Wall clock time and date at job start Sat Mar 6 2021 14:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99862 * 2 1 4 4 C 1.38717 * 120.05331 * 179.97438 * 3 2 1 5 5 C 1.38158 * 119.94370 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.97457 * 179.97438 * 5 4 3 7 7 H 1.09004 * 112.84361 * 348.80751 * 6 5 4 8 8 C 1.53775 * 113.61635 * 120.00378 * 6 5 4 9 9 C 1.53774 * 87.08413 * 139.98497 * 8 6 5 10 10 H 1.09002 * 113.61753 * 219.93859 * 9 8 6 11 11 N 1.46494 * 113.61655 * 89.11225 * 9 8 6 12 12 C 1.34778 * 119.99820 * 155.00000 * 11 9 8 13 13 O 1.21697 * 120.00213 * 0.02562 * 12 11 9 14 14 C 1.46436 * 119.99879 * 180.02562 * 12 11 9 15 15 C 1.34814 * 119.99794 * 180.02562 * 14 12 11 16 16 C 1.47206 * 119.99752 * 179.97438 * 15 14 12 17 17 C 1.39836 * 120.16774 * 0.27872 * 16 15 14 18 18 C 1.37893 * 119.82402 * 180.23013 * 17 16 15 19 19 C 1.38403 * 120.16807 * 359.46824 * 18 17 16 20 20 C 1.50700 * 119.82534 * 180.27866 * 19 18 17 21 21 O 1.42901 * 109.47331 * 300.00138 * 20 19 18 22 22 Si 1.86307 * 109.47038 * 179.97438 * 20 19 18 23 23 C 1.38405 * 120.34861 * 0.30391 * 19 18 17 24 24 C 1.37887 * 120.16795 * 359.95072 * 23 19 18 25 25 C 1.53781 * 113.61728 * 217.50247 * 6 5 4 26 26 C 1.38244 * 120.05594 * 0.26308 * 5 4 3 27 27 C 1.38293 * 120.11191 * 359.48750 * 26 5 4 28 28 C 1.38119 * 120.05013 * 0.50823 * 27 26 5 29 29 H 1.09002 * 109.47343 * 59.99902 * 1 2 3 30 30 H 1.09000 * 109.47446 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46967 * 299.99488 * 1 2 3 32 32 H 1.08000 * 120.02990 * 0.05666 * 4 3 2 33 33 H 1.09006 * 113.61361 * 25.43530 * 8 6 5 34 34 H 1.09000 * 113.69488 * 254.54695 * 8 6 5 35 35 H 0.96995 * 120.00163 * 335.00724 * 11 9 8 36 36 H 1.07996 * 120.00111 * 359.97438 * 14 12 11 37 37 H 1.07996 * 120.00090 * 0.02562 * 15 14 12 38 38 H 1.08004 * 120.09359 * 359.97438 * 17 16 15 39 39 H 1.08002 * 119.91884 * 179.75241 * 18 17 16 40 40 H 1.09000 * 109.47531 * 60.00493 * 20 19 18 41 41 H 0.96700 * 113.99633 * 180.02562 * 21 20 19 42 42 H 1.48503 * 109.99752 * 60.00278 * 22 20 19 43 43 H 1.48503 * 109.99810 * 181.31586 * 22 20 19 44 44 H 1.07995 * 119.91286 * 179.97438 * 23 19 18 45 45 H 1.08003 * 120.08925 * 180.02562 * 24 23 19 46 46 H 1.09003 * 113.61303 * 105.46664 * 25 6 5 47 47 H 1.08996 * 113.61319 * 334.56912 * 25 6 5 48 48 H 1.08004 * 119.94876 * 179.71474 * 26 5 4 49 49 H 1.07996 * 119.97653 * 180.27452 * 27 26 5 50 50 H 1.08009 * 120.02497 * 179.72424 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4312 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 5.5608 2.5981 0.0022 7 1 6.0363 1.6369 0.1976 8 6 6.1390 3.3349 -1.2174 9 6 7.1517 3.9740 -0.2527 10 1 7.3486 5.0258 -0.4602 11 7 8.3765 3.1886 -0.0827 12 6 9.5206 3.7964 0.2890 13 8 9.5360 4.9976 0.4838 14 6 10.7451 3.0114 0.4584 15 6 11.8894 3.6194 0.8307 16 6 13.1202 2.8302 1.0016 17 6 13.1079 1.4507 0.7730 18 6 14.2638 0.7175 0.9398 19 6 15.4366 1.3453 1.3217 20 6 16.6969 0.5375 1.4956 21 8 16.4909 -0.4559 2.5019 22 14 18.0900 1.6630 2.0089 23 6 15.4580 2.7111 1.5451 24 6 14.3091 3.4571 1.3876 25 6 6.1152 3.7474 0.8605 26 6 3.3020 3.6757 0.0066 27 6 1.9209 3.6047 0.0008 28 6 1.2915 2.3753 0.0002 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0207 0.3799 0.0000 33 1 5.4483 4.0510 -1.6628 34 1 6.5950 2.6728 -1.9535 35 1 8.3642 2.2312 -0.2377 36 1 10.7314 1.9454 0.2860 37 1 11.9028 4.6852 1.0044 38 1 12.1944 0.9600 0.4707 39 1 14.2550 -0.3486 0.7675 40 1 16.9507 0.0526 0.5529 41 1 17.2630 -1.0141 2.6673 42 1 17.7566 2.3307 3.2928 43 1 19.3458 0.8836 2.1529 44 1 16.3769 3.1937 1.8433 45 1 14.3273 4.5228 1.5620 46 1 6.5518 3.4172 1.8031 47 1 5.4180 4.5762 0.9833 48 1 3.7922 4.6380 0.0116 49 1 1.3340 4.5113 0.0007 50 1 0.2128 2.3203 0.0002 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_12360594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:38:42 Heat of formation + Delta-G solvation = -1.675969 kcal Electronic energy + Delta-G solvation = -30079.713741 eV Core-core repulsion = 25812.098121 eV Total energy + Delta-G solvation = -4267.615620 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.166 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.67232 -40.92309 -40.51757 -39.64746 -37.95358 -37.80001 -35.17251 -34.47391 -32.19075 -32.06042 -31.47239 -30.84207 -28.25001 -27.36457 -26.68424 -25.97042 -24.15352 -23.87563 -23.54504 -22.34101 -21.96902 -20.57062 -20.13495 -18.90168 -18.60337 -18.39976 -17.50726 -17.24767 -17.07459 -16.87807 -16.67706 -16.45155 -16.33109 -16.06415 -15.73453 -15.57555 -15.22596 -15.09539 -14.77878 -14.43890 -14.33976 -14.29623 -14.09675 -13.99823 -13.84536 -13.49206 -13.40647 -13.23778 -13.18440 -13.17235 -12.67872 -12.29628 -12.27567 -12.11145 -12.01933 -11.77877 -11.65478 -11.57637 -11.32948 -11.25591 -11.07529 -10.50512 -10.10879 -9.96794 -9.75159 -9.22490 -9.15900 -4.93943 -0.54310 0.32197 0.40777 0.47176 0.88768 1.29078 1.58537 1.93797 2.14175 2.22380 2.34663 2.73229 2.78946 3.36011 3.47283 3.56870 3.70649 3.74353 3.75148 3.85235 3.87328 3.96157 3.97553 4.09277 4.16486 4.18520 4.20590 4.27324 4.33459 4.34153 4.38420 4.44450 4.53287 4.54342 4.62925 4.67277 4.70462 4.78547 4.85746 4.88866 4.96210 4.97901 5.02182 5.09287 5.10657 5.16346 5.17737 5.33694 5.39631 5.48772 5.48846 5.56172 5.61444 5.70887 5.82018 5.90694 6.43067 6.53818 6.56590 7.21485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.165 4.165 5 C -0.034 4.034 6 C -0.067 4.067 7 H 0.109 0.891 8 C -0.122 4.122 9 C 0.115 3.885 10 H 0.087 0.913 11 N -0.696 5.696 12 C 0.546 3.454 13 O -0.589 6.589 14 C -0.212 4.212 15 C -0.017 4.017 16 C -0.084 4.084 17 C -0.101 4.101 18 C -0.106 4.106 19 C -0.075 4.075 20 C -0.086 4.086 21 O -0.558 6.558 22 Si 0.758 3.242 23 C -0.127 4.127 24 C -0.095 4.095 25 C -0.141 4.141 26 C -0.161 4.161 27 C -0.084 4.084 28 C -0.222 4.222 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.417 0.583 36 H 0.160 0.840 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.395 0.605 42 H -0.301 1.301 43 H -0.286 1.286 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.066 0.934 47 H 0.099 0.901 48 H 0.139 0.861 49 H 0.143 0.857 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 -2.542 -3.705 4.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.184 4.184 5 C -0.034 4.034 6 C -0.086 4.086 7 H 0.128 0.872 8 C -0.160 4.160 9 C 0.010 3.990 10 H 0.105 0.895 11 N -0.346 5.346 12 C 0.336 3.664 13 O -0.472 6.472 14 C -0.232 4.232 15 C -0.037 4.037 16 C -0.084 4.084 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.076 4.076 20 C -0.195 4.195 21 O -0.368 6.368 22 Si 0.664 3.336 23 C -0.144 4.144 24 C -0.113 4.113 25 C -0.179 4.179 26 C -0.179 4.179 27 C -0.102 4.102 28 C -0.241 4.241 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.255 0.745 36 H 0.177 0.823 37 H 0.145 0.855 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.117 0.883 41 H 0.246 0.754 42 H -0.229 1.229 43 H -0.213 1.213 44 H 0.160 0.840 45 H 0.166 0.834 46 H 0.085 0.915 47 H 0.117 0.883 48 H 0.157 0.843 49 H 0.161 0.839 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.001 -1.469 -2.978 3.320 hybrid contribution -0.355 -1.483 0.698 1.677 sum -0.357 -2.952 -2.280 3.747 Atomic orbital electron populations 1.23293 0.76656 1.05381 1.02110 1.86039 1.23281 1.27296 1.88794 1.19294 0.92845 0.84644 0.96799 1.20503 0.91467 0.98853 1.07582 1.19619 0.95540 0.91859 0.96383 1.21612 0.89898 0.99500 0.97543 0.87244 1.23357 0.96870 0.99832 0.95966 1.21835 0.83545 0.96418 0.97250 0.89462 1.45465 1.08004 1.12330 1.68830 1.18712 0.84736 0.87054 0.75861 1.90812 1.86588 1.16881 1.52895 1.22984 0.91729 1.01595 1.06926 1.22383 0.90865 0.99700 0.90710 1.19134 0.93354 0.93801 1.02097 1.21686 0.99194 0.92867 0.98091 1.21120 0.91925 1.00662 0.98712 1.19700 0.95157 0.93682 0.99025 1.25002 1.02838 0.96500 0.95123 1.86539 1.42604 1.48582 1.59053 0.94194 0.73448 0.81741 0.84195 1.21097 0.99059 0.93338 1.00915 1.21579 0.91357 1.01135 0.97206 1.23553 0.97900 0.98778 0.97705 1.21179 0.93825 0.98779 1.04103 1.21242 0.94985 0.97561 0.96385 1.21487 1.00933 0.92416 1.09219 0.91809 0.86676 0.91911 0.85019 0.87957 0.89331 0.74544 0.82314 0.85470 0.83182 0.84708 0.88307 0.75403 1.22903 1.21346 0.84004 0.83437 0.91498 0.88268 0.84335 0.83921 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.90 10.50 -92.42 -0.97 -2.87 16 3 C 0.11 0.59 6.69 22.51 0.15 0.74 16 4 C -0.17 -0.65 9.65 22.37 0.22 -0.43 16 5 C -0.03 -0.04 5.29 -19.88 -0.11 -0.14 16 6 C -0.07 0.19 3.86 -11.01 -0.04 0.15 16 7 H 0.11 -0.54 8.09 -2.38 -0.02 -0.56 16 8 C -0.12 0.49 7.29 31.12 0.23 0.72 16 9 C 0.12 -0.06 4.32 45.52 0.20 0.14 16 10 H 0.09 0.34 7.46 -2.39 -0.02 0.32 16 11 N -0.70 0.97 5.26 -444.26 -2.34 -1.37 16 12 C 0.55 2.49 7.74 86.38 0.67 3.16 16 13 O -0.59 -8.06 15.83 -4.34 -0.07 -8.12 16 14 C -0.21 0.07 9.41 23.62 0.22 0.29 16 15 C -0.02 -0.03 9.46 23.84 0.23 0.20 16 16 C -0.08 -0.08 5.87 -20.15 -0.12 -0.20 16 17 C -0.10 0.07 9.41 22.57 0.21 0.28 16 18 C -0.11 -0.08 9.59 22.23 0.21 0.13 16 19 C -0.08 -0.10 5.43 -19.79 -0.11 -0.21 16 20 C -0.09 0.12 2.81 71.24 0.20 0.32 16 21 O -0.56 -0.80 12.74 -148.98 -1.90 -2.70 16 22 Si 0.76 -1.64 29.77 68.60 2.04 0.40 16 23 C -0.13 -0.05 8.65 22.23 0.19 0.14 16 24 C -0.09 -0.04 9.80 22.57 0.22 0.19 16 25 C -0.14 0.16 7.25 31.12 0.23 0.38 16 26 C -0.16 -0.09 8.62 22.28 0.19 0.10 16 27 C -0.08 -0.08 10.04 22.25 0.22 0.15 16 28 C -0.22 -0.58 9.04 22.36 0.20 -0.38 16 29 H 0.06 -0.24 7.66 -2.39 -0.02 -0.25 16 30 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 32 H 0.13 0.29 8.05 -2.91 -0.02 0.27 16 33 H 0.10 -0.42 7.73 -2.38 -0.02 -0.44 16 34 H 0.09 -0.51 8.14 -2.39 -0.02 -0.52 16 35 H 0.42 -3.15 8.68 -92.71 -0.80 -3.96 16 36 H 0.16 -1.11 6.07 -2.91 -0.02 -1.12 16 37 H 0.13 0.45 7.52 -2.91 -0.02 0.43 16 38 H 0.15 -0.88 6.17 -2.91 -0.02 -0.90 16 39 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 40 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 41 H 0.40 -2.55 8.74 -74.06 -0.65 -3.20 16 42 H -0.30 -1.68 7.11 99.48 0.71 -0.98 16 43 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 44 H 0.14 -0.44 4.85 -2.91 -0.01 -0.45 16 45 H 0.15 -0.48 8.06 -2.91 -0.02 -0.50 16 46 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.10 -0.16 6.29 -2.39 -0.02 -0.18 16 48 H 0.14 -0.38 6.64 -2.91 -0.02 -0.40 16 49 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 50 H 0.14 -0.14 6.30 -2.91 -0.02 -0.16 16 Total: 0.00 -23.29 412.82 0.87 -22.42 By element: Atomic # 1 Polarization: -14.13 SS G_CDS: -0.43 Total: -14.55 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 4.53 Total: 6.80 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -2.34 Total: -1.37 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -2.94 Total: -13.69 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: 2.04 Total: 0.40 kcal Total: -23.29 0.87 -22.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_12360594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.742 kcal (2) G-P(sol) polarization free energy of solvation -23.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds