Wall clock time and date at job start Sat Mar 6 2021 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38707 * 120.05613 * 179.72945 * 3 2 1 5 5 C 1.38171 * 119.94129 * 179.72371 * 4 3 2 6 6 C 1.50701 * 119.97009 * 180.27206 * 5 4 3 7 7 H 1.09000 * 112.85069 * 349.10191 * 6 5 4 8 8 C 1.53781 * 113.61149 * 120.29973 * 6 5 4 9 9 C 1.53783 * 87.08061 * 139.98235 * 8 6 5 10 10 H 1.08998 * 113.60952 * 219.93901 * 9 8 6 11 11 N 1.46496 * 113.61463 * 89.11524 * 9 8 6 12 12 C 1.34780 * 119.99920 * 155.00109 * 11 9 8 13 13 O 1.21600 * 119.99896 * 0.02562 * 12 11 9 14 14 C 1.47555 * 120.00071 * 179.97438 * 12 11 9 15 15 C 1.39828 * 120.00350 * 359.72236 * 14 12 11 16 16 C 1.36562 * 120.00128 * 179.74006 * 15 14 12 17 17 C 1.39819 * 119.99974 * 0.55916 * 16 15 14 18 18 C 1.47557 * 120.00004 * 179.71722 * 17 16 15 19 19 C 1.34980 * 125.27632 * 359.97438 * 18 17 16 20 20 C 1.37801 * 114.70179 * 179.97438 * 19 18 17 21 21 C 1.33746 * 115.07996 * 359.97438 * 20 19 18 22 22 C 1.50701 * 125.11739 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.46791 * 300.00302 * 22 21 20 24 24 Si 1.86296 * 109.47025 * 179.97438 * 22 21 20 25 25 S 1.75856 * 109.76414 * 359.77326 * 21 20 19 26 26 C 1.39825 * 120.00240 * 359.69332 * 17 16 15 27 27 C 1.36558 * 120.00152 * 0.02669 * 26 17 16 28 28 C 1.53778 * 113.61387 * 217.79755 * 6 5 4 29 29 C 1.38240 * 120.05515 * 0.57353 * 5 4 3 30 30 C 1.38285 * 120.11216 * 359.67994 * 29 5 4 31 31 C 1.38122 * 120.05743 * 0.04487 * 30 29 5 32 32 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 34 34 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 35 35 H 1.07994 * 120.02905 * 359.97438 * 4 3 2 36 36 H 1.09001 * 113.61405 * 254.52467 * 8 6 5 37 37 H 1.08997 * 113.61678 * 25.42931 * 8 6 5 38 38 H 0.96998 * 120.00240 * 335.00052 * 11 9 8 39 39 H 1.07997 * 119.99843 * 0.02562 * 15 14 12 40 40 H 1.08000 * 119.99689 * 180.27680 * 16 15 14 41 41 H 1.07995 * 122.64991 * 359.97438 * 19 18 17 42 42 H 1.08000 * 122.45615 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.47229 * 60.00071 * 22 21 20 44 44 H 0.96700 * 113.99581 * 299.99230 * 23 22 21 45 45 H 1.48504 * 109.99770 * 58.68254 * 24 22 21 46 46 H 1.48498 * 109.99756 * 179.97438 * 24 22 21 47 47 H 1.07999 * 119.99956 * 180.02562 * 26 17 16 48 48 H 1.08000 * 120.00117 * 179.97438 * 27 26 17 49 49 H 1.09002 * 113.61540 * 334.56468 * 28 6 5 50 50 H 1.08996 * 113.61563 * 105.47120 * 28 6 5 51 51 H 1.07995 * 119.94441 * 179.69840 * 29 5 4 52 52 H 1.08002 * 119.97132 * 180.02562 * 30 29 5 53 53 H 1.08002 * 120.03161 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4312 1.2847 0.0057 5 6 4.0561 2.5170 -0.0001 6 6 5.5609 2.5980 -0.0002 7 1 6.0365 1.6368 0.1945 8 6 6.1380 3.3351 -1.2202 9 6 7.1516 3.9739 -0.2560 10 1 7.3483 5.0258 -0.4634 11 7 8.3766 3.1885 -0.0874 12 6 9.5210 3.7961 0.2836 13 8 9.5366 4.9963 0.4787 14 6 10.7548 3.0049 0.4541 15 6 10.7354 1.6238 0.2364 16 6 11.8785 0.8924 0.3890 17 6 13.0656 1.5227 0.7743 18 6 14.2992 0.7314 0.9452 19 6 14.4025 -0.6015 0.7591 20 6 15.6610 -1.1179 0.9790 21 6 16.5858 -0.2223 1.3416 22 6 18.0295 -0.5381 1.6369 23 8 18.1020 -1.4659 2.7213 24 14 18.9260 1.0285 2.0980 25 16 15.8653 1.3801 1.4151 26 6 13.0838 2.9030 0.9971 27 6 11.9422 3.6354 0.8389 28 6 6.1160 3.7470 0.8580 29 6 3.3021 3.6757 0.0004 30 6 1.9210 3.6047 0.0001 31 6 1.2915 2.3753 0.0001 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5138 0.8900 35 1 4.0206 0.3799 0.0105 36 1 6.5934 2.6720 -1.9558 37 1 5.4470 4.0513 -1.6648 38 1 8.3641 2.2311 -0.2426 39 1 9.8174 1.1362 -0.0569 40 1 11.8644 -0.1737 0.2165 41 1 13.5649 -1.2148 0.4615 42 1 15.8841 -2.1686 0.8667 43 1 18.4940 -0.9753 0.7529 44 1 17.7069 -1.1426 3.5425 45 1 18.2829 1.6518 3.2826 46 1 20.3508 0.7305 2.3921 47 1 14.0009 3.3899 1.2942 48 1 11.9562 4.7014 1.0114 49 1 5.4189 4.5759 0.9815 50 1 6.5534 3.4165 1.8000 51 1 3.7924 4.6379 0.0008 52 1 1.3342 4.5114 0.0001 53 1 0.2129 2.3203 0.0003 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13308390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:40:03 Heat of formation + Delta-G solvation = 19.047793 kcal Electronic energy + Delta-G solvation = -35024.518291 eV Core-core repulsion = 30306.737527 eV Total energy + Delta-G solvation = -4717.780764 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.138 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.81067 -41.13677 -40.33675 -39.55059 -38.96770 -37.86534 -37.45983 -34.77578 -33.40210 -32.33711 -31.99077 -30.98317 -30.36019 -28.24058 -27.39333 -26.68250 -26.01084 -24.68079 -23.96002 -23.58395 -23.40943 -22.34988 -21.79986 -20.32183 -20.26631 -19.19190 -18.84181 -18.52245 -17.69065 -17.25323 -17.15888 -16.88840 -16.66810 -16.62498 -16.33068 -16.21681 -16.17165 -16.10633 -15.80973 -15.45537 -15.29490 -14.98072 -14.54318 -14.48817 -14.42719 -14.32234 -14.23251 -13.97389 -13.79566 -13.62215 -13.50452 -13.33399 -13.24813 -13.14916 -13.07806 -12.67265 -12.54051 -12.41727 -12.29027 -12.10862 -12.07866 -11.64829 -11.57657 -11.51748 -11.25390 -11.13040 -10.87321 -10.64427 -10.18029 -10.13677 -9.74158 -9.54169 -9.15219 -9.02170 -5.08540 -0.88347 0.25801 0.33187 0.35019 0.39925 0.48221 0.77234 1.20797 1.52720 1.56592 1.84774 1.96124 2.01758 2.35489 2.74020 2.83559 3.30866 3.41977 3.46464 3.65163 3.68147 3.71600 3.75193 3.77033 3.85547 3.88175 3.97140 4.09650 4.19282 4.21090 4.28115 4.32435 4.34770 4.39256 4.42023 4.52603 4.54668 4.56493 4.61803 4.63698 4.67930 4.71206 4.79357 4.85455 4.93180 4.97633 5.02462 5.02801 5.10502 5.11497 5.15053 5.23928 5.29882 5.33305 5.34734 5.48559 5.49265 5.53481 5.70632 5.74518 5.82884 6.37509 6.43887 6.44750 7.12185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.165 4.165 5 C -0.033 4.033 6 C -0.067 4.067 7 H 0.111 0.889 8 C -0.122 4.122 9 C 0.115 3.885 10 H 0.089 0.911 11 N -0.694 5.694 12 C 0.560 3.440 13 O -0.579 6.579 14 C -0.151 4.151 15 C -0.068 4.068 16 C -0.109 4.109 17 C 0.006 3.994 18 C -0.160 4.160 19 C -0.116 4.116 20 C -0.110 4.110 21 C -0.218 4.218 22 C -0.033 4.033 23 O -0.539 6.539 24 Si 0.709 3.291 25 S 0.123 5.877 26 C -0.128 4.128 27 C -0.063 4.063 28 C -0.141 4.141 29 C -0.161 4.161 30 C -0.084 4.084 31 C -0.222 4.222 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.415 0.585 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.154 0.846 43 H 0.140 0.860 44 H 0.388 0.612 45 H -0.267 1.267 46 H -0.272 1.272 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.100 0.900 50 H 0.067 0.933 51 H 0.139 0.861 52 H 0.142 0.858 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -3.242 -2.967 5.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.183 4.183 5 C -0.034 4.034 6 C -0.086 4.086 7 H 0.129 0.871 8 C -0.160 4.160 9 C 0.009 3.991 10 H 0.107 0.893 11 N -0.346 5.346 12 C 0.349 3.651 13 O -0.460 6.460 14 C -0.154 4.154 15 C -0.086 4.086 16 C -0.128 4.128 17 C 0.004 3.996 18 C -0.276 4.276 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.336 4.336 22 C -0.146 4.146 23 O -0.347 6.347 24 Si 0.611 3.389 25 S 0.390 5.610 26 C -0.147 4.147 27 C -0.082 4.082 28 C -0.179 4.179 29 C -0.179 4.179 30 C -0.102 4.102 31 C -0.241 4.241 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.151 0.849 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.254 0.746 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.237 0.763 45 H -0.192 1.192 46 H -0.197 1.197 47 H 0.152 0.848 48 H 0.147 0.853 49 H 0.118 0.882 50 H 0.086 0.914 51 H 0.157 0.843 52 H 0.160 0.840 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.592 -1.082 -2.307 3.005 hybrid contribution -1.246 -2.026 0.760 2.497 sum -2.839 -3.108 -1.547 4.485 Atomic orbital electron populations 1.23290 0.76687 1.05365 1.02089 1.86038 1.23245 1.27298 1.88795 1.19299 0.92882 0.84613 0.96805 1.20510 0.91426 0.98886 1.07505 1.19611 0.95528 0.91828 0.96386 1.21626 0.89908 0.99549 0.97475 0.87054 1.23372 0.96782 0.99876 0.95990 1.21879 0.83284 0.96449 0.97464 0.89302 1.45468 1.07883 1.12350 1.68863 1.18468 0.84024 0.86792 0.75820 1.90786 1.86262 1.16503 1.52414 1.20008 0.93502 0.94873 1.07018 1.21255 0.99796 0.91510 0.96058 1.21190 0.90661 1.01751 0.99241 1.18467 0.91532 0.92331 0.97237 1.23174 0.96571 0.97231 1.10671 1.20637 0.99115 0.93293 1.01632 1.20185 0.91927 1.01583 1.00351 1.25095 1.01129 0.96341 1.11034 1.24453 0.93183 1.03160 0.93763 1.86600 1.82473 1.42924 1.22722 0.94482 0.78768 0.78194 0.87432 1.84213 1.01096 1.08879 1.66815 1.21031 0.98852 0.93125 1.01705 1.20947 0.91418 1.00732 0.95107 1.23559 0.97822 0.98856 0.97697 1.21175 0.93799 0.98817 1.04092 1.21236 0.95024 0.97535 0.96437 1.21486 1.00915 0.92450 1.09236 0.86684 0.91838 0.91935 0.84881 0.89187 0.87856 0.74625 0.82058 0.82232 0.81646 0.82835 0.84292 0.76286 1.19215 1.19730 0.84807 0.85266 0.88202 0.91397 0.84339 0.84015 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.67 10.50 -92.43 -0.97 -2.64 16 3 C 0.11 0.51 6.69 22.51 0.15 0.66 16 4 C -0.16 -0.48 9.65 22.37 0.22 -0.27 16 5 C -0.03 0.00 5.29 -19.88 -0.11 -0.11 16 6 C -0.07 0.27 3.86 -11.01 -0.04 0.23 16 7 H 0.11 -0.73 8.09 -2.39 -0.02 -0.75 16 8 C -0.12 0.62 7.29 31.12 0.23 0.85 16 9 C 0.11 -0.16 4.32 45.52 0.20 0.04 16 10 H 0.09 0.27 7.46 -2.39 -0.02 0.25 16 11 N -0.69 1.31 5.21 -443.16 -2.31 -1.00 16 12 C 0.56 2.84 7.76 86.70 0.67 3.52 16 13 O -0.58 -8.04 15.93 -4.03 -0.06 -8.10 16 14 C -0.15 -0.30 5.88 -20.05 -0.12 -0.42 16 15 C -0.07 0.29 9.48 22.26 0.21 0.50 16 16 C -0.11 0.43 9.48 22.26 0.21 0.64 16 17 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 18 C -0.16 0.03 6.37 23.98 0.15 0.18 16 19 C -0.12 0.28 9.64 21.42 0.21 0.49 16 20 C -0.11 0.17 10.00 21.15 0.21 0.39 16 21 C -0.22 0.21 5.73 24.67 0.14 0.35 16 22 C -0.03 0.06 2.96 71.24 0.21 0.27 16 23 O -0.54 -0.51 12.86 -148.98 -1.92 -2.42 16 24 Si 0.71 -0.92 30.96 68.60 2.12 1.20 16 25 S 0.12 -0.04 19.46 -56.49 -1.10 -1.14 16 26 C -0.13 -0.22 9.54 22.26 0.21 -0.01 16 27 C -0.06 -0.24 9.53 22.26 0.21 -0.03 16 28 C -0.14 0.30 7.25 31.12 0.23 0.52 16 29 C -0.16 0.03 8.61 22.28 0.19 0.22 16 30 C -0.08 -0.03 10.04 22.25 0.22 0.19 16 31 C -0.22 -0.46 9.04 22.37 0.20 -0.25 16 32 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 34 H 0.06 -0.25 7.66 -2.38 -0.02 -0.26 16 35 H 0.13 0.13 8.05 -2.91 -0.02 0.10 16 36 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.10 -0.53 7.72 -2.39 -0.02 -0.55 16 38 H 0.42 -3.44 6.71 -92.71 -0.62 -4.06 16 39 H 0.16 -1.85 6.38 -2.91 -0.02 -1.87 16 40 H 0.16 -1.50 6.74 -2.91 -0.02 -1.52 16 41 H 0.17 -1.22 6.88 -2.91 -0.02 -1.24 16 42 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 43 H 0.14 -0.56 7.96 -2.38 -0.02 -0.58 16 44 H 0.39 -1.61 8.70 -74.06 -0.64 -2.26 16 45 H -0.27 -0.77 7.11 99.48 0.71 -0.07 16 46 H -0.27 -1.31 7.11 99.48 0.71 -0.60 16 47 H 0.13 -0.01 7.26 -2.91 -0.02 -0.03 16 48 H 0.13 0.70 7.64 -2.91 -0.02 0.68 16 49 H 0.10 -0.25 6.31 -2.39 -0.02 -0.27 16 50 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 51 H 0.14 -0.48 6.65 -2.91 -0.02 -0.50 16 52 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 53 H 0.14 -0.20 6.30 -2.91 -0.02 -0.22 16 Total: 0.00 -22.01 447.95 0.32 -21.69 By element: Atomic # 1 Polarization: -16.25 SS G_CDS: -0.25 Total: -16.50 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.80 Total: 8.91 kcal Atomic # 7 Polarization: 1.31 SS G_CDS: -2.31 Total: -1.00 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -2.95 Total: -13.16 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.12 Total: 1.20 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.10 Total: -1.14 kcal Total: -22.01 0.32 -21.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13308390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.735 kcal (2) G-P(sol) polarization free energy of solvation -22.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds