Wall clock time and date at job start Sat Mar 6 2021 14:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38707 * 120.05613 * 179.72945 * 3 2 1 5 5 C 1.38171 * 119.93979 * 179.76882 * 4 3 2 6 6 C 1.50702 * 119.96847 * 180.22690 * 5 4 3 7 7 H 1.09003 * 112.84704 * 11.45494 * 6 5 4 8 8 C 1.53784 * 113.61234 * 142.75297 * 6 5 4 9 9 C 1.53779 * 87.07923 * 139.98125 * 8 6 5 10 10 H 1.08994 * 113.62070 * 220.02076 * 9 8 6 11 11 N 1.46506 * 113.68628 * 89.12921 * 9 8 6 12 12 C 1.34780 * 120.00018 * 107.46834 * 11 9 8 13 13 O 1.21516 * 119.99804 * 359.97438 * 12 11 9 14 14 C 1.48166 * 120.00084 * 179.97438 * 12 11 9 15 15 N 1.32711 * 119.72415 * 359.97438 * 14 12 11 16 16 C 1.31526 * 121.64510 * 180.02562 * 15 14 12 17 17 C 1.38557 * 120.90127 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.32575 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.47084 * 245.00083 * 18 17 16 20 20 Si 1.86306 * 109.46756 * 4.99723 * 18 17 16 21 21 C 1.38633 * 119.35117 * 359.97438 * 17 16 15 22 22 C 1.38589 * 118.48965 * 359.72926 * 21 17 16 23 23 C 1.53779 * 113.61826 * 240.25486 * 6 5 4 24 24 C 1.38236 * 120.05797 * 0.48328 * 5 4 3 25 25 C 1.38285 * 120.11138 * 359.77034 * 24 5 4 26 26 C 1.38122 * 120.05743 * 359.97438 * 25 24 5 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 30 30 H 1.07994 * 120.02905 * 359.97438 * 4 3 2 31 31 H 1.08990 * 113.61923 * 254.53134 * 8 6 5 32 32 H 1.09005 * 113.61208 * 25.43970 * 8 6 5 33 33 H 0.96995 * 120.00174 * 287.46158 * 11 9 8 34 34 H 1.08001 * 119.54811 * 179.97438 * 16 15 14 35 35 H 1.08991 * 109.47270 * 124.99647 * 18 17 16 36 36 H 0.96698 * 113.99750 * 59.99959 * 19 18 17 37 37 H 1.48498 * 109.99884 * 179.97438 * 20 18 17 38 38 H 1.48502 * 110.00185 * 301.32018 * 20 18 17 39 39 H 1.08001 * 120.74908 * 179.97438 * 21 17 16 40 40 H 1.07994 * 120.47110 * 180.28931 * 22 21 17 41 41 H 1.09005 * 113.60933 * 334.56989 * 23 6 5 42 42 H 1.08997 * 113.61574 * 105.47150 * 23 6 5 43 43 H 1.07995 * 119.94519 * 179.74365 * 24 5 4 44 44 H 1.08002 * 119.97132 * 179.97438 * 25 24 5 45 45 H 1.08005 * 120.03124 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4312 1.2847 0.0057 5 6 4.0560 2.5170 0.0008 6 6 5.5609 2.5980 0.0018 7 1 6.0366 1.6368 -0.1931 8 6 6.1164 3.7475 -0.8556 9 6 7.1513 3.9739 0.2591 10 1 7.3470 5.0259 0.4662 11 7 8.3774 3.1894 0.0921 12 6 9.5217 3.7979 -0.2777 13 8 9.5363 4.9972 -0.4732 14 6 10.7617 3.0046 -0.4460 15 7 10.7396 1.6953 -0.2306 16 6 11.8179 0.9550 -0.3684 17 6 13.0255 1.5199 -0.7458 18 6 14.2532 0.6595 -0.8991 19 8 15.2235 1.0351 0.0804 20 14 13.7912 -1.1296 -0.6614 21 6 13.0933 2.8845 -0.9809 22 6 11.9399 3.6387 -0.8341 23 6 6.1374 3.3345 1.2224 24 6 3.3021 3.6757 0.0004 25 6 1.9210 3.6047 0.0001 26 6 1.2915 2.3753 -0.0004 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 4.0206 0.3799 0.0105 31 1 6.5544 3.4174 -1.7975 32 1 5.4194 4.5764 -0.9791 33 1 8.3656 2.2321 0.2479 34 1 11.7616 -0.1077 -0.1840 35 1 14.6713 0.7974 -1.8962 36 1 14.9190 0.9378 0.9931 37 1 14.9932 -1.9887 -0.8108 38 1 13.1905 -1.3249 0.6826 39 1 14.0229 3.3485 -1.2757 40 1 11.9553 4.7035 -1.0137 41 1 5.4461 4.0505 1.6670 42 1 6.5923 2.6711 1.9580 43 1 3.7924 4.6379 0.0008 44 1 1.3342 4.5114 0.0002 45 1 0.2129 2.3203 -0.0011 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13287726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:39:40 Heat of formation + Delta-G solvation = -5.191783 kcal Electronic energy + Delta-G solvation = -27921.959062 eV Core-core repulsion = 23872.528834 eV Total energy + Delta-G solvation = -4049.430228 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.02274 -41.42672 -40.66115 -39.56755 -38.03845 -37.84133 -34.77504 -33.63277 -32.97738 -32.06852 -30.92427 -28.25627 -27.96533 -26.69477 -25.99118 -25.03842 -23.97335 -23.54002 -22.40170 -21.97553 -20.29465 -19.34319 -18.78347 -18.59628 -17.76077 -17.23014 -17.00435 -16.80898 -16.66574 -16.61566 -16.48228 -16.24211 -16.09214 -15.75841 -15.48617 -15.02683 -14.59090 -14.47835 -14.38887 -14.31612 -14.19293 -13.97771 -13.48850 -13.48000 -13.25435 -13.19077 -12.66869 -12.63206 -12.30554 -12.13747 -12.11058 -11.66941 -11.58463 -11.44206 -11.26414 -11.07764 -10.68967 -10.66746 -10.40102 -10.09130 -9.73976 -9.14690 -4.91921 -0.60888 0.07891 0.33437 0.48734 1.24599 1.51601 1.59368 1.90493 1.96981 2.35949 2.64621 2.74647 2.92706 3.34037 3.45379 3.50103 3.63722 3.69329 3.74257 3.78674 3.88481 3.92500 3.96004 4.09928 4.12620 4.19566 4.28581 4.35307 4.39645 4.47841 4.55042 4.60032 4.62301 4.63997 4.71419 4.78341 4.81232 4.90712 4.97109 4.99509 5.01931 5.10342 5.14036 5.35123 5.37749 5.47578 5.52357 5.70405 5.83590 6.26059 6.42362 6.44547 6.60666 7.02538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.166 4.166 5 C -0.033 4.033 6 C -0.068 4.068 7 H 0.106 0.894 8 C -0.138 4.138 9 C 0.112 3.888 10 H 0.095 0.905 11 N -0.683 5.683 12 C 0.572 3.428 13 O -0.565 6.565 14 C 0.064 3.936 15 N -0.460 5.460 16 C 0.099 3.901 17 C -0.139 4.139 18 C -0.078 4.078 19 O -0.544 6.544 20 Si 0.765 3.235 21 C -0.052 4.052 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.160 4.160 25 C -0.083 4.083 26 C -0.222 4.222 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.419 0.581 34 H 0.185 0.815 35 H 0.137 0.863 36 H 0.388 0.612 37 H -0.300 1.300 38 H -0.274 1.274 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -2.798 -0.517 3.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.185 4.185 5 C -0.034 4.034 6 C -0.087 4.087 7 H 0.124 0.876 8 C -0.176 4.176 9 C 0.007 3.993 10 H 0.113 0.887 11 N -0.333 5.333 12 C 0.357 3.643 13 O -0.443 6.443 14 C -0.074 4.074 15 N -0.171 5.171 16 C -0.060 4.060 17 C -0.141 4.141 18 C -0.187 4.187 19 O -0.352 6.352 20 Si 0.669 3.331 21 C -0.078 4.078 22 C -0.136 4.136 23 C -0.161 4.161 24 C -0.178 4.178 25 C -0.101 4.101 26 C -0.240 4.240 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.257 0.743 34 H 0.202 0.798 35 H 0.155 0.845 36 H 0.238 0.762 37 H -0.228 1.228 38 H -0.200 1.200 39 H 0.180 0.820 40 H 0.167 0.833 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.437 -3.093 -0.448 3.963 hybrid contribution 0.818 0.614 0.766 1.278 sum -1.619 -2.478 0.317 2.978 Atomic orbital electron populations 1.23293 0.76660 1.05372 1.02104 1.86041 1.23273 1.27308 1.88794 1.19284 0.92790 0.84670 0.96800 1.20505 0.91515 0.98865 1.07617 1.19597 0.95380 0.91927 0.96456 1.21602 0.90043 0.99477 0.97539 0.87627 1.23546 0.97680 0.98828 0.97544 1.21966 0.83124 0.96517 0.97711 0.88699 1.45477 1.07671 1.12817 1.67347 1.18085 0.83415 0.86266 0.76487 1.90789 1.85808 1.15408 1.52304 1.21068 0.94148 0.90848 1.01297 1.67512 1.31547 1.05087 1.12942 1.23049 0.87202 1.00658 0.95125 1.21676 0.97237 0.95904 0.99324 1.25206 0.88325 1.08460 0.96724 1.86619 1.40917 1.88170 1.19489 0.94062 0.82099 0.71930 0.84981 1.21753 0.98735 0.93029 0.94255 1.22288 0.92070 1.02611 0.96644 1.23375 0.96838 0.99883 0.95971 1.21175 0.93807 0.98750 1.04042 1.21247 0.94977 0.97560 0.96346 1.21491 1.00924 0.92410 1.09195 0.86688 0.91884 0.91835 0.85151 0.91390 0.87697 0.74257 0.79846 0.84528 0.76231 1.22770 1.19982 0.82046 0.83297 0.87443 0.89727 0.84141 0.83834 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.93 10.50 -92.43 -0.97 -2.90 16 3 C 0.11 0.60 6.69 22.51 0.15 0.75 16 4 C -0.17 -0.72 9.65 22.37 0.22 -0.50 16 5 C -0.03 -0.04 5.29 -19.88 -0.11 -0.15 16 6 C -0.07 0.14 3.86 -11.01 -0.04 0.10 16 7 H 0.11 -0.32 8.09 -2.39 -0.02 -0.34 16 8 C -0.14 0.15 7.25 31.12 0.23 0.37 16 9 C 0.11 0.01 4.32 45.52 0.20 0.21 16 10 H 0.09 0.30 7.46 -2.39 -0.02 0.28 16 11 N -0.68 -1.07 5.26 -442.59 -2.33 -3.39 16 12 C 0.57 3.83 7.81 86.88 0.68 4.51 16 13 O -0.56 -7.39 15.92 -3.77 -0.06 -7.45 16 14 C 0.06 0.26 6.75 41.91 0.28 0.54 16 15 N -0.46 -0.62 9.54 -184.92 -1.76 -2.39 16 16 C 0.10 -0.26 9.84 84.81 0.83 0.57 16 17 C -0.14 0.48 5.37 -19.69 -0.11 0.37 16 18 C -0.08 0.41 2.82 71.24 0.20 0.61 16 19 O -0.54 0.94 12.84 -148.98 -1.91 -0.97 16 20 Si 0.76 -4.66 29.91 68.60 2.05 -2.61 16 21 C -0.05 0.10 9.83 22.45 0.22 0.32 16 22 C -0.12 -0.23 9.63 22.61 0.22 -0.02 16 23 C -0.12 0.39 7.29 31.12 0.23 0.62 16 24 C -0.16 -0.05 8.61 22.28 0.19 0.15 16 25 C -0.08 -0.05 10.04 22.25 0.22 0.17 16 26 C -0.22 -0.55 9.04 22.37 0.20 -0.35 16 27 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.06 -0.23 7.66 -2.39 -0.02 -0.24 16 29 H 0.06 -0.23 7.66 -2.38 -0.02 -0.25 16 30 H 0.13 0.38 8.05 -2.91 -0.02 0.36 16 31 H 0.07 0.06 8.14 -2.39 -0.02 0.05 16 32 H 0.10 -0.26 6.31 -2.38 -0.02 -0.27 16 33 H 0.42 -0.61 8.03 -92.71 -0.74 -1.35 16 34 H 0.19 -1.39 4.86 -2.91 -0.01 -1.40 16 35 H 0.14 -1.02 7.96 -2.39 -0.02 -1.04 16 36 H 0.39 -2.75 8.70 -74.06 -0.64 -3.39 16 37 H -0.30 -0.68 7.11 99.48 0.71 0.03 16 38 H -0.27 0.79 7.01 99.48 0.70 1.49 16 39 H 0.16 -0.81 8.06 -2.91 -0.02 -0.83 16 40 H 0.15 0.33 7.64 -2.91 -0.02 0.31 16 41 H 0.11 -0.45 7.72 -2.38 -0.02 -0.47 16 42 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.14 -0.48 6.65 -2.91 -0.02 -0.50 16 44 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 45 H 0.14 -0.17 6.30 -2.91 -0.02 -0.19 16 Total: 0.00 -19.32 375.63 -0.37 -19.69 By element: Atomic # 1 Polarization: -9.00 SS G_CDS: -0.31 Total: -9.31 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 4.93 Total: 9.34 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -4.09 Total: -5.78 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -2.94 Total: -11.32 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: 2.05 Total: -2.61 kcal Total: -19.32 -0.37 -19.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13287726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.494 kcal (2) G-P(sol) polarization free energy of solvation -19.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds