Wall clock time and date at job start Sat Mar 6 2021 14:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99897 * 2 1 4 4 C 1.38712 * 120.05545 * 180.02562 * 3 2 1 5 5 C 1.38159 * 119.94545 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.97589 * 179.97438 * 5 4 3 7 7 H 1.09006 * 112.84997 * 348.80843 * 6 5 4 8 8 C 1.53786 * 113.61314 * 120.00054 * 6 5 4 9 9 C 1.53787 * 87.07742 * 139.98640 * 8 6 5 10 10 H 1.08999 * 113.61168 * 219.93765 * 9 8 6 11 11 N 1.46495 * 113.61410 * 89.11814 * 9 8 6 12 12 C 1.34783 * 119.99969 * 156.52651 * 11 9 8 13 13 O 1.21586 * 119.99880 * 0.02562 * 12 11 9 14 14 C 1.47567 * 119.99991 * 180.02562 * 12 11 9 15 15 C 1.40205 * 120.12003 * 180.02562 * 14 12 11 16 16 O 1.35653 * 120.00547 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99768 * 179.97438 * 15 14 12 18 18 C 1.37775 * 120.24112 * 0.02562 * 17 15 14 19 19 C 1.39843 * 120.24252 * 0.02562 * 18 17 15 20 20 C 1.47818 * 119.99568 * 179.97438 * 19 18 17 21 21 C 1.35935 * 125.93162 * 359.97438 * 20 19 18 22 22 C 1.40970 * 106.74463 * 180.02562 * 21 20 19 23 23 C 1.34704 * 107.02728 * 359.97438 * 22 21 20 24 24 C 1.50707 * 125.66734 * 180.02562 * 23 22 21 25 25 O 1.42893 * 109.47026 * 64.99311 * 24 23 22 26 26 Si 1.86299 * 109.47121 * 185.00008 * 24 23 22 27 27 O 1.34350 * 108.67087 * 359.73638 * 23 22 21 28 28 C 1.39169 * 120.00599 * 359.95276 * 19 18 17 29 29 C 1.53779 * 87.17669 * 334.52726 * 9 8 6 30 30 C 1.38243 * 120.05614 * 0.27528 * 5 4 3 31 31 C 1.38290 * 120.10876 * 359.44983 * 30 5 4 32 32 C 1.38127 * 120.05501 * 0.54588 * 31 30 5 33 33 H 1.09003 * 109.46825 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.46889 * 299.99513 * 1 2 3 35 35 H 1.08998 * 109.47312 * 59.99840 * 1 2 3 36 36 H 1.08010 * 120.02669 * 359.95446 * 4 3 2 37 37 H 1.08992 * 113.61304 * 25.43995 * 8 6 5 38 38 H 1.08995 * 113.69010 * 254.54468 * 8 6 5 39 39 H 0.97003 * 120.00497 * 336.52960 * 11 9 8 40 40 H 0.96701 * 113.99753 * 269.95928 * 16 15 14 41 41 H 1.08003 * 119.88201 * 180.29808 * 17 15 14 42 42 H 1.08006 * 119.87556 * 180.02562 * 18 17 15 43 43 H 1.08002 * 126.63225 * 359.96124 * 21 20 19 44 44 H 1.07998 * 126.48603 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.46523 * 304.99591 * 24 23 22 46 46 H 0.96706 * 113.99622 * 60.00752 * 25 24 23 47 47 H 1.48495 * 110.00082 * 58.67797 * 26 24 23 48 48 H 1.48496 * 109.99713 * 179.97438 * 26 24 23 49 49 H 1.07993 * 120.12458 * 180.02562 * 28 19 18 50 50 H 1.08991 * 113.61761 * 140.02038 * 29 9 8 51 51 H 1.09001 * 113.61485 * 270.93093 * 29 9 8 52 52 H 1.08003 * 119.94999 * 179.70039 * 30 5 4 53 53 H 1.08004 * 119.97436 * 180.29317 * 31 30 5 54 54 H 1.08001 * 120.02605 * 179.70175 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4311 1.2849 -0.0005 5 6 4.0559 2.5171 -0.0011 6 6 5.5607 2.5982 -0.0011 7 1 6.0364 1.6371 0.1943 8 6 6.1379 3.3344 -1.2217 9 6 7.1513 3.9740 -0.2579 10 1 7.3481 5.0257 -0.4661 11 7 8.3764 3.1887 -0.0885 12 6 9.5134 3.7917 0.3118 13 8 9.5222 4.9872 0.5328 14 6 10.7476 3.0008 0.4819 15 6 11.9316 3.6253 0.8988 16 8 11.9441 4.9588 1.1471 17 6 13.0910 2.8787 1.0584 18 6 13.0839 1.5239 0.8081 19 6 11.9088 0.8909 0.3909 20 6 11.9075 -0.5629 0.1233 21 6 12.9742 -1.3969 0.2427 22 6 12.5239 -2.6853 -0.1099 23 6 11.2184 -2.5749 -0.4230 24 6 10.3210 -3.7041 -0.8599 25 8 10.1759 -4.6388 0.2112 26 14 8.6490 -3.0250 -1.3225 27 8 10.8476 -1.2921 -0.2751 28 6 10.7405 1.6294 0.2279 29 6 6.1169 3.7500 0.8577 30 6 3.3019 3.6757 0.0047 31 6 1.9208 3.6047 -0.0005 32 6 1.2914 2.3752 -0.0001 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5137 0.8900 35 1 -0.3634 0.5138 -0.8899 36 1 4.0207 0.3799 -0.0002 37 1 5.4469 4.0502 -1.6668 38 1 6.5934 2.6719 -1.9576 39 1 8.3693 2.2348 -0.2646 40 1 12.1633 5.5003 0.3765 41 1 14.0008 3.3608 1.3843 42 1 13.9892 0.9487 0.9347 43 1 13.9740 -1.1249 0.5476 44 1 13.1137 -3.5899 -0.1252 45 1 10.7610 -4.2050 -1.7222 46 1 9.7894 -4.2611 1.0131 47 1 8.7900 -2.0280 -2.4139 48 1 7.7548 -4.1286 -1.7557 49 1 9.8319 1.1425 -0.0938 50 1 6.5551 3.4216 1.8000 51 1 5.4200 4.5792 0.9799 52 1 3.7921 4.6381 0.0091 53 1 1.3339 4.5114 -0.0008 54 1 0.2128 2.3203 0.0007 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13259648.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:39:31 Heat of formation + Delta-G solvation = -36.044520 kcal Electronic energy + Delta-G solvation = -39630.432528 eV Core-core repulsion = 34467.509911 eV Total energy + Delta-G solvation = -5162.922617 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.68920 -41.85490 -41.22097 -40.38598 -39.22333 -38.11497 -37.84408 -37.70981 -34.71501 -34.13260 -32.76841 -32.50104 -31.86739 -30.82091 -30.01798 -28.22714 -26.68966 -26.40028 -26.34677 -25.07634 -23.63289 -23.52133 -22.98868 -22.32398 -21.84101 -21.20973 -20.32980 -19.55020 -19.14975 -18.75120 -18.26324 -17.67043 -17.45260 -17.22227 -17.05309 -16.91930 -16.69012 -16.65344 -16.38715 -16.32130 -16.00263 -15.75235 -15.64508 -15.42141 -15.27294 -14.63624 -14.47475 -14.41813 -14.33467 -14.24729 -13.96828 -13.94974 -13.86946 -13.56849 -13.46071 -13.24095 -13.21364 -13.13861 -13.10473 -12.75860 -12.66355 -12.28174 -12.21883 -12.09840 -11.88458 -11.62922 -11.57126 -11.24539 -11.05136 -10.91814 -10.64848 -10.46016 -10.30644 -10.04868 -9.72948 -9.13878 -8.89710 -5.03194 -0.55009 -0.19833 0.34266 0.49510 0.78161 1.16640 1.44227 1.50556 1.76186 1.87188 1.91240 1.99723 2.36668 2.63623 2.75297 3.12425 3.25045 3.39955 3.45151 3.52008 3.65895 3.72354 3.74742 3.89215 3.91119 3.96931 4.02308 4.07193 4.10758 4.20124 4.21922 4.29243 4.32343 4.35565 4.40206 4.41183 4.56240 4.62667 4.63639 4.66629 4.70423 4.72117 4.79050 4.79943 4.85355 4.89591 4.98065 5.02762 5.03436 5.11653 5.14012 5.16996 5.22021 5.35917 5.44756 5.49469 5.51854 5.54473 5.71829 5.83939 5.99857 6.42497 6.45255 6.62125 6.73962 7.12869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.033 4.033 6 C -0.068 4.068 7 H 0.112 0.888 8 C -0.124 4.124 9 C 0.117 3.883 10 H 0.090 0.910 11 N -0.699 5.699 12 C 0.560 3.440 13 O -0.557 6.557 14 C -0.179 4.179 15 C 0.165 3.835 16 O -0.495 6.495 17 C -0.147 4.147 18 C -0.045 4.045 19 C -0.041 4.041 20 C 0.024 3.976 21 C -0.191 4.191 22 C -0.184 4.184 23 C -0.056 4.056 24 C -0.028 4.028 25 O -0.543 6.543 26 Si 0.773 3.227 27 O -0.170 6.170 28 C -0.050 4.050 29 C -0.140 4.140 30 C -0.161 4.161 31 C -0.085 4.085 32 C -0.222 4.222 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.411 0.589 40 H 0.411 0.589 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.174 0.826 44 H 0.160 0.840 45 H 0.135 0.865 46 H 0.399 0.601 47 H -0.285 1.285 48 H -0.283 1.283 49 H 0.151 0.849 50 H 0.066 0.934 51 H 0.100 0.900 52 H 0.138 0.862 53 H 0.142 0.858 54 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 -1.889 -0.729 2.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.183 4.183 5 C -0.034 4.034 6 C -0.087 4.087 7 H 0.130 0.870 8 C -0.161 4.161 9 C 0.012 3.988 10 H 0.108 0.892 11 N -0.352 5.352 12 C 0.349 3.651 13 O -0.436 6.436 14 C -0.183 4.183 15 C 0.118 3.882 16 O -0.308 6.308 17 C -0.165 4.165 18 C -0.063 4.063 19 C -0.042 4.042 20 C -0.025 4.025 21 C -0.210 4.210 22 C -0.203 4.203 23 C -0.105 4.105 24 C -0.139 4.139 25 O -0.351 6.351 26 Si 0.677 3.323 27 O -0.068 6.068 28 C -0.069 4.069 29 C -0.179 4.179 30 C -0.179 4.179 31 C -0.103 4.103 32 C -0.241 4.241 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.249 0.751 40 H 0.271 0.729 41 H 0.181 0.819 42 H 0.182 0.818 43 H 0.191 0.809 44 H 0.178 0.822 45 H 0.152 0.848 46 H 0.250 0.750 47 H -0.212 1.212 48 H -0.210 1.210 49 H 0.168 0.832 50 H 0.085 0.915 51 H 0.119 0.881 52 H 0.156 0.844 53 H 0.160 0.840 54 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.139 -1.581 -1.133 2.254 hybrid contribution 0.425 -0.384 -0.621 0.845 sum -0.713 -1.964 -1.754 2.728 Atomic orbital electron populations 1.23281 0.76751 1.05339 1.02045 1.86040 1.23172 1.27242 1.88783 1.19292 0.92875 0.84611 0.96787 1.20528 0.91440 0.98935 1.07387 1.19596 0.95434 0.91889 0.96433 1.21684 0.90002 0.99601 0.97364 0.87024 1.23370 0.96871 0.99915 0.95987 1.21858 0.83179 0.96371 0.97400 0.89163 1.45532 1.08566 1.12659 1.68412 1.18234 0.83633 0.86852 0.76430 1.90809 1.85703 1.16039 1.51056 1.20246 0.94670 0.94652 1.08719 1.18887 0.91459 0.85015 0.92840 1.84708 1.92730 1.13721 1.39673 1.21575 0.98386 0.94145 1.02427 1.21419 0.97546 0.93872 0.93467 1.17687 0.94939 0.87366 1.04185 1.20432 0.85861 0.91247 1.04979 1.22149 1.00635 0.92176 1.05992 1.21792 0.94682 0.99372 1.04426 1.23100 0.96574 0.83436 1.07432 1.24484 1.07698 0.88073 0.93600 1.86534 1.86119 1.36324 1.26100 0.93429 0.75070 0.78234 0.85566 1.83895 1.36709 1.18730 1.67462 1.21416 0.98640 0.91444 0.95400 1.23596 0.97812 0.98817 0.97652 1.21172 0.93795 0.98800 1.04105 1.21232 0.95005 0.97537 0.96496 1.21481 1.00895 0.92465 1.09246 0.86698 0.91938 0.91922 0.84668 0.87743 0.89479 0.75081 0.72870 0.81900 0.81809 0.80869 0.82223 0.84806 0.75037 1.21152 1.20972 0.83181 0.91487 0.88140 0.84384 0.84048 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.65 10.50 -92.43 -0.97 -2.62 16 3 C 0.11 0.52 6.69 22.50 0.15 0.67 16 4 C -0.16 -0.51 9.65 22.36 0.22 -0.29 16 5 C -0.03 -0.02 5.29 -19.88 -0.11 -0.12 16 6 C -0.07 0.22 3.87 -10.92 -0.04 0.18 16 7 H 0.11 -0.63 8.09 -2.38 -0.02 -0.65 16 8 C -0.12 0.53 7.29 31.12 0.23 0.75 16 9 C 0.12 -0.08 4.29 45.52 0.20 0.11 16 10 H 0.09 0.28 7.50 -2.39 -0.02 0.26 16 11 N -0.70 0.35 5.21 -443.16 -2.31 -1.96 16 12 C 0.56 3.18 7.76 86.70 0.67 3.85 16 13 O -0.56 -7.38 14.76 17.00 0.25 -7.13 16 14 C -0.18 -0.47 5.88 -20.04 -0.12 -0.59 16 15 C 0.16 0.43 6.72 22.89 0.15 0.59 16 16 O -0.49 -2.44 11.55 -68.70 -0.79 -3.23 16 17 C -0.15 0.36 9.96 22.30 0.22 0.58 16 18 C -0.05 0.18 9.54 22.55 0.22 0.40 16 19 C -0.04 0.06 5.87 -20.13 -0.12 -0.06 16 20 C 0.02 0.00 7.03 24.27 0.17 0.17 16 21 C -0.19 0.27 10.26 22.40 0.23 0.50 16 22 C -0.18 0.02 10.78 22.13 0.24 0.26 16 23 C -0.06 0.02 6.20 24.88 0.15 0.17 16 24 C -0.03 0.07 2.98 71.24 0.21 0.28 16 25 O -0.54 1.17 12.88 -148.98 -1.92 -0.75 16 26 Si 0.77 -2.29 32.11 68.60 2.20 -0.08 16 27 O -0.17 -0.03 8.80 -6.61 -0.06 -0.09 16 28 C -0.05 0.06 9.20 22.79 0.21 0.27 16 29 C -0.14 0.19 7.27 31.21 0.23 0.42 16 30 C -0.16 -0.02 8.62 22.28 0.19 0.17 16 31 C -0.08 -0.05 10.04 22.26 0.22 0.17 16 32 C -0.22 -0.50 9.04 22.36 0.20 -0.29 16 33 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 35 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 36 H 0.14 0.11 8.05 -2.91 -0.02 0.09 16 37 H 0.10 -0.48 7.73 -2.39 -0.02 -0.50 16 38 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.41 -2.32 6.73 -92.71 -0.62 -2.95 16 40 H 0.41 -0.92 9.06 -74.06 -0.67 -1.59 16 41 H 0.16 -1.05 8.06 -2.91 -0.02 -1.07 16 42 H 0.16 -1.53 6.96 -2.91 -0.02 -1.55 16 43 H 0.17 -1.10 7.25 -2.91 -0.02 -1.12 16 44 H 0.16 -0.32 8.06 -2.91 -0.02 -0.34 16 45 H 0.13 -0.39 7.96 -2.39 -0.02 -0.41 16 46 H 0.40 -3.88 8.70 -74.05 -0.64 -4.52 16 47 H -0.29 -0.75 7.11 99.48 0.71 -0.05 16 48 H -0.28 -0.90 7.11 99.48 0.71 -0.19 16 49 H 0.15 -0.80 6.24 -2.91 -0.02 -0.82 16 50 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 51 H 0.10 -0.20 6.30 -2.39 -0.02 -0.22 16 52 H 0.14 -0.43 6.64 -2.91 -0.02 -0.45 16 53 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 54 H 0.14 -0.17 6.30 -2.91 -0.02 -0.19 16 Total: 0.00 -25.40 451.49 0.34 -25.05 By element: Atomic # 1 Polarization: -17.55 SS G_CDS: -0.90 Total: -18.45 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 4.84 Total: 9.25 kcal Atomic # 7 Polarization: 0.35 SS G_CDS: -2.31 Total: -1.96 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -3.49 Total: -13.82 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.20 Total: -0.08 kcal Total: -25.40 0.34 -25.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13259648.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.992 kcal (2) G-P(sol) polarization free energy of solvation -25.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds