Wall clock time and date at job start Sat Mar 6 2021 14:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38706 * 120.05957 * 0.02562 * 3 2 1 5 5 C 1.38162 * 119.94729 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.05356 * 0.02562 * 5 4 3 7 7 C 1.38291 * 120.11155 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.97198 * 180.02562 * 7 6 5 9 9 H 1.08995 * 112.84779 * 191.20061 * 8 7 6 10 10 C 1.53785 * 113.61106 * 322.50185 * 8 7 6 11 11 C 1.53780 * 87.07787 * 139.98385 * 10 8 7 12 12 H 1.09004 * 113.68594 * 220.00345 * 11 10 8 13 13 N 1.46498 * 113.61442 * 89.11446 * 11 10 8 14 14 C 1.34786 * 119.99950 * 107.50247 * 13 11 10 15 15 O 1.21615 * 119.99872 * 359.97438 * 14 13 11 16 16 C 1.47376 * 120.00107 * 179.97438 * 14 13 11 17 17 C 1.36414 * 127.19284 * 179.70600 * 16 14 13 18 18 C 1.50701 * 125.80008 * 0.02562 * 17 16 14 19 19 O 1.33653 * 108.39709 * 179.83721 * 17 16 14 20 20 C 1.34221 * 110.90721 * 0.44894 * 19 17 16 21 21 C 1.50703 * 125.43726 * 179.72472 * 20 19 17 22 22 O 1.42898 * 109.47020 * 245.00135 * 21 20 19 23 23 Si 1.86294 * 109.47118 * 5.00307 * 21 20 19 24 24 C 1.34176 * 109.12266 * 359.72543 * 20 19 17 25 25 C 1.53773 * 113.61630 * 59.99768 * 8 7 6 26 26 C 1.38122 * 120.05277 * 359.76643 * 7 6 5 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 30 30 H 1.08002 * 120.02873 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.97579 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.94666 * 179.97438 * 6 5 4 33 33 H 1.09009 * 113.60811 * 254.53120 * 10 8 7 34 34 H 1.08992 * 113.61658 * 25.43412 * 10 8 7 35 35 H 0.96996 * 120.00528 * 287.49622 * 13 11 10 36 36 H 1.09000 * 109.47435 * 89.99453 * 18 17 16 37 37 H 1.08996 * 109.46517 * 209.99872 * 18 17 16 38 38 H 1.09001 * 109.46874 * 329.99397 * 18 17 16 39 39 H 1.09000 * 109.46923 * 125.00255 * 21 20 19 40 40 H 0.96703 * 114.00140 * 60.00055 * 22 21 20 41 41 H 1.48502 * 110.00262 * 58.67954 * 23 21 20 42 42 H 1.48497 * 110.00115 * 179.97438 * 23 21 20 43 43 H 1.08003 * 127.01952 * 180.02562 * 24 20 19 44 44 H 1.09009 * 113.61533 * 334.57041 * 25 8 7 45 45 H 1.09003 * 113.61697 * 105.38559 * 25 8 7 46 46 H 1.08007 * 120.02335 * 180.27687 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2916 2.3750 0.0005 5 6 1.9212 3.6048 0.0000 6 6 3.3018 3.6759 -0.0016 7 6 4.0561 2.5168 -0.0021 8 6 5.5610 2.5979 -0.0033 9 1 6.0365 1.6368 -0.1987 10 6 6.1152 3.7473 -0.8616 11 6 7.1518 3.9738 0.2516 12 1 7.3487 5.0257 0.4591 13 7 8.3767 3.1885 0.0815 14 6 9.5208 3.7963 -0.2902 15 8 9.5361 4.9967 -0.4849 16 6 10.7532 3.0064 -0.4608 17 6 11.9820 3.4657 -0.8350 18 6 12.3285 4.8974 -1.1532 19 8 12.8272 2.4309 -0.8675 20 6 12.2014 1.2907 -0.5362 21 6 12.8425 -0.0717 -0.4739 22 8 12.2652 -0.9159 -1.4719 23 14 14.6732 0.0890 -0.7797 24 6 10.9138 1.5576 -0.2694 25 6 6.1392 3.3346 1.2164 26 6 3.4315 1.2849 0.0038 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2130 2.3200 0.0014 31 1 1.3343 4.5114 0.0000 32 1 3.7922 4.6381 -0.0024 33 1 6.5519 3.4170 -1.8042 34 1 5.4181 4.5761 -0.9842 35 1 8.3645 2.2310 0.2365 36 1 12.6521 5.4037 -0.2438 37 1 13.1327 4.9217 -1.8885 38 1 11.4512 5.4023 -1.5576 39 1 12.6756 -0.5071 0.5113 40 1 12.3760 -0.5894 -2.3754 41 1 15.2801 0.9901 0.2327 42 1 15.3173 -1.2477 -0.7203 43 1 10.1512 0.8521 0.0261 44 1 5.4484 4.0506 1.6618 45 1 6.5938 2.6712 1.9521 46 1 4.0211 0.3800 0.0079 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13308374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:39:59 Heat of formation + Delta-G solvation = -31.009881 kcal Electronic energy + Delta-G solvation = -28973.213763 eV Core-core repulsion = 24797.633838 eV Total energy + Delta-G solvation = -4175.579926 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.77351 -41.63910 -40.80091 -39.57830 -38.00723 -37.86100 -34.74378 -33.93819 -33.07481 -32.09334 -30.94855 -29.38069 -28.24976 -26.70870 -26.55393 -25.54025 -24.25305 -23.57326 -22.62431 -22.04117 -20.85095 -20.12128 -18.99434 -18.71437 -17.94971 -17.66811 -17.25290 -17.02696 -16.85820 -16.76518 -16.68058 -16.06551 -15.98036 -15.80399 -15.58035 -15.26152 -14.76807 -14.47536 -14.34712 -14.26825 -14.15158 -14.05935 -13.90320 -13.81652 -13.48986 -13.25249 -13.19955 -12.87449 -12.76768 -12.68058 -12.30494 -12.24833 -12.12030 -11.66135 -11.59059 -11.27780 -11.15067 -10.94206 -10.60348 -10.13468 -9.75887 -9.58987 -9.16441 -5.00430 0.21976 0.31787 0.46882 0.82094 1.17115 1.40609 1.74968 1.90930 2.09991 2.21988 2.34272 2.72841 3.22038 3.44892 3.47775 3.66393 3.70430 3.75303 3.77740 3.86962 3.95546 4.08155 4.10949 4.17967 4.26818 4.31193 4.33845 4.37787 4.45544 4.53438 4.59732 4.61589 4.62300 4.67616 4.70031 4.77135 4.77755 4.87580 4.96194 5.01013 5.08334 5.12077 5.17400 5.21691 5.33306 5.48009 5.53643 5.69439 5.81751 5.89196 6.42732 6.46211 6.62075 7.14037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.222 4.222 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.034 4.034 8 C -0.068 4.068 9 H 0.105 0.895 10 C -0.138 4.138 11 C 0.118 3.882 12 H 0.093 0.907 13 N -0.696 5.696 14 C 0.592 3.408 15 O -0.572 6.572 16 C -0.270 4.270 17 C 0.087 3.913 18 C -0.085 4.085 19 O -0.170 6.170 20 C -0.060 4.060 21 C -0.024 4.024 22 O -0.540 6.540 23 Si 0.776 3.224 24 C -0.149 4.149 25 C -0.124 4.124 26 C -0.167 4.167 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.412 0.588 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.400 0.600 41 H -0.296 1.296 42 H -0.280 1.280 43 H 0.176 0.824 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 -0.759 -1.217 1.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.240 4.240 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.034 4.034 8 C -0.086 4.086 9 H 0.123 0.877 10 C -0.177 4.177 11 C 0.012 3.988 12 H 0.111 0.889 13 N -0.346 5.346 14 C 0.381 3.619 15 O -0.453 6.453 16 C -0.274 4.274 17 C 0.033 3.967 18 C -0.141 4.141 19 O -0.068 6.068 20 C -0.108 4.108 21 C -0.134 4.134 22 O -0.348 6.348 23 Si 0.681 3.319 24 C -0.168 4.168 25 C -0.162 4.162 26 C -0.186 4.186 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.249 0.751 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.156 0.844 40 H 0.250 0.750 41 H -0.223 1.223 42 H -0.206 1.206 43 H 0.193 0.807 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.333 -0.603 -0.594 0.910 hybrid contribution -1.110 -0.457 0.581 1.334 sum -1.444 -1.060 -0.013 1.791 Atomic orbital electron populations 1.23292 0.76644 1.05377 1.02122 1.86042 1.23294 1.27312 1.88793 1.19287 0.92798 0.84678 0.96791 1.21488 1.00938 0.92404 1.09198 1.21250 0.94982 0.97562 0.96317 1.21180 0.93815 0.98744 1.04039 1.19613 0.95457 0.91904 0.96436 1.21599 0.89976 0.99446 0.97619 0.87650 1.23548 0.97794 0.98725 0.97616 1.21862 0.83140 0.96452 0.97298 0.88901 1.45376 1.07964 1.12159 1.69121 1.17347 0.82788 0.86130 0.75620 1.90756 1.86100 1.15619 1.52817 1.21196 0.94844 0.94792 1.16592 1.23243 0.87177 0.90528 0.95712 1.20718 1.04995 0.84165 1.04227 1.83674 1.39409 1.15143 1.68529 1.22903 0.93058 0.87874 1.06961 1.24466 1.09744 0.82861 0.96330 1.86535 1.81164 1.47503 1.19621 0.93254 0.71459 0.78028 0.89168 1.22796 0.97026 0.93288 1.03676 1.23375 0.96958 0.99876 0.95955 1.20502 0.91517 0.98848 1.07687 0.91869 0.86696 0.91816 0.84230 0.83812 0.84167 0.91461 0.87913 0.75131 0.88592 0.87917 0.88376 0.84356 0.74957 1.22265 1.20601 0.80690 0.87654 0.89734 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.08 16 2 O -0.34 -1.97 10.50 -92.48 -0.97 -2.94 16 3 C 0.11 0.61 6.69 22.50 0.15 0.76 16 4 C -0.22 -0.56 9.04 22.36 0.20 -0.36 16 5 C -0.08 -0.06 10.04 22.25 0.22 0.17 16 6 C -0.16 -0.05 8.61 22.28 0.19 0.14 16 7 C -0.03 -0.04 5.29 -19.88 -0.11 -0.15 16 8 C -0.07 0.16 3.86 -11.01 -0.04 0.12 16 9 H 0.11 -0.40 8.09 -2.39 -0.02 -0.42 16 10 C -0.14 0.18 7.25 31.12 0.23 0.41 16 11 C 0.12 -0.05 4.32 45.52 0.20 0.15 16 12 H 0.09 0.28 7.46 -2.39 -0.02 0.27 16 13 N -0.70 -0.20 5.26 -443.34 -2.33 -2.53 16 14 C 0.59 3.60 7.81 86.65 0.68 4.27 16 15 O -0.57 -6.94 14.45 -4.08 -0.06 -6.99 16 16 C -0.27 -1.09 6.31 -18.99 -0.12 -1.21 16 17 C 0.09 0.29 7.37 25.26 0.19 0.48 16 18 C -0.09 -0.01 9.89 71.24 0.70 0.70 16 19 O -0.17 -0.33 8.90 4.41 0.04 -0.29 16 20 C -0.06 0.00 6.18 24.76 0.15 0.15 16 21 C -0.02 0.07 2.97 71.24 0.21 0.28 16 22 O -0.54 1.73 12.88 -148.98 -1.92 -0.18 16 23 Si 0.78 -1.98 32.09 68.60 2.20 0.22 16 24 C -0.15 -0.03 10.48 23.65 0.25 0.22 16 25 C -0.12 0.44 7.29 31.12 0.23 0.67 16 26 C -0.17 -0.72 9.65 22.36 0.22 -0.50 16 27 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 28 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 30 H 0.14 -0.16 6.30 -2.91 -0.02 -0.18 16 31 H 0.14 -0.53 8.06 -2.91 -0.02 -0.56 16 32 H 0.14 -0.46 6.65 -2.91 -0.02 -0.48 16 33 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.10 -0.24 6.31 -2.39 -0.02 -0.26 16 35 H 0.41 -1.74 7.87 -92.71 -0.73 -2.47 16 36 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.10 0.31 6.49 -2.39 -0.02 0.30 16 39 H 0.14 -0.56 7.96 -2.39 -0.02 -0.58 16 40 H 0.40 -4.21 8.70 -74.06 -0.64 -4.86 16 41 H -0.30 -1.35 7.11 99.48 0.71 -0.64 16 42 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 43 H 0.18 -0.76 7.74 -2.91 -0.02 -0.78 16 44 H 0.11 -0.44 7.72 -2.38 -0.02 -0.46 16 45 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.13 0.38 8.05 -2.91 -0.02 0.35 16 Total: 0.00 -19.59 384.60 1.31 -18.28 By element: Atomic # 1 Polarization: -12.62 SS G_CDS: -0.31 Total: -12.92 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 4.66 Total: 7.36 kcal Atomic # 7 Polarization: -0.20 SS G_CDS: -2.33 Total: -2.53 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -2.91 Total: -10.41 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.20 Total: 0.22 kcal Total: -19.59 1.31 -18.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13308374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.728 kcal (2) G-P(sol) polarization free energy of solvation -19.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds