Wall clock time and date at job start Sat Mar 6 2021 14:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35906 * 116.99384 * 2 1 4 4 C 1.38701 * 120.05871 * 0.02562 * 3 2 1 5 5 C 1.38171 * 119.94682 * 179.97438 * 4 3 2 6 6 C 1.38244 * 120.05365 * 359.97186 * 5 4 3 7 7 C 1.38299 * 120.11074 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.97225 * 179.97438 * 7 6 5 9 9 H 1.08995 * 112.85195 * 168.80562 * 8 7 6 10 10 C 1.53785 * 113.61331 * 300.00319 * 8 7 6 11 11 C 1.53781 * 87.08277 * 140.06613 * 10 8 7 12 12 H 1.09002 * 113.61228 * 220.01683 * 11 10 8 13 13 N 1.46500 * 113.61711 * 89.19510 * 11 10 8 14 14 C 1.34778 * 119.99919 * 156.52821 * 13 11 10 15 15 O 1.21624 * 120.00204 * 0.02562 * 14 13 11 16 16 C 1.47266 * 119.99961 * 180.02562 * 14 13 11 17 17 C 1.36768 * 126.94177 * 359.68688 * 16 14 13 18 18 N 1.34660 * 108.39673 * 179.83927 * 17 16 14 19 19 C 1.46502 * 124.85112 * 180.19554 * 18 17 16 20 20 C 1.36443 * 110.29418 * 0.44175 * 18 17 16 21 21 C 1.50700 * 125.56893 * 179.70915 * 20 18 17 22 22 O 1.42898 * 109.47248 * 329.99918 * 21 20 18 23 23 Si 1.86303 * 109.47100 * 209.99867 * 21 20 18 24 24 C 1.34487 * 108.85910 * 359.73058 * 20 18 17 25 25 C 1.53776 * 113.69232 * 37.53336 * 8 7 6 26 26 C 1.38117 * 120.05444 * 0.27680 * 7 6 5 27 27 H 1.08994 * 109.47025 * 299.99401 * 1 2 3 28 28 H 1.09000 * 109.47251 * 59.99747 * 1 2 3 29 29 H 1.09003 * 109.46457 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.03074 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.97665 * 179.97438 * 5 4 3 32 32 H 1.07993 * 119.94568 * 180.02562 * 6 5 4 33 33 H 1.08993 * 113.61827 * 25.50972 * 10 8 7 34 34 H 1.09006 * 113.60734 * 254.61000 * 10 8 7 35 35 H 0.96998 * 119.99853 * 336.53388 * 13 11 10 36 36 H 1.08002 * 125.80378 * 359.97438 * 17 16 14 37 37 H 1.09001 * 109.46519 * 270.28390 * 19 18 17 38 38 H 1.08992 * 109.46829 * 30.28041 * 19 18 17 39 39 H 1.08998 * 109.47156 * 150.28685 * 19 18 17 40 40 H 1.09005 * 109.47261 * 90.00288 * 21 20 18 41 41 H 0.96701 * 113.99954 * 179.97438 * 22 21 20 42 42 H 1.48501 * 109.99729 * 60.00373 * 23 21 20 43 43 H 1.48502 * 109.99863 * 181.31837 * 23 21 20 44 44 H 1.08000 * 126.82923 * 180.02562 * 24 20 18 45 45 H 1.09003 * 113.61687 * 105.45764 * 25 8 7 46 46 H 1.09009 * 113.61565 * 334.56112 * 25 8 7 47 47 H 1.08004 * 120.03097 * 179.72577 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2916 2.3749 0.0005 5 6 1.9211 3.6049 0.0011 6 6 3.3018 3.6760 0.0017 7 6 4.0562 2.5169 0.0012 8 6 5.5609 2.5980 0.0012 9 1 6.0366 1.6369 0.1958 10 6 6.1381 3.3353 -1.2187 11 6 7.1529 3.9724 -0.2548 12 1 7.3496 5.0246 -0.4609 13 7 8.3781 3.1865 -0.0888 14 6 9.5157 3.7883 0.3115 15 8 9.5251 4.9837 0.5353 16 6 10.7473 2.9983 0.4779 17 6 10.8958 1.6543 0.2729 18 7 12.1756 1.3239 0.5304 19 6 12.7298 -0.0278 0.4202 20 6 12.8811 2.4270 0.9138 21 6 14.3406 2.4475 1.2887 22 8 14.7050 1.1868 1.8542 23 14 14.6426 3.7981 2.5359 24 6 12.0611 3.4929 0.9031 25 6 6.1178 3.7460 0.8596 26 6 3.4316 1.2850 -0.0057 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 0.2129 2.3200 0.0005 31 1 1.3343 4.5115 0.0011 32 1 3.7920 4.6382 0.0025 33 1 5.4476 4.0524 -1.6625 34 1 6.5922 2.6720 -1.9550 35 1 8.3705 2.2331 -0.2670 36 1 10.1192 0.9739 -0.0440 37 1 12.6185 -0.5448 1.3733 38 1 12.1962 -0.5770 -0.3555 39 1 13.7867 0.0329 0.1609 40 1 14.9418 2.6339 0.3987 41 1 15.6332 1.1280 2.1189 42 1 13.8287 3.5556 3.7541 43 1 16.0839 3.8495 2.8899 44 1 12.3189 4.5106 1.1566 45 1 6.5555 3.4145 1.8013 46 1 5.4216 4.5755 0.9842 47 1 4.0211 0.3801 -0.0105 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13287730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:39:43 Heat of formation + Delta-G solvation = 5.484442 kcal Electronic energy + Delta-G solvation = -28686.686193 eV Core-core repulsion = 24610.407442 eV Total energy + Delta-G solvation = -4076.278751 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.41436 -41.53370 -40.66795 -39.38076 -37.87440 -37.77206 -34.49135 -33.65955 -32.18675 -31.49656 -30.78708 -28.24228 -27.68168 -26.64637 -26.43062 -25.68015 -23.83762 -23.50375 -22.23987 -21.08098 -20.41805 -20.16891 -18.71848 -18.51067 -18.44659 -17.23730 -17.15227 -16.86976 -16.78598 -16.66539 -16.56490 -16.00422 -15.76525 -15.52431 -15.42808 -15.20720 -14.61187 -14.45419 -14.41853 -14.24510 -13.96496 -13.85722 -13.46082 -13.36269 -13.27153 -13.18465 -13.10874 -13.07439 -12.69164 -12.65410 -12.26731 -12.11210 -12.08413 -11.63037 -11.54529 -11.21547 -11.00701 -10.79436 -10.06448 -9.73414 -9.55232 -9.15649 -9.13766 -4.89402 0.33837 0.48817 0.75258 1.02505 1.49998 1.57363 1.88109 2.05659 2.26975 2.35781 2.56426 2.75168 3.13999 3.51345 3.69571 3.74596 3.77779 3.88591 3.89385 3.97659 4.01373 4.11826 4.20411 4.28629 4.29413 4.34909 4.38622 4.40327 4.48396 4.49994 4.55843 4.65464 4.71280 4.71428 4.78056 4.82309 4.88277 4.97394 4.99879 5.01767 5.06186 5.12462 5.22668 5.35158 5.50713 5.60022 5.69009 5.75334 5.83498 6.01751 6.24453 6.44285 6.51551 6.66916 7.37181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.222 4.222 5 C -0.084 4.084 6 C -0.161 4.161 7 C -0.034 4.034 8 C -0.066 4.066 9 H 0.109 0.891 10 C -0.121 4.121 11 C 0.118 3.882 12 H 0.086 0.914 13 N -0.700 5.700 14 C 0.592 3.408 15 O -0.590 6.590 16 C -0.259 4.259 17 C 0.067 3.933 18 N -0.427 5.427 19 C 0.072 3.928 20 C 0.014 3.986 21 C -0.045 4.045 22 O -0.554 6.554 23 Si 0.764 3.236 24 C -0.160 4.160 25 C -0.142 4.142 26 C -0.165 4.165 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.412 0.588 36 H 0.208 0.792 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.400 0.600 42 H -0.313 1.313 43 H -0.270 1.270 44 H 0.156 0.844 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 -4.466 -3.520 5.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.241 4.241 5 C -0.102 4.102 6 C -0.179 4.179 7 C -0.034 4.034 8 C -0.084 4.084 9 H 0.127 0.873 10 C -0.159 4.159 11 C 0.012 3.988 12 H 0.104 0.896 13 N -0.351 5.351 14 C 0.383 3.617 15 O -0.471 6.471 16 C -0.269 4.269 17 C -0.070 4.070 18 N -0.101 5.101 19 C -0.068 4.068 20 C -0.096 4.096 21 C -0.155 4.155 22 O -0.364 6.364 23 Si 0.669 3.331 24 C -0.184 4.184 25 C -0.181 4.181 26 C -0.184 4.184 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.249 0.751 36 H 0.224 0.776 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.252 0.748 42 H -0.241 1.241 43 H -0.196 1.196 44 H 0.174 0.826 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.374 -4.100 -2.715 4.932 hybrid contribution 0.185 -1.229 0.405 1.307 sum 0.559 -5.329 -2.309 5.835 Atomic orbital electron populations 1.23291 0.76681 1.05370 1.02093 1.86040 1.23257 1.27293 1.88811 1.19289 0.92839 0.84628 0.96823 1.21482 1.00913 0.92424 1.09273 1.21241 0.94983 0.97559 0.96408 1.21183 0.93826 0.98801 1.04054 1.19631 0.95554 0.91873 0.96321 1.21597 0.89822 0.99455 0.97569 0.87283 1.23354 0.96777 0.99817 0.95911 1.21801 0.83403 0.96402 0.97144 0.89563 1.45352 1.08203 1.12491 1.69018 1.17611 0.82884 0.86161 0.75085 1.90746 1.86168 1.16994 1.53239 1.20282 0.94281 0.93967 1.18391 1.22405 0.87274 0.95375 1.01956 1.43723 1.08241 1.09078 1.49065 1.22320 1.01558 0.79001 1.03929 1.19924 0.93893 0.87017 1.08723 1.24373 0.91439 0.94515 1.05149 1.86485 1.34661 1.32177 1.83105 0.93517 0.77355 0.85167 0.77088 1.21746 0.91298 0.98608 1.06746 1.23559 0.97977 0.98809 0.97720 1.20503 0.91449 0.98844 1.07586 0.91948 0.91818 0.86665 0.84285 0.83937 0.84347 0.87901 0.89238 0.75072 0.77578 0.90729 0.87702 0.88699 0.87847 0.74812 1.24078 1.19622 0.82608 0.91768 0.88306 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.91 10.50 -92.49 -0.97 -2.88 16 3 C 0.11 0.60 6.69 22.51 0.15 0.75 16 4 C -0.22 -0.63 9.04 22.36 0.20 -0.42 16 5 C -0.08 -0.11 10.04 22.26 0.22 0.12 16 6 C -0.16 -0.16 8.61 22.29 0.19 0.04 16 7 C -0.03 -0.05 5.29 -19.88 -0.11 -0.15 16 8 C -0.07 0.15 3.86 -11.02 -0.04 0.11 16 9 H 0.11 -0.49 8.09 -2.39 -0.02 -0.51 16 10 C -0.12 0.42 7.29 31.12 0.23 0.65 16 11 C 0.12 0.10 4.30 45.52 0.20 0.30 16 12 H 0.09 0.46 7.50 -2.39 -0.02 0.44 16 13 N -0.70 -0.59 5.26 -443.45 -2.33 -2.92 16 14 C 0.59 5.15 7.81 86.62 0.68 5.83 16 15 O -0.59 -10.42 16.59 -4.11 -0.07 -10.49 16 16 C -0.26 -1.53 6.29 -19.04 -0.12 -1.65 16 17 C 0.07 -0.05 10.83 83.91 0.91 0.86 16 18 N -0.43 -0.16 3.09 -533.25 -1.65 -1.80 16 19 C 0.07 -0.38 9.81 127.77 1.25 0.87 16 20 C 0.01 0.04 6.17 40.98 0.25 0.30 16 21 C -0.05 0.08 2.86 71.24 0.20 0.28 16 22 O -0.55 1.35 10.29 -148.98 -1.53 -0.19 16 23 Si 0.76 -0.18 31.12 68.60 2.13 1.95 16 24 C -0.16 -1.03 9.49 23.62 0.22 -0.80 16 25 C -0.14 -0.02 7.26 31.12 0.23 0.21 16 26 C -0.17 -0.67 9.65 22.37 0.22 -0.46 16 27 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 28 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 29 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.14 -0.12 6.30 -2.91 -0.02 -0.13 16 31 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 32 H 0.14 -0.31 6.66 -2.91 -0.02 -0.33 16 33 H 0.10 -0.38 7.72 -2.39 -0.02 -0.40 16 34 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 35 H 0.41 -2.39 7.65 -92.71 -0.71 -3.10 16 36 H 0.21 -2.00 7.45 -2.91 -0.02 -2.02 16 37 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.10 -1.09 8.13 -2.39 -0.02 -1.11 16 39 H 0.09 -0.50 6.73 -2.39 -0.02 -0.51 16 40 H 0.10 -0.63 7.96 -2.38 -0.02 -0.65 16 41 H 0.40 -4.05 8.74 -74.06 -0.65 -4.70 16 42 H -0.31 -3.10 7.11 99.48 0.71 -2.39 16 43 H -0.27 -0.46 7.11 99.48 0.71 0.24 16 44 H 0.16 0.80 6.89 -2.91 -0.02 0.78 16 45 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.10 -0.05 6.32 -2.38 -0.02 -0.07 16 47 H 0.13 0.29 8.05 -2.91 -0.02 0.26 16 Total: 0.00 -26.18 386.30 1.27 -24.91 By element: Atomic # 1 Polarization: -16.16 SS G_CDS: -0.31 Total: -16.47 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.00 Total: 7.89 kcal Atomic # 7 Polarization: -0.74 SS G_CDS: -3.98 Total: -4.72 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -2.57 Total: -13.56 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.13 Total: 1.95 kcal Total: -26.18 1.27 -24.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13287730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.392 kcal (2) G-P(sol) polarization free energy of solvation -26.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds