Wall clock time and date at job start Sat Mar 6 2021 14:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 117.00071 * 2 1 4 4 C 1.38709 * 120.05536 * 180.25593 * 3 2 1 5 5 C 1.38166 * 119.94424 * 180.25622 * 4 3 2 6 6 C 1.50700 * 119.97134 * 179.74758 * 5 4 3 7 7 H 1.08993 * 112.91004 * 10.97145 * 6 5 4 8 8 C 1.53962 * 113.66521 * 142.27555 * 6 5 4 9 9 C 1.53782 * 87.11063 * 139.88647 * 8 6 5 10 10 H 1.09001 * 113.61250 * 220.08565 * 9 8 6 11 11 N 1.46496 * 113.68971 * 89.19569 * 9 8 6 12 12 C 1.34784 * 119.99758 * 107.45966 * 11 9 8 13 13 O 1.21606 * 119.99904 * 0.02562 * 12 11 9 14 14 C 1.47382 * 119.99930 * 179.97438 * 12 11 9 15 15 C 1.36413 * 127.19280 * 0.03294 * 14 12 11 16 16 O 1.33651 * 108.40001 * 179.97438 * 15 14 12 17 17 C 1.34212 * 110.90370 * 0.02562 * 16 15 14 18 18 C 1.50708 * 125.43715 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.47365 * 119.97108 * 18 17 16 20 20 Si 1.86297 * 109.46785 * 359.97000 * 18 17 16 21 21 C 1.34176 * 109.12957 * 359.70365 * 17 16 15 22 22 C 1.53781 * 87.08260 * 334.63747 * 9 8 6 23 23 C 1.38241 * 120.05103 * 359.46839 * 5 4 3 24 24 C 1.38286 * 120.11855 * 0.27688 * 23 5 4 25 25 C 1.38130 * 120.05138 * 359.97438 * 24 23 5 26 26 H 1.09000 * 109.47039 * 59.99590 * 1 2 3 27 27 H 1.09004 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46829 * 299.99692 * 1 2 3 29 29 H 1.07999 * 120.02762 * 359.97438 * 4 3 2 30 30 H 1.08997 * 113.53543 * 25.33321 * 8 6 5 31 31 H 1.08998 * 113.73879 * 254.46919 * 8 6 5 32 32 H 0.97001 * 120.00688 * 287.46664 * 11 9 8 33 33 H 1.08007 * 125.79899 * 359.97438 * 15 14 12 34 34 H 1.08999 * 109.46799 * 239.97361 * 18 17 16 35 35 H 0.96693 * 113.99859 * 180.02562 * 19 18 17 36 36 H 1.48497 * 110.00018 * 60.00456 * 20 18 17 37 37 H 1.48500 * 109.99836 * 181.32208 * 20 18 17 38 38 H 1.08005 * 127.02968 * 180.27459 * 21 17 16 39 39 H 1.09002 * 113.61445 * 139.98212 * 22 9 8 40 40 H 1.09002 * 113.61408 * 270.79943 * 22 9 8 41 41 H 1.08003 * 119.94147 * 180.25283 * 23 5 4 42 42 H 1.07999 * 119.98035 * 179.97438 * 24 23 5 43 43 H 1.07995 * 120.02525 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 -0.0054 5 6 4.0560 2.5171 0.0000 6 6 5.5608 2.5981 -0.0001 7 1 6.0374 1.6376 -0.1956 8 6 6.1177 3.7489 -0.8579 9 6 7.1518 3.9762 0.2575 10 1 7.3459 5.0285 0.4651 11 7 8.3788 3.1934 0.0910 12 6 9.5225 3.8037 -0.2782 13 8 9.5359 5.0040 -0.4725 14 6 10.7571 3.0163 -0.4452 15 6 10.9086 1.6724 -0.2667 16 8 12.1821 1.3543 -0.5183 17 6 12.8892 2.4428 -0.8594 18 6 14.3547 2.4582 -1.2104 19 8 14.5206 2.9499 -2.5418 20 14 15.0385 0.7290 -1.0972 21 6 12.0815 3.5141 -0.8450 22 6 6.1381 3.3352 1.2200 23 6 3.3019 3.6757 -0.0004 24 6 1.9209 3.6048 -0.0004 25 6 1.2914 2.3753 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0206 0.3799 -0.0091 30 1 5.4197 4.5769 -0.9815 31 1 6.5568 3.4212 -1.8002 32 1 8.3683 2.2360 0.2462 33 1 10.1315 0.9827 0.0280 34 1 14.8881 3.1061 -0.5147 35 1 15.4411 2.9870 -2.8355 36 1 14.3196 -0.1642 -2.0409 37 1 16.4902 0.7354 -1.4099 38 1 12.3498 4.5342 -1.0772 39 1 6.5934 2.6721 1.9555 40 1 5.4465 4.0503 1.6655 41 1 3.7923 4.6380 -0.0003 42 1 1.3340 4.5114 -0.0003 43 1 0.2128 2.3204 -0.0001 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13456056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:40:27 Heat of formation + Delta-G solvation = -25.702548 kcal Electronic energy + Delta-G solvation = -26637.049082 eV Core-core repulsion = 22617.236919 eV Total energy + Delta-G solvation = -4019.812163 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.71833 -41.62962 -40.80110 -39.55670 -38.08873 -37.85717 -34.76640 -33.80192 -32.26441 -31.76573 -30.84862 -28.24022 -26.90412 -26.67797 -26.16590 -24.71588 -23.56037 -22.31016 -22.25583 -21.04439 -20.30505 -18.95544 -18.74044 -18.72325 -17.45482 -17.24292 -17.21106 -16.93928 -16.85052 -16.66741 -16.15781 -16.02755 -15.77542 -15.71415 -15.33119 -14.83978 -14.43446 -14.29375 -14.20398 -14.05523 -14.00198 -13.71014 -13.47766 -13.25552 -13.19206 -12.82024 -12.67477 -12.29308 -12.13841 -12.11211 -11.65584 -11.57725 -11.27968 -11.23023 -10.97762 -10.66884 -10.16288 -9.76141 -9.73571 -9.15257 -4.91924 0.25191 0.33105 0.48118 0.79211 1.19109 1.46057 1.74255 1.96938 1.99893 2.23053 2.35486 2.73980 3.34336 3.46903 3.49763 3.56371 3.70644 3.74040 3.88083 3.94482 3.97337 4.09983 4.19127 4.26994 4.28170 4.34732 4.39069 4.40265 4.52343 4.55225 4.62714 4.68601 4.71168 4.79224 4.86429 4.90072 4.97705 5.02767 5.10153 5.13639 5.15184 5.34630 5.48305 5.53273 5.70823 5.82682 5.84923 6.43872 6.46286 6.50561 7.13966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.034 4.034 6 C -0.066 4.066 7 H 0.114 0.886 8 C -0.143 4.143 9 C 0.116 3.884 10 H 0.086 0.914 11 N -0.692 5.692 12 C 0.591 3.409 13 O -0.585 6.585 14 C -0.269 4.269 15 C 0.067 3.933 16 O -0.166 6.166 17 C -0.016 4.016 18 C -0.051 4.051 19 O -0.558 6.558 20 Si 0.787 3.213 21 C -0.151 4.151 22 C -0.120 4.120 23 C -0.161 4.161 24 C -0.085 4.085 25 C -0.222 4.222 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.417 0.583 33 H 0.266 0.734 34 H 0.122 0.878 35 H 0.406 0.594 36 H -0.305 1.305 37 H -0.268 1.268 38 H 0.145 0.855 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 -4.674 4.318 6.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.064 3.936 4 C -0.183 4.183 5 C -0.034 4.034 6 C -0.084 4.084 7 H 0.132 0.868 8 C -0.181 4.181 9 C 0.010 3.990 10 H 0.105 0.895 11 N -0.343 5.343 12 C 0.380 3.620 13 O -0.466 6.466 14 C -0.273 4.273 15 C -0.004 4.004 16 O -0.062 6.062 17 C -0.064 4.064 18 C -0.158 4.158 19 O -0.370 6.370 20 Si 0.690 3.310 21 C -0.171 4.171 22 C -0.158 4.158 23 C -0.179 4.179 24 C -0.103 4.103 25 C -0.241 4.241 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.255 0.745 33 H 0.281 0.719 34 H 0.139 0.861 35 H 0.258 0.742 36 H -0.233 1.233 37 H -0.194 1.194 38 H 0.162 0.838 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.799 -4.901 3.816 6.262 hybrid contribution -0.159 0.876 -1.173 1.473 sum -0.957 -4.025 2.642 4.909 Atomic orbital electron populations 1.23289 0.76698 1.05377 1.02069 1.86039 1.23233 1.27279 1.88793 1.19299 0.92897 0.84599 0.96794 1.20514 0.91417 0.98893 1.07438 1.19616 0.95571 0.91824 0.96401 1.21653 0.89848 0.99536 0.97388 0.86814 1.23601 0.97865 0.98956 0.97709 1.21858 0.83148 0.96437 0.97537 0.89541 1.45322 1.07531 1.12253 1.69243 1.17467 0.82883 0.86217 0.75453 1.90783 1.86256 1.16724 1.52793 1.21455 0.94942 0.95205 1.15737 1.25343 0.84102 0.95019 0.95895 1.83690 1.20529 1.35236 1.66725 1.21348 0.94775 0.84003 1.06260 1.24180 0.90597 1.14014 0.87053 1.86516 1.34438 1.86690 1.29374 0.93559 0.76408 0.71885 0.89154 1.22539 0.91379 1.00181 1.03020 1.23359 0.96627 0.99842 0.95975 1.21175 0.93813 0.98827 1.04118 1.21236 0.95021 0.97544 0.96470 1.21485 1.00914 0.92454 1.09237 0.91978 0.86654 0.91839 0.84762 0.88344 0.91541 0.74543 0.71868 0.86069 0.74198 1.23251 1.19386 0.83751 0.88856 0.87939 0.84426 0.84047 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.68 10.50 -92.48 -0.97 -2.65 16 3 C 0.11 0.52 6.69 22.51 0.15 0.67 16 4 C -0.16 -0.48 9.65 22.37 0.22 -0.26 16 5 C -0.03 -0.01 5.29 -19.88 -0.11 -0.11 16 6 C -0.07 0.27 3.87 -10.95 -0.04 0.23 16 7 H 0.11 -0.80 8.09 -2.39 -0.02 -0.82 16 8 C -0.14 0.22 7.26 31.18 0.23 0.44 16 9 C 0.12 -0.11 4.32 45.52 0.20 0.09 16 10 H 0.09 0.34 7.46 -2.39 -0.02 0.32 16 11 N -0.69 1.22 5.26 -443.34 -2.33 -1.12 16 12 C 0.59 4.05 7.81 86.65 0.68 4.73 16 13 O -0.58 -9.93 16.58 -4.05 -0.07 -10.00 16 14 C -0.27 -1.08 6.31 -18.99 -0.12 -1.20 16 15 C 0.07 -0.27 11.61 67.39 0.78 0.52 16 16 O -0.17 -0.01 8.89 4.51 0.04 0.03 16 17 C -0.02 -0.05 6.24 24.76 0.15 0.10 16 18 C -0.05 0.05 2.97 71.24 0.21 0.26 16 19 O -0.56 -1.10 12.84 -148.98 -1.91 -3.01 16 20 Si 0.79 -2.42 32.08 68.60 2.20 -0.22 16 21 C -0.15 -1.11 10.87 23.65 0.26 -0.86 16 22 C -0.12 0.63 7.29 31.12 0.23 0.86 16 23 C -0.16 -0.02 8.61 22.28 0.19 0.17 16 24 C -0.08 -0.06 10.04 22.26 0.22 0.17 16 25 C -0.22 -0.50 9.04 22.37 0.20 -0.30 16 26 H 0.06 -0.23 7.66 -2.39 -0.02 -0.25 16 27 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.06 -0.26 7.66 -2.39 -0.02 -0.27 16 29 H 0.13 0.10 8.05 -2.91 -0.02 0.08 16 30 H 0.10 -0.17 6.31 -2.39 -0.02 -0.19 16 31 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.42 -4.02 7.68 -92.71 -0.71 -4.73 16 33 H 0.27 -4.21 7.47 -2.91 -0.02 -4.23 16 34 H 0.12 -0.75 7.96 -2.39 -0.02 -0.77 16 35 H 0.41 -2.98 8.74 -74.06 -0.65 -3.63 16 36 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 37 H -0.27 0.19 7.11 99.48 0.71 0.89 16 38 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.10 -0.52 7.72 -2.39 -0.02 -0.54 16 41 H 0.14 -0.41 6.65 -2.91 -0.02 -0.43 16 42 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 43 H 0.14 -0.17 6.30 -2.91 -0.02 -0.19 16 Total: 0.00 -28.01 366.35 1.26 -26.75 By element: Atomic # 1 Polarization: -16.09 SS G_CDS: -0.26 Total: -16.35 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 4.56 Total: 6.57 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -2.33 Total: -1.12 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -2.91 Total: -15.63 kcal Atomic # 14 Polarization: -2.42 SS G_CDS: 2.20 Total: -0.22 kcal Total: -28.01 1.26 -26.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13456056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.047 kcal (2) G-P(sol) polarization free energy of solvation -28.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds