96269 0.97025 0.89974 1.45596 1.07854 1.12493 1.69455 1.21060 0.85505 0.87917 0.75185 1.90745 1.86267 1.17483 1.51465 1.20769 0.88664 0.97364 1.06922 1.19587 0.96087 0.98132 0.93367 1.21239 0.94845 0.96445 1.00251 1.21163 0.98528 0.99323 0.95044 1.20334 0.98660 0.99668 0.93975 1.25286 0.97862 0.89127 1.07113 1.86550 1.63341 1.42780 1.43160 0.94113 0.77440 0.85009 0.75662 1.21078 0.95420 0.96417 0.99659 1.21236 0.97520 0.98613 0.96060 1.23545 0.97970 0.98710 0.97811 1.21164 0.93824 0.98782 1.04208 1.21235 0.95006 0.97559 0.96468 1.21484 1.00924 0.92428 1.09238 0.86640 0.91934 0.91848 0.84834 0.89178 0.88350 0.74439 0.85231 0.84679 0.83988 0.84212 0.85697 0.76695 1.21657 1.22979 0.85949 0.85119 0.88728 0.91379 0.84536 0.84052 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.68 10.50 -92.47 -0.97 -2.65 16 3 C 0.11 0.52 6.69 22.51 0.15 0.67 16 4 C -0.16 -0.50 9.65 22.37 0.22 -0.29 16 5 C -0.03 -0.01 5.29 -19.88 -0.11 -0.12 16 6 C -0.07 0.27 3.86 -11.01 -0.04 0.23 16 7 H 0.11 -0.76 8.09 -2.39 -0.02 -0.78 16 8 C -0.12 0.64 7.29 31.12 0.23 0.87 16 9 C 0.12 -0.24 4.32 45.51 0.20 -0.04 16 10 H 0.08 0.26 7.46 -2.39 -0.02 0.24 16 11 N -0.70 3.14 5.27 -440.04 -2.32 0.82 16 12 C 0.52 0.46 7.82 87.66 0.69 1.15 16 13 O -0.58 -6.79 15.63 -3.05 -0.05 -6.84 16 14 C -0.10 0.53 5.83 29.10 0.17 0.70 16 15 C -0.07 -0.08 4.37 -19.87 -0.09 -0.17 16 16 C -0.11 -0.12 9.70 22.27 0.22 0.10 16 17 C -0.12 -0.22 8.67 22.27 0.19 -0.02 16 18 C -0.13 -0.44 5.39 -19.87 -0.11 -0.55 16 19 C -0.09 -0.21 2.82 71.24 0.20 -0.01 16 20 O -0.55 -3.45 12.77 -148.98 -1.90 -5.36 16 21 Si 0.77 0.33 29.79 68.60 2.04 2.38 16 22 C -0.11 -0.50 9.61 22.27 0.21 -0.28 16 23 C -0.12 -0.35 9.70 22.27 0.22 -0.14 16 24 C -0.14 0.31 7.25 31.12 0.23 0.54 16 25 C -0.16 -0.04 8.61 22.28 0.19 0.16 16 26 C -0.08 -0.06 10.04 22.26 0.22 0.16 16 27 C -0.22 -0.50 9.04 22.37 0.20 -0.29 16 28 H 0.12 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 30 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 31 H 0.13 0.14 8.05 -2.91 -0.02 0.11 16 32 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 33 H 0.10 -0.46 7.72 -2.39 -0.02 -0.47 16 34 H 0.42 -4.61 8.70 -92.71 -0.81 -5.41 16 35 H 0.13 -1.31 8.08 -2.39 -0.02 -1.33 16 36 H 0.14 -1.50 8.09 -2.38 -0.02 -1.52 16 37 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 38 H 0.14 -0.29 4.88 -2.91 -0.01 -0.31 16 39 H 0.13 0.05 7.96 -2.39 -0.02 0.03 16 40 H 0.38 0.64 8.70 -74.06 -0.64 0.00 16 41 H -0.29 -1.48 7.11 99.48 0.71 -0.78 16 42 H -0.30 -2.31 7.11 99.48 0.71 -1.60 16 43 H 0.12 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 45 H 0.09 -0.18 6.31 -2.39 -0.02 -0.20 16 46 H 0.07 -0.04 8.14 -2.38 -0.02 -0.06 16 47 H 0.14 -0.38 6.65 -2.91 -0.02 -0.40 16 48 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 49 H 0.14 -0.18 6.30 -2.91 -0.02 -0.20 16 Total: 0.00 -23.69 402.93 0.68 -23.01 By element: Atomic # 1 Polarization: -14.67 SS G_CDS: -0.43 Total: -15.10 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.30 Total: 3.74 kcal Atomic # 7 Polarization: 3.14 SS G_CDS: -2.32 Total: 0.82 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -2.92 Total: -14.84 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: 2.04 Total: 2.38 kcal Total: -23.69 0.68 -23.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_12335836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.584 kcal (2) G-P(sol) polarization free energy of solvation -23.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds