Wall clock time and date at job start Sat Mar 6 2021 14:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99981 * 2 1 4 4 C 1.38704 * 120.05563 * 180.30250 * 3 2 1 5 5 C 1.38169 * 119.94153 * 180.25534 * 4 3 2 6 6 C 1.50703 * 119.97186 * 179.74319 * 5 4 3 7 7 H 1.08999 * 112.84799 * 10.92080 * 6 5 4 8 8 C 1.53785 * 113.69205 * 142.18382 * 6 5 4 9 9 C 1.53781 * 87.07797 * 139.99227 * 8 6 5 10 10 H 1.08997 * 113.68990 * 220.00671 * 9 8 6 11 11 N 1.46501 * 113.61210 * 89.12152 * 9 8 6 12 12 C 1.34777 * 120.00132 * 107.50125 * 11 9 8 13 13 O 1.21584 * 120.00139 * 359.97438 * 12 11 9 14 14 C 1.47531 * 119.99838 * 180.02562 * 12 11 9 15 15 C 1.40145 * 120.18870 * 180.02562 * 14 12 11 16 16 O 1.35648 * 120.15291 * 359.97438 * 15 14 12 17 17 C 1.38713 * 119.69662 * 179.70123 * 15 14 12 18 18 C 1.38059 * 120.08548 * 0.53072 * 17 15 14 19 19 C 1.50699 * 119.80553 * 179.76523 * 18 17 15 20 20 O 1.42901 * 109.46830 * 299.72482 * 19 18 17 21 21 Si 1.86298 * 109.46950 * 179.72919 * 19 18 17 22 22 C 1.38552 * 120.38803 * 359.49387 * 18 17 15 23 23 C 1.37789 * 120.30108 * 0.22654 * 22 18 17 24 24 C 1.53774 * 113.61444 * 239.72420 * 6 5 4 25 25 C 1.38246 * 120.05625 * 359.46518 * 5 4 3 26 26 C 1.38278 * 120.11060 * 0.23606 * 25 5 4 27 27 C 1.38126 * 120.05714 * 0.04131 * 26 25 5 28 28 H 1.09003 * 109.46836 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47181 * 299.99716 * 1 2 3 30 30 H 1.08992 * 109.47369 * 59.99925 * 1 2 3 31 31 H 1.08000 * 120.03059 * 359.97438 * 4 3 2 32 32 H 1.09003 * 113.60682 * 25.44697 * 8 6 5 33 33 H 1.08996 * 113.61445 * 254.54419 * 8 6 5 34 34 H 0.97001 * 119.99836 * 287.49598 * 11 9 8 35 35 H 0.96697 * 114.00310 * 89.99661 * 16 15 14 36 36 H 1.07990 * 119.95681 * 180.29450 * 17 15 14 37 37 H 1.08991 * 109.47351 * 59.72629 * 19 18 17 38 38 H 0.96708 * 114.00246 * 299.99864 * 20 19 18 39 39 H 1.48506 * 109.99834 * 180.02562 * 21 19 18 40 40 H 1.48502 * 110.00011 * 301.31529 * 21 19 18 41 41 H 1.07999 * 119.85109 * 180.25745 * 22 18 17 42 42 H 1.08001 * 120.04174 * 180.02562 * 23 22 18 43 43 H 1.08997 * 113.61545 * 105.38828 * 24 6 5 44 44 H 1.09000 * 113.69161 * 334.48870 * 24 6 5 45 45 H 1.08005 * 119.94287 * 180.25575 * 25 5 4 46 46 H 1.08003 * 119.97143 * 180.02562 * 26 25 5 47 47 H 1.08009 * 120.02657 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 -0.0063 5 6 4.0559 2.5171 -0.0010 6 6 5.5608 2.5983 -0.0020 7 1 6.0363 1.6371 -0.1974 8 6 6.1171 3.7465 -0.8604 9 6 7.1529 3.9724 0.2535 10 1 7.3510 5.0241 0.4607 11 7 8.3771 3.1856 0.0848 12 6 9.5222 3.7919 -0.2863 13 8 9.5391 4.9919 -0.4815 14 6 10.7548 2.9994 -0.4567 15 6 11.9478 3.6258 -0.8419 16 8 11.9748 4.9643 -1.0605 17 6 13.1022 2.8718 -0.9931 18 6 13.0721 1.5088 -0.7754 19 6 14.3287 0.6949 -0.9466 20 8 14.7958 0.8171 -2.2916 21 14 13.9651 -1.0942 -0.5757 22 6 11.8945 0.8857 -0.3950 23 6 10.7397 1.6202 -0.2346 24 6 6.1388 3.3349 1.2178 25 6 3.3018 3.6758 -0.0005 26 6 1.9209 3.6048 -0.0004 27 6 1.2914 2.3753 0.0000 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0206 0.3800 -0.0109 32 1 5.4209 4.5761 -0.9840 33 1 6.5541 3.4153 -1.8025 34 1 8.3636 2.2282 0.2403 35 1 12.1861 5.4870 -0.2749 36 1 14.0249 3.3510 -1.2851 37 1 15.0940 1.0597 -0.2617 38 1 14.1643 0.5104 -2.9567 39 1 15.1968 -1.9075 -0.7404 40 1 13.4484 -1.2309 0.8098 41 1 11.8817 -0.1804 -0.2230 42 1 9.8242 1.1302 0.0624 43 1 6.5934 2.6714 1.9535 44 1 5.4495 4.0521 1.6634 45 1 3.7922 4.6382 -0.0005 46 1 1.3340 4.5114 -0.0005 47 1 0.2127 2.3203 -0.0004 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13422076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:40:07 Heat of formation + Delta-G solvation = -58.067809 kcal Electronic energy + Delta-G solvation = -30282.991487 eV Core-core repulsion = 25978.012101 eV Total energy + Delta-G solvation = -4304.979386 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.89007 -41.28378 -40.48963 -39.39830 -38.43495 -37.78842 -37.13686 -34.63463 -32.75916 -31.95814 -31.10661 -30.86065 -28.23642 -27.63867 -26.67381 -25.91948 -23.88201 -23.74185 -23.48199 -22.32008 -21.73176 -20.31771 -19.38558 -18.89844 -18.56148 -18.18694 -17.29856 -17.20026 -16.93505 -16.69726 -16.65765 -16.26099 -16.21122 -16.15850 -15.95121 -15.57254 -15.31585 -15.17377 -14.76916 -14.48274 -14.40157 -14.23919 -13.96705 -13.81650 -13.48768 -13.32851 -13.22292 -13.15498 -12.85336 -12.66755 -12.29747 -12.28341 -12.16328 -12.09528 -11.68857 -11.61821 -11.56449 -11.24147 -10.95823 -10.51859 -10.20639 -9.99967 -9.76443 -9.72709 -9.14304 -4.96840 -0.41385 0.15225 0.33896 0.49049 1.29658 1.64261 1.72038 1.99986 2.01887 2.36414 2.56947 2.74980 3.13261 3.43713 3.47098 3.54958 3.68132 3.71414 3.75769 3.80372 3.89024 3.98181 4.08345 4.11128 4.20060 4.27720 4.29150 4.35612 4.40083 4.40129 4.55693 4.58428 4.63651 4.68150 4.72034 4.77061 4.79868 4.85994 4.98587 5.03198 5.03990 5.11237 5.13324 5.18550 5.24794 5.35537 5.49592 5.54774 5.60385 5.71936 5.83556 6.44799 6.47475 6.70955 6.73506 7.16901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.034 4.034 6 C -0.066 4.066 7 H 0.113 0.887 8 C -0.142 4.142 9 C 0.117 3.883 10 H 0.087 0.913 11 N -0.695 5.695 12 C 0.558 3.442 13 O -0.563 6.563 14 C -0.180 4.180 15 C 0.153 3.847 16 O -0.498 6.498 17 C -0.141 4.141 18 C -0.072 4.072 19 C -0.086 4.086 20 O -0.556 6.556 21 Si 0.788 3.212 22 C -0.132 4.132 23 C -0.052 4.052 24 C -0.122 4.122 25 C -0.161 4.161 26 C -0.085 4.085 27 C -0.222 4.222 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.415 0.585 35 H 0.407 0.593 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.397 0.603 39 H -0.304 1.304 40 H -0.273 1.273 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 -5.546 2.111 7.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.064 3.936 4 C -0.182 4.182 5 C -0.034 4.034 6 C -0.084 4.084 7 H 0.131 0.869 8 C -0.180 4.180 9 C 0.011 3.989 10 H 0.105 0.895 11 N -0.348 5.348 12 C 0.347 3.653 13 O -0.443 6.443 14 C -0.184 4.184 15 C 0.107 3.893 16 O -0.311 6.311 17 C -0.159 4.159 18 C -0.073 4.073 19 C -0.195 4.195 20 O -0.364 6.364 21 Si 0.693 3.307 22 C -0.149 4.149 23 C -0.071 4.071 24 C -0.160 4.160 25 C -0.179 4.179 26 C -0.103 4.103 27 C -0.241 4.241 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.253 0.747 35 H 0.266 0.734 36 H 0.151 0.849 37 H 0.128 0.872 38 H 0.247 0.753 39 H -0.233 1.233 40 H -0.199 1.199 41 H 0.181 0.819 42 H 0.186 0.814 43 H 0.109 0.891 44 H 0.120 0.880 45 H 0.155 0.845 46 H 0.159 0.841 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.692 -5.461 2.216 6.955 hybrid contribution 0.130 0.827 0.548 1.001 sum -3.562 -4.634 2.764 6.466 Atomic orbital electron populations 1.23287 0.76714 1.05371 1.02057 1.86040 1.23211 1.27257 1.88786 1.19297 0.92898 0.84598 0.96781 1.20517 0.91412 0.98900 1.07419 1.19620 0.95565 0.91825 0.96386 1.21620 0.89850 0.99579 0.97361 0.86867 1.23558 0.97844 0.98881 0.97747 1.21844 0.83308 0.96348 0.97391 0.89489 1.45456 1.07814 1.12289 1.69236 1.18306 0.83812 0.86910 0.76287 1.90810 1.85982 1.16203 1.51262 1.20434 0.93723 0.95704 1.08508 1.18758 0.91620 0.84528 0.94443 1.84718 1.93028 1.14216 1.39171 1.21332 0.97821 0.94359 1.02430 1.20580 0.96280 0.93626 0.96833 1.25438 0.95218 1.11122 0.87673 1.86497 1.46515 1.88495 1.14924 0.93583 0.82285 0.72243 0.82573 1.21245 0.91449 1.01164 1.01044 1.21503 0.99999 0.90729 0.94832 1.23364 0.96755 0.99881 0.96005 1.21171 0.93805 0.98821 1.04134 1.21231 0.95027 0.97542 0.96496 1.21485 1.00906 0.92460 1.09248 0.86655 0.91887 0.91959 0.84719 0.88385 0.91450 0.74682 0.73354 0.84915 0.87210 0.75317 1.23254 1.19941 0.81940 0.81352 0.89126 0.87988 0.84453 0.84082 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.53 10.50 -92.43 -0.97 -2.50 16 3 C 0.11 0.47 6.69 22.50 0.15 0.62 16 4 C -0.16 -0.41 9.65 22.36 0.22 -0.20 16 5 C -0.03 0.01 5.29 -19.88 -0.11 -0.10 16 6 C -0.07 0.29 3.85 -11.01 -0.04 0.25 16 7 H 0.11 -0.82 8.09 -2.39 -0.02 -0.84 16 8 C -0.14 0.29 7.26 31.12 0.23 0.52 16 9 C 0.12 -0.18 4.32 45.52 0.20 0.02 16 10 H 0.09 0.26 7.46 -2.39 -0.02 0.25 16 11 N -0.70 1.59 5.21 -443.21 -2.31 -0.72 16 12 C 0.56 2.82 7.76 86.69 0.67 3.50 16 13 O -0.56 -7.83 14.76 16.94 0.25 -7.58 16 14 C -0.18 -0.34 5.89 -20.01 -0.12 -0.46 16 15 C 0.15 0.74 6.72 22.85 0.15 0.90 16 16 O -0.50 -4.00 11.58 -68.71 -0.80 -4.79 16 17 C -0.14 -0.29 9.53 22.34 0.21 -0.08 16 18 C -0.07 0.17 5.39 -19.83 -0.11 0.06 16 19 C -0.09 0.25 2.81 71.24 0.20 0.45 16 20 O -0.56 0.54 12.77 -148.98 -1.90 -1.37 16 21 Si 0.79 -4.62 29.77 68.60 2.04 -2.58 16 22 C -0.13 0.82 8.64 22.24 0.19 1.01 16 23 C -0.05 0.29 9.53 22.52 0.21 0.51 16 24 C -0.12 0.66 7.29 31.12 0.23 0.89 16 25 C -0.16 0.03 8.61 22.28 0.19 0.23 16 26 C -0.08 -0.03 10.04 22.25 0.22 0.19 16 27 C -0.22 -0.42 9.04 22.37 0.20 -0.22 16 28 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.06 -0.27 7.66 -2.39 -0.02 -0.29 16 30 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 31 H 0.13 0.04 8.05 -2.91 -0.02 0.01 16 32 H 0.10 -0.22 6.32 -2.39 -0.02 -0.23 16 33 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.41 -3.75 6.73 -92.71 -0.62 -4.37 16 35 H 0.41 0.44 9.06 -74.06 -0.67 -0.23 16 36 H 0.13 0.37 8.06 -2.92 -0.02 0.34 16 37 H 0.11 -0.19 7.96 -2.39 -0.02 -0.21 16 38 H 0.40 -3.58 8.70 -74.05 -0.64 -4.22 16 39 H -0.30 -0.87 7.11 99.48 0.71 -0.16 16 40 H -0.27 0.76 7.11 99.48 0.71 1.47 16 41 H 0.16 -1.93 4.85 -2.91 -0.01 -1.94 16 42 H 0.17 -2.24 6.40 -2.91 -0.02 -2.26 16 43 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.10 -0.54 7.73 -2.39 -0.02 -0.55 16 45 H 0.14 -0.46 6.66 -2.91 -0.02 -0.48 16 46 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 47 H 0.14 -0.22 6.30 -2.91 -0.02 -0.23 16 Total: 0.00 -26.08 387.11 -0.52 -26.60 By element: Atomic # 1 Polarization: -15.35 SS G_CDS: -0.85 Total: -16.21 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 4.02 Total: 9.15 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -2.31 Total: -0.72 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -3.42 Total: -16.24 kcal Atomic # 14 Polarization: -4.62 SS G_CDS: 2.04 Total: -2.58 kcal Total: -26.08 -0.52 -26.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13422076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.471 kcal (2) G-P(sol) polarization free energy of solvation -26.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds