Wall clock time and date at job start Sat Mar 6 2021 14:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35896 * 117.00092 * 2 1 4 4 C 1.38714 * 120.05475 * 180.02562 * 3 2 1 5 5 C 1.38172 * 119.94246 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.97076 * 180.02562 * 5 4 3 7 7 H 1.09003 * 112.84959 * 348.79508 * 6 5 4 8 8 C 1.53780 * 113.61954 * 119.99861 * 6 5 4 9 9 C 1.53778 * 87.08588 * 139.97614 * 8 6 5 10 10 H 1.08994 * 113.61674 * 219.93877 * 9 8 6 11 11 N 1.46506 * 113.61191 * 89.11379 * 9 8 6 12 12 C 1.34775 * 119.99694 * 155.00177 * 11 9 8 13 13 O 1.21553 * 120.00214 * 0.02562 * 12 11 9 14 14 C 1.47836 * 119.99999 * 180.02562 * 12 11 9 15 15 C 1.39523 * 120.55742 * 359.97438 * 14 12 11 16 16 N 1.31694 * 120.56847 * 180.02562 * 15 14 12 17 17 C 1.31933 * 121.87963 * 359.97438 * 16 15 14 18 18 C 1.38351 * 121.07487 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.34372 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47532 * 245.04371 * 19 18 17 21 21 Si 1.86298 * 109.47308 * 5.04727 * 19 18 17 22 22 C 1.38357 * 119.30800 * 0.02562 * 18 17 16 23 23 C 1.53780 * 87.08052 * 334.56949 * 9 8 6 24 24 C 1.38246 * 120.05597 * 0.26730 * 5 4 3 25 25 C 1.38289 * 120.11234 * 359.45661 * 24 5 4 26 26 C 1.38123 * 120.05037 * 0.54631 * 25 24 5 27 27 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47277 * 300.00375 * 1 2 3 29 29 H 1.09000 * 109.47392 * 60.00183 * 1 2 3 30 30 H 1.07991 * 120.03039 * 359.95301 * 4 3 2 31 31 H 1.09007 * 113.61392 * 25.42629 * 8 6 5 32 32 H 1.08997 * 113.68651 * 254.54038 * 8 6 5 33 33 H 0.96995 * 120.00136 * 335.00014 * 11 9 8 34 34 H 1.07998 * 119.72093 * 0.02739 * 15 14 12 35 35 H 1.08000 * 119.45770 * 179.97438 * 17 16 15 36 36 H 1.09010 * 109.46815 * 125.04772 * 19 18 17 37 37 H 0.96701 * 114.00352 * 180.02562 * 20 19 18 38 38 H 1.48500 * 110.00037 * 299.99799 * 21 19 18 39 39 H 1.48503 * 109.99979 * 61.31793 * 21 19 18 40 40 H 1.07994 * 120.85854 * 179.97438 * 22 18 17 41 41 H 1.09002 * 113.61889 * 139.97925 * 23 9 8 42 42 H 1.09000 * 113.61181 * 270.88117 * 23 9 8 43 43 H 1.07993 * 119.94209 * 179.70786 * 24 5 4 44 44 H 1.07996 * 119.97377 * 180.28926 * 25 24 5 45 45 H 1.08007 * 120.02691 * 179.70389 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4311 1.2847 -0.0005 5 6 4.0560 2.5171 -0.0011 6 6 5.5608 2.5981 -0.0022 7 1 6.0366 1.6369 0.1926 8 6 6.1372 3.3346 -1.2229 9 6 7.1513 3.9740 -0.2598 10 1 7.3479 5.0257 -0.4678 11 7 8.3765 3.1886 -0.0914 12 6 9.5211 3.7965 0.2784 13 8 9.5367 4.9963 0.4728 14 6 10.7576 3.0041 0.4478 15 6 10.7527 1.6262 0.2283 16 7 11.8540 0.9200 0.3796 17 6 12.9946 1.4766 0.7399 18 6 13.0824 2.8371 0.9753 19 6 14.3937 3.4555 1.3867 20 8 14.2794 3.9771 2.7122 21 14 15.7321 2.1604 1.3423 22 6 11.9536 3.6238 0.8302 23 6 6.1165 3.7476 0.8550 24 6 3.3020 3.6758 0.0045 25 6 1.9209 3.6048 -0.0007 26 6 1.2915 2.3753 -0.0001 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.0206 0.3799 -0.0002 31 1 5.4459 4.0506 -1.6675 32 1 6.5921 2.6722 -1.9594 33 1 8.3639 2.2311 -0.2461 34 1 9.8381 1.1345 -0.0682 35 1 13.8741 0.8600 0.8528 36 1 14.6462 4.2628 0.6992 37 1 15.0881 4.3915 3.0430 38 1 15.3997 1.0542 2.2756 39 1 15.8828 1.6328 -0.0376 40 1 11.9936 4.6882 1.0080 41 1 6.5545 3.4176 1.7970 42 1 5.4195 4.5765 0.9785 43 1 3.7923 4.6380 0.0089 44 1 1.3341 4.5114 -0.0010 45 1 0.2128 2.3204 0.0007 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13287814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:39:56 Heat of formation + Delta-G solvation = -4.532733 kcal Electronic energy + Delta-G solvation = -27969.421689 eV Core-core repulsion = 23920.020040 eV Total energy + Delta-G solvation = -4049.401650 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.14519 -41.47264 -40.71718 -39.59982 -37.90701 -37.86033 -34.90360 -33.98348 -33.16596 -32.05040 -30.91586 -28.25929 -27.35125 -26.79307 -26.69412 -25.31199 -23.87458 -23.58125 -22.40712 -21.83786 -20.36727 -19.17520 -18.77638 -18.53067 -18.21885 -17.89234 -17.25478 -17.01030 -16.81518 -16.68817 -16.38520 -16.19514 -15.80894 -15.58488 -15.35681 -15.00112 -14.85824 -14.49700 -14.43462 -14.31770 -14.27707 -14.02653 -13.83731 -13.51153 -13.28271 -13.22470 -12.69581 -12.64258 -12.32867 -12.18925 -12.13856 -11.70285 -11.61169 -11.51531 -11.29420 -11.19672 -10.84497 -10.60848 -10.27848 -10.17512 -9.76299 -9.17002 -4.97520 -0.74457 -0.15468 0.31120 0.46399 1.22196 1.51657 1.64133 1.82565 1.91834 2.33780 2.46767 2.72202 2.91833 3.17957 3.39005 3.43138 3.56273 3.56933 3.66219 3.70829 3.73184 3.86075 3.93510 3.99340 4.07358 4.13642 4.17446 4.26179 4.33098 4.37256 4.43249 4.52930 4.59000 4.61618 4.69336 4.70056 4.75958 4.76857 4.84634 4.94138 4.99959 5.07094 5.10063 5.16415 5.32921 5.43403 5.49837 5.67780 5.81271 6.27461 6.42206 6.46361 6.84866 6.94819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.166 4.166 5 C -0.034 4.034 6 C -0.069 4.069 7 H 0.109 0.891 8 C -0.122 4.122 9 C 0.115 3.885 10 H 0.094 0.906 11 N -0.692 5.692 12 C 0.571 3.429 13 O -0.567 6.567 14 C -0.192 4.192 15 C 0.143 3.857 16 N -0.497 5.497 17 C 0.109 3.891 18 C -0.141 4.141 19 C -0.080 4.080 20 O -0.565 6.565 21 Si 0.780 3.220 22 C 0.003 3.997 23 C -0.141 4.141 24 C -0.160 4.160 25 C -0.084 4.084 26 C -0.222 4.222 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.415 0.585 34 H 0.196 0.804 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.407 0.593 38 H -0.289 1.289 39 H -0.281 1.281 40 H 0.149 0.851 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 0.483 -1.245 1.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.185 4.185 5 C -0.034 4.034 6 C -0.088 4.088 7 H 0.128 0.872 8 C -0.160 4.160 9 C 0.010 3.990 10 H 0.112 0.888 11 N -0.343 5.343 12 C 0.358 3.642 13 O -0.446 6.446 14 C -0.197 4.197 15 C -0.015 4.015 16 N -0.204 5.204 17 C -0.046 4.046 18 C -0.143 4.143 19 C -0.190 4.190 20 O -0.375 6.375 21 Si 0.684 3.316 22 C -0.024 4.024 23 C -0.179 4.179 24 C -0.178 4.178 25 C -0.102 4.102 26 C -0.241 4.241 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.213 0.787 35 H 0.175 0.825 36 H 0.119 0.881 37 H 0.259 0.741 38 H -0.216 1.216 39 H -0.208 1.208 40 H 0.167 0.833 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.502 -0.825 -1.495 1.780 hybrid contribution -0.955 0.608 0.062 1.134 sum -0.453 -0.217 -1.434 1.519 Atomic orbital electron populations 1.23291 0.76657 1.05378 1.02108 1.86038 1.23283 1.27336 1.88793 1.19298 0.92853 0.84642 0.96805 1.20512 0.91477 0.98888 1.07603 1.19609 0.95510 0.91848 0.96453 1.21640 0.89988 0.99554 0.97584 0.87243 1.23379 0.96744 0.99910 0.95940 1.21926 0.82922 0.96535 0.97587 0.88766 1.45461 1.07877 1.12388 1.68586 1.18036 0.83414 0.86588 0.76190 1.90796 1.85972 1.15968 1.51889 1.21069 0.95099 0.96009 1.07552 1.23493 0.97348 0.89212 0.91460 1.67735 0.99328 1.40095 1.13266 1.22917 0.96229 0.92165 0.93325 1.20702 0.97009 0.94361 1.02234 1.24836 0.99171 1.07210 0.87779 1.86439 1.42991 1.79786 1.28312 0.93871 0.83427 0.76078 0.78182 1.21724 0.90132 1.01557 0.88963 1.23569 0.97796 0.98899 0.97636 1.21182 0.93793 0.98793 1.04039 1.21247 0.95028 0.97535 0.96357 1.21492 1.00928 0.92437 1.09202 0.86691 0.91915 0.91802 0.85069 0.87589 0.89199 0.74667 0.78712 0.82545 0.88120 0.74061 1.21626 1.20752 0.83315 0.91407 0.87902 0.84171 0.83891 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.92 10.50 -92.38 -0.97 -2.89 16 3 C 0.11 0.57 6.69 22.51 0.15 0.72 16 4 C -0.17 -0.62 9.65 22.37 0.22 -0.40 16 5 C -0.03 -0.02 5.29 -19.88 -0.11 -0.12 16 6 C -0.07 0.25 3.86 -11.01 -0.04 0.21 16 7 H 0.11 -0.62 8.09 -2.39 -0.02 -0.64 16 8 C -0.12 0.62 7.29 31.12 0.23 0.85 16 9 C 0.12 -0.20 4.32 45.51 0.20 0.00 16 10 H 0.09 0.19 7.46 -2.39 -0.02 0.17 16 11 N -0.69 1.17 5.22 -442.92 -2.31 -1.14 16 12 C 0.57 2.99 7.78 86.78 0.68 3.67 16 13 O -0.57 -7.45 16.02 -3.88 -0.06 -7.51 16 14 C -0.19 -0.80 5.89 -19.99 -0.12 -0.92 16 15 C 0.14 0.21 10.71 85.02 0.91 1.12 16 16 N -0.50 -2.96 10.35 -194.75 -2.01 -4.98 16 17 C 0.11 0.61 9.84 84.70 0.83 1.44 16 18 C -0.14 -0.61 5.39 -19.81 -0.11 -0.71 16 19 C -0.08 0.14 2.81 71.24 0.20 0.34 16 20 O -0.56 0.52 12.82 -148.98 -1.91 -1.39 16 21 Si 0.78 -3.21 29.88 68.60 2.05 -1.16 16 22 C 0.00 0.02 9.38 22.73 0.21 0.23 16 23 C -0.14 0.30 7.25 31.12 0.23 0.53 16 24 C -0.16 0.02 8.62 22.28 0.19 0.21 16 25 C -0.08 -0.04 10.04 22.25 0.22 0.18 16 26 C -0.22 -0.53 9.04 22.37 0.20 -0.33 16 27 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 29 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 30 H 0.13 0.28 8.05 -2.92 -0.02 0.25 16 31 H 0.11 -0.58 7.73 -2.38 -0.02 -0.60 16 32 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.41 -3.16 6.77 -92.71 -0.63 -3.78 16 34 H 0.20 -1.34 6.42 -2.91 -0.02 -1.35 16 35 H 0.16 0.59 4.87 -2.91 -0.01 0.57 16 36 H 0.10 -0.59 7.96 -2.38 -0.02 -0.61 16 37 H 0.41 -4.77 8.74 -74.06 -0.65 -5.41 16 38 H -0.29 -0.84 7.05 99.48 0.70 -0.14 16 39 H -0.28 -0.25 7.11 99.48 0.71 0.46 16 40 H 0.15 0.93 7.74 -2.91 -0.02 0.91 16 41 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.10 -0.30 6.29 -2.39 -0.02 -0.31 16 43 H 0.14 -0.52 6.63 -2.91 -0.02 -0.54 16 44 H 0.14 -0.53 8.06 -2.91 -0.02 -0.56 16 45 H 0.14 -0.16 6.30 -2.91 -0.02 -0.18 16 Total: 0.00 -24.29 373.46 -0.20 -24.49 By element: Atomic # 1 Polarization: -13.33 SS G_CDS: -0.19 Total: -13.52 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.21 Total: 8.08 kcal Atomic # 7 Polarization: -1.79 SS G_CDS: -4.33 Total: -6.12 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -2.94 Total: -11.78 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.05 Total: -1.16 kcal Total: -24.29 -0.20 -24.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13287814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.957 kcal (2) G-P(sol) polarization free energy of solvation -24.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds