Wall clock time and date at job start Sat Mar 6 2021 14:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99881 * 2 1 4 4 C 1.38712 * 120.05044 * 180.30226 * 3 2 1 5 5 C 1.38166 * 119.93590 * 180.25704 * 4 3 2 6 6 C 1.50698 * 119.97149 * 179.74355 * 5 4 3 7 7 H 1.09004 * 112.84934 * 10.91771 * 6 5 4 8 8 C 1.53783 * 113.69492 * 142.18804 * 6 5 4 9 9 C 1.53778 * 87.08254 * 139.99233 * 8 6 5 10 10 H 1.08995 * 113.69089 * 220.00338 * 9 8 6 11 11 N 1.46504 * 113.61103 * 89.11690 * 9 8 6 12 12 C 1.34778 * 119.99939 * 107.50172 * 11 9 8 13 13 O 1.21629 * 119.99937 * 359.97438 * 12 11 9 14 14 C 1.47292 * 120.00044 * 179.97438 * 12 11 9 15 15 C 1.40372 * 120.04241 * 179.97438 * 14 12 11 16 16 O 1.35675 * 120.14100 * 359.95726 * 15 14 12 17 17 C 1.38321 * 119.71854 * 180.23714 * 15 14 12 18 18 C 1.39569 * 119.81504 * 359.51567 * 17 15 14 19 19 C 1.47567 * 119.95373 * 180.23558 * 18 17 15 20 20 C 1.36102 * 125.94252 * 180.25598 * 19 18 17 21 21 C 1.40800 * 106.73404 * 179.97438 * 20 19 18 22 22 C 1.34834 * 107.05149 * 359.97438 * 21 20 19 23 23 C 1.50698 * 125.65492 * 179.97438 * 22 21 20 24 24 O 1.42897 * 109.46988 * 65.00075 * 23 22 21 25 25 Si 1.86301 * 109.47061 * 184.99622 * 23 22 21 26 26 O 1.34235 * 108.69161 * 359.77123 * 22 21 20 27 27 C 1.39956 * 120.09025 * 0.48811 * 18 17 15 28 28 C 1.36393 * 120.27735 * 359.74494 * 27 18 17 29 29 C 1.53777 * 87.08383 * 334.56846 * 9 8 6 30 30 C 1.38242 * 120.05953 * 359.46539 * 5 4 3 31 31 C 1.38289 * 120.11012 * 0.23729 * 30 5 4 32 32 C 1.38118 * 120.05842 * 0.04187 * 31 30 5 33 33 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46826 * 299.99373 * 1 2 3 35 35 H 1.08995 * 109.47344 * 59.99595 * 1 2 3 36 36 H 1.07995 * 120.03050 * 359.97438 * 4 3 2 37 37 H 1.09001 * 113.61439 * 25.43982 * 8 6 5 38 38 H 1.09007 * 113.61416 * 254.54663 * 8 6 5 39 39 H 0.96995 * 120.00310 * 287.50021 * 11 9 8 40 40 H 0.96701 * 113.99703 * 90.00425 * 16 15 14 41 41 H 1.08004 * 120.08674 * 179.74987 * 17 15 14 42 42 H 1.08001 * 126.63850 * 359.97438 * 20 19 18 43 43 H 1.08004 * 126.47283 * 179.97438 * 21 20 19 44 44 H 1.08995 * 109.47203 * 304.99469 * 23 22 21 45 45 H 0.96703 * 114.00355 * 179.97438 * 24 23 22 46 46 H 1.48493 * 110.00059 * 178.67950 * 25 23 22 47 47 H 1.48503 * 110.00188 * 300.00108 * 25 23 22 48 48 H 1.07999 * 119.86479 * 179.77157 * 27 18 17 49 49 H 1.07998 * 119.90579 * 179.97438 * 28 27 18 50 50 H 1.08994 * 113.61653 * 139.97798 * 29 9 8 51 51 H 1.08998 * 113.61520 * 270.88703 * 29 9 8 52 52 H 1.07998 * 119.94858 * 180.25278 * 30 5 4 53 53 H 1.08008 * 119.97018 * 180.02562 * 31 30 5 54 54 H 1.07994 * 120.03004 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 -0.0063 5 6 4.0559 2.5171 -0.0009 6 6 5.5607 2.5982 -0.0020 7 1 6.0363 1.6370 -0.1973 8 6 6.1171 3.7465 -0.8603 9 6 7.1530 3.9724 0.2537 10 1 7.3510 5.0240 0.4608 11 7 8.3771 3.1855 0.0849 12 6 9.5222 3.7918 -0.2862 13 8 9.5391 4.9922 -0.4814 14 6 10.7531 3.0007 -0.4553 15 6 11.9461 3.6312 -0.8423 16 8 11.9688 4.9698 -1.0624 17 6 13.0969 2.8811 -1.0039 18 6 13.0669 1.5053 -0.7715 19 6 14.2941 0.7029 -0.9379 20 6 14.4018 -0.6407 -0.7494 21 6 15.7415 -0.9815 -1.0171 22 6 16.3797 0.1577 -1.3530 23 6 17.8365 0.2727 -1.7213 24 8 18.0784 -0.4399 -2.9360 25 14 18.2780 2.0674 -1.9558 26 8 15.5014 1.1719 -1.3093 27 6 11.8731 0.8847 -0.3859 28 6 10.7350 1.6200 -0.2301 29 6 6.1389 3.3348 1.2179 30 6 3.3019 3.6757 -0.0004 31 6 1.9209 3.6047 -0.0003 32 6 1.2914 2.3753 0.0001 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 -0.3634 0.5139 -0.8899 36 1 4.0206 0.3799 -0.0109 37 1 5.4210 4.5761 -0.9840 38 1 6.5541 3.4154 -1.8024 39 1 8.3636 2.2281 0.2403 40 1 12.1789 5.4939 -0.2774 41 1 14.0171 3.3595 -1.3054 42 1 13.6125 -1.3151 -0.4520 43 1 16.1758 -1.9689 -0.9635 44 1 18.4473 -0.1505 -0.9239 45 1 18.9978 -0.4086 -3.2341 46 1 19.7195 2.1966 -2.2880 47 1 17.4520 2.6561 -3.0404 48 1 11.8531 -0.1808 -0.2106 49 1 9.8170 1.1349 0.0672 50 1 6.5934 2.6713 1.9536 51 1 5.4486 4.0518 1.6624 52 1 3.7922 4.6380 -0.0003 53 1 1.3340 4.5114 -0.0003 54 1 0.2128 2.3204 -0.0002 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_12807986.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:39:08 Heat of formation + Delta-G solvation = -34.184394 kcal Electronic energy + Delta-G solvation = -38308.601367 eV Core-core repulsion = 33145.759412 eV Total energy + Delta-G solvation = -5162.841956 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -43.73878 -41.85717 -41.23312 -40.39851 -39.22737 -38.15092 -37.92083 -37.74897 -34.76424 -34.19839 -33.29591 -32.08164 -31.35422 -30.95993 -30.40955 -28.23552 -27.22046 -26.66805 -25.95819 -24.42389 -24.03739 -23.56844 -22.67726 -22.22040 -21.97939 -21.31936 -20.32214 -19.59845 -18.92669 -18.82637 -18.56259 -18.03815 -17.32426 -17.20886 -17.10759 -16.91907 -16.66604 -16.65058 -16.48436 -16.12187 -16.06121 -15.88679 -15.74603 -15.35268 -15.27814 -14.71610 -14.46178 -14.42628 -14.28006 -14.19622 -14.10816 -13.98566 -13.95957 -13.59348 -13.51273 -13.44364 -13.24012 -13.16430 -12.86401 -12.71066 -12.66435 -12.27836 -12.16545 -12.09869 -11.90503 -11.63191 -11.56344 -11.23860 -11.13187 -10.93492 -10.77041 -10.56513 -10.10129 -9.94705 -9.73537 -9.14739 -9.00851 -5.00734 -0.79346 0.14905 0.33611 0.48635 0.62517 1.11366 1.34872 1.44584 1.69263 1.90024 1.92092 2.02276 2.35898 2.64627 2.74723 3.00726 3.24868 3.47600 3.53069 3.61784 3.64825 3.72893 3.76403 3.81142 3.88617 3.98213 3.99401 4.01042 4.10429 4.19798 4.20489 4.28587 4.31723 4.35048 4.39828 4.41413 4.55568 4.61838 4.63842 4.69128 4.70669 4.71766 4.79759 4.80407 4.86216 4.91064 4.98634 5.03892 5.06614 5.10414 5.11776 5.17044 5.22374 5.35135 5.43753 5.49345 5.53217 5.56204 5.71850 5.83296 5.98374 6.44295 6.47991 6.48990 6.71271 7.17411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.033 4.033 6 C -0.067 4.067 7 H 0.112 0.888 8 C -0.143 4.143 9 C 0.117 3.883 10 H 0.089 0.911 11 N -0.695 5.695 12 C 0.559 3.441 13 O -0.562 6.562 14 C -0.179 4.179 15 C 0.162 3.838 16 O -0.496 6.496 17 C -0.155 4.155 18 C 0.026 3.974 19 C 0.003 3.997 20 C -0.170 4.170 21 C -0.181 4.181 22 C -0.016 4.016 23 C -0.038 4.038 24 O -0.554 6.554 25 Si 0.756 3.244 26 O -0.180 6.180 27 C -0.109 4.109 28 C -0.050 4.050 29 C -0.121 4.121 30 C -0.161 4.161 31 C -0.085 4.085 32 C -0.222 4.222 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.414 0.586 40 H 0.409 0.591 41 H 0.135 0.865 42 H 0.185 0.815 43 H 0.169 0.831 44 H 0.132 0.868 45 H 0.405 0.595 46 H -0.260 1.260 47 H -0.315 1.315 48 H 0.171 0.829 49 H 0.173 0.827 50 H 0.091 0.909 51 H 0.103 0.897 52 H 0.138 0.862 53 H 0.142 0.858 54 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 -5.180 6.304 8.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.183 4.183 5 C -0.033 4.033 6 C -0.086 4.086 7 H 0.130 0.870 8 C -0.181 4.181 9 C 0.012 3.988 10 H 0.107 0.893 11 N -0.348 5.348 12 C 0.348 3.652 13 O -0.441 6.441 14 C -0.183 4.183 15 C 0.116 3.884 16 O -0.309 6.309 17 C -0.174 4.174 18 C 0.025 3.975 19 C -0.046 4.046 20 C -0.189 4.189 21 C -0.200 4.200 22 C -0.066 4.066 23 C -0.147 4.147 24 O -0.366 6.366 25 Si 0.660 3.340 26 O -0.078 6.078 27 C -0.127 4.127 28 C -0.069 4.069 29 C -0.159 4.159 30 C -0.179 4.179 31 C -0.103 4.103 32 C -0.241 4.241 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.253 0.747 40 H 0.270 0.730 41 H 0.153 0.847 42 H 0.203 0.797 43 H 0.187 0.813 44 H 0.149 0.851 45 H 0.258 0.742 46 H -0.185 1.185 47 H -0.243 1.243 48 H 0.188 0.812 49 H 0.190 0.810 50 H 0.110 0.890 51 H 0.121 0.879 52 H 0.156 0.844 53 H 0.160 0.840 54 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.861 -3.875 5.058 6.430 hybrid contribution 0.368 -0.679 -0.704 1.045 sum -0.493 -4.554 4.355 6.320 Atomic orbital electron populations 1.23288 0.76699 1.05364 1.02077 1.86040 1.23233 1.27285 1.88797 1.19303 0.92894 0.84604 0.96811 1.20511 0.91411 0.98888 1.07466 1.19614 0.95556 0.91820 0.96356 1.21630 0.89870 0.99541 0.97509 0.87005 1.23568 0.97945 0.98904 0.97728 1.21843 0.83263 0.96433 0.97288 0.89315 1.45453 1.07819 1.12288 1.69228 1.18202 0.83760 0.86911 0.76357 1.90823 1.85993 1.16100 1.51188 1.20509 0.93712 0.95744 1.08293 1.18467 0.91151 0.84626 0.94189 1.84728 1.92968 1.13856 1.39339 1.21563 0.98554 0.93882 1.03353 1.17956 0.90066 0.91290 0.98159 1.20609 0.83872 0.93194 1.06953 1.22259 0.98478 0.93758 1.04415 1.21842 0.94097 0.99594 1.04466 1.21860 0.92338 0.86417 1.06009 1.23952 0.89900 1.10156 0.90684 1.86519 1.35633 1.73751 1.40720 0.93812 0.77541 0.74742 0.87891 1.83916 1.18137 1.37427 1.68310 1.21055 0.89707 1.02250 0.99680 1.21174 0.99911 0.90639 0.95128 1.23362 0.96710 0.99859 0.95940 1.21175 0.93799 0.98822 1.04106 1.21234 0.95025 0.97534 0.96468 1.21481 1.00906 0.92452 1.09255 0.86675 0.91822 0.91979 0.84823 0.88335 0.91655 0.74692 0.73029 0.84670 0.79743 0.81307 0.85061 0.74204 1.18487 1.24343 0.81195 0.80961 0.89006 0.87902 0.84392 0.84049 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.71 10.50 -92.45 -0.97 -2.68 16 3 C 0.11 0.52 6.69 22.51 0.15 0.67 16 4 C -0.16 -0.50 9.65 22.37 0.22 -0.29 16 5 C -0.03 -0.01 5.29 -19.88 -0.11 -0.11 16 6 C -0.07 0.26 3.85 -11.01 -0.04 0.22 16 7 H 0.11 -0.73 8.09 -2.38 -0.02 -0.75 16 8 C -0.14 0.22 7.25 31.12 0.23 0.44 16 9 C 0.12 -0.15 4.32 45.51 0.20 0.04 16 10 H 0.09 0.27 7.46 -2.39 -0.02 0.25 16 11 N -0.70 1.36 5.21 -443.43 -2.31 -0.95 16 12 C 0.56 3.01 7.75 86.62 0.67 3.68 16 13 O -0.56 -7.87 14.74 16.88 0.25 -7.62 16 14 C -0.18 -0.47 5.89 -19.97 -0.12 -0.59 16 15 C 0.16 0.97 6.71 22.81 0.15 1.12 16 16 O -0.50 -4.18 11.56 -68.92 -0.80 -4.97 16 17 C -0.15 -0.73 9.65 22.61 0.22 -0.51 16 18 C 0.03 0.05 5.87 -20.08 -0.12 -0.07 16 19 C 0.00 0.01 7.02 24.24 0.17 0.18 16 20 C -0.17 0.01 10.25 22.40 0.23 0.23 16 21 C -0.18 -0.28 10.78 22.11 0.24 -0.04 16 22 C -0.02 -0.06 6.24 24.90 0.16 0.10 16 23 C -0.04 0.04 2.98 71.24 0.21 0.25 16 24 O -0.55 -0.52 12.86 -148.98 -1.92 -2.43 16 25 Si 0.76 -0.15 32.11 68.60 2.20 2.06 16 26 O -0.18 -1.13 8.79 -6.10 -0.05 -1.18 16 27 C -0.11 0.46 9.48 22.26 0.21 0.67 16 28 C -0.05 0.24 9.47 22.24 0.21 0.45 16 29 C -0.12 0.64 7.29 31.12 0.23 0.87 16 30 C -0.16 -0.02 8.61 22.28 0.19 0.17 16 31 C -0.08 -0.06 10.04 22.25 0.22 0.17 16 32 C -0.22 -0.51 9.04 22.37 0.20 -0.30 16 33 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.06 -0.26 7.66 -2.39 -0.02 -0.27 16 35 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 36 H 0.13 0.13 8.05 -2.91 -0.02 0.11 16 37 H 0.10 -0.18 6.32 -2.39 -0.02 -0.19 16 38 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 39 H 0.41 -3.59 6.71 -92.71 -0.62 -4.21 16 40 H 0.41 0.34 9.06 -74.06 -0.67 -0.33 16 41 H 0.14 0.70 7.90 -2.91 -0.02 0.67 16 42 H 0.19 -1.27 7.24 -2.91 -0.02 -1.29 16 43 H 0.17 -0.35 8.06 -2.91 -0.02 -0.38 16 44 H 0.13 -1.03 7.96 -2.39 -0.02 -1.05 16 45 H 0.41 -3.33 8.74 -74.06 -0.65 -3.98 16 46 H -0.26 -0.26 7.11 99.48 0.71 0.44 16 47 H -0.32 -3.36 7.11 99.48 0.71 -2.66 16 48 H 0.17 -1.81 6.95 -2.91 -0.02 -1.83 16 49 H 0.17 -2.21 6.38 -2.91 -0.02 -2.22 16 50 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 51 H 0.10 -0.54 7.72 -2.39 -0.02 -0.56 16 52 H 0.14 -0.43 6.66 -2.91 -0.02 -0.45 16 53 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 54 H 0.14 -0.17 6.30 -2.91 -0.02 -0.19 16 Total: 0.00 -30.67 451.33 0.34 -30.33 By element: Atomic # 1 Polarization: -20.08 SS G_CDS: -0.90 Total: -20.98 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.83 Total: 8.42 kcal Atomic # 7 Polarization: 1.36 SS G_CDS: -2.31 Total: -0.95 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -3.49 Total: -18.88 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: 2.20 Total: 2.06 kcal Total: -30.67 0.34 -30.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_12807986.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.852 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds