Wall clock time and date at job start Sat Mar 6 2021 14:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99903 * 2 1 4 4 C 1.38721 * 120.05455 * 359.97438 * 3 2 1 5 5 C 1.38163 * 119.94041 * 180.02562 * 4 3 2 6 6 C 1.38244 * 120.05857 * 359.74353 * 5 4 3 7 7 C 1.38282 * 120.10972 * 0.51257 * 6 5 4 8 8 C 1.50707 * 119.97261 * 179.76432 * 7 6 5 9 9 H 1.08998 * 112.85084 * 168.52834 * 8 7 6 10 10 C 1.53780 * 113.61309 * 299.72936 * 8 7 6 11 11 C 1.53777 * 87.08203 * 139.97929 * 10 8 7 12 12 H 1.09001 * 113.61257 * 219.93444 * 11 10 8 13 13 N 1.46496 * 113.61861 * 89.11535 * 11 10 8 14 14 C 1.34777 * 120.00258 * 156.53091 * 13 11 10 15 15 O 1.21690 * 120.00222 * 359.97438 * 14 13 11 16 16 C 1.46676 * 119.99963 * 179.97438 * 14 13 11 17 17 C 1.37874 * 126.23351 * 180.02562 * 16 14 13 18 18 C 1.50695 * 126.45809 * 359.97213 * 17 16 14 19 19 C 1.39834 * 107.08673 * 180.02562 * 17 16 14 20 20 C 1.35453 * 107.86668 * 359.97438 * 19 17 16 21 21 C 1.50701 * 125.56879 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.47356 * 244.98052 * 21 20 19 23 23 Si 1.86295 * 109.46897 * 4.97704 * 21 20 19 24 24 N 1.35539 * 108.87124 * 359.73869 * 20 19 17 25 25 C 1.53775 * 87.17460 * 334.52027 * 11 10 8 26 26 C 1.38119 * 120.05791 * 359.48747 * 7 6 5 27 27 H 1.08997 * 109.46874 * 300.00118 * 1 2 3 28 28 H 1.09003 * 109.47041 * 60.00218 * 1 2 3 29 29 H 1.09006 * 109.46763 * 180.02562 * 1 2 3 30 30 H 1.07991 * 120.02536 * 0.04288 * 4 3 2 31 31 H 1.08004 * 119.96808 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.94300 * 180.25252 * 6 5 4 33 33 H 1.08996 * 113.61741 * 25.42362 * 10 8 7 34 34 H 1.09004 * 113.68547 * 254.53453 * 10 8 7 35 35 H 0.96999 * 119.99694 * 336.52481 * 13 11 10 36 36 H 1.09002 * 109.46894 * 90.00056 * 18 17 16 37 37 H 1.08998 * 109.47253 * 210.00404 * 18 17 16 38 38 H 1.09000 * 109.47392 * 330.00788 * 18 17 16 39 39 H 1.07999 * 126.06908 * 180.02562 * 19 17 16 40 40 H 1.08999 * 109.47125 * 124.98056 * 21 20 19 41 41 H 0.96705 * 113.99726 * 59.99703 * 22 21 20 42 42 H 1.48504 * 109.99984 * 58.68322 * 23 21 20 43 43 H 1.48496 * 110.00253 * 179.97438 * 23 21 20 44 44 H 0.96993 * 125.68415 * 180.28600 * 24 20 19 45 45 H 1.08999 * 113.61562 * 140.02002 * 25 11 10 46 46 H 1.09003 * 113.61852 * 270.93148 * 25 11 10 47 47 H 1.07998 * 120.03039 * 180.27477 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3750 -0.0005 5 6 1.9212 3.6048 -0.0011 6 6 3.3018 3.6758 0.0043 7 6 4.0561 2.5169 -0.0005 8 6 5.5610 2.5979 0.0000 9 1 6.0366 1.6369 0.1958 10 6 6.1386 3.3340 -1.2205 11 6 7.1516 3.9738 -0.2565 12 1 7.3484 5.0254 -0.4649 13 7 8.3766 3.1886 -0.0865 14 6 9.5134 3.7917 0.3142 15 8 9.5224 4.9885 0.5344 16 6 10.7398 3.0054 0.4850 17 6 11.9673 3.4872 0.8874 18 6 12.2992 4.9161 1.2325 19 6 12.8467 2.4003 0.9138 20 6 12.1564 1.2979 0.5360 21 6 12.7208 -0.0951 0.4266 22 8 12.6878 -0.5167 -0.9385 23 14 14.4813 -0.1014 1.0359 24 7 10.8733 1.6509 0.2786 25 6 6.1167 3.7500 0.8587 26 6 3.4315 1.2850 0.0000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2130 2.3200 -0.0003 31 1 1.3342 4.5114 -0.0011 32 1 3.7921 4.6382 0.0080 33 1 5.4477 4.0496 -1.6661 34 1 6.5944 2.6712 -1.9561 35 1 8.3696 2.2347 -0.2622 36 1 12.1278 5.0822 2.2961 37 1 13.3452 5.1130 0.9978 38 1 11.6644 5.5866 0.6532 39 1 13.8909 2.4338 1.1877 40 1 12.1243 -0.7775 1.0320 41 1 13.1988 0.0461 -1.5363 42 1 14.5328 0.3655 2.4447 43 1 15.0493 -1.4696 0.9338 44 1 10.1674 1.0498 -0.0062 45 1 6.5546 3.4218 1.8013 46 1 5.4198 4.5792 0.9805 47 1 4.0210 0.3801 0.0008 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_13940406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:40:30 Heat of formation + Delta-G solvation = -7.580685 kcal Electronic energy + Delta-G solvation = -28908.180977 eV Core-core repulsion = 24831.335680 eV Total energy + Delta-G solvation = -4076.845297 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.62874 -41.58799 -40.73249 -39.50814 -37.92725 -37.66099 -34.81230 -33.44598 -32.25867 -31.59720 -30.86643 -28.28609 -28.19928 -27.20642 -26.74451 -25.75740 -23.64412 -23.06304 -22.25823 -21.56908 -20.63912 -20.16252 -19.56431 -18.76961 -18.04676 -17.28993 -17.13579 -16.90090 -16.74170 -16.70270 -16.29653 -16.13199 -15.83005 -15.44390 -15.31556 -15.04431 -14.72252 -14.50390 -14.35710 -14.27969 -14.03718 -13.91080 -13.61839 -13.53640 -13.52021 -13.28249 -13.21595 -12.96289 -12.71210 -12.34331 -12.19655 -12.14968 -11.99733 -11.69803 -11.63286 -11.31348 -11.14714 -10.65463 -10.25507 -9.82393 -9.79040 -9.21398 -9.18430 -4.91555 0.27450 0.30065 0.44083 1.23173 1.52391 1.72506 1.89791 1.97881 2.21748 2.23021 2.31600 2.69791 3.39523 3.47430 3.57537 3.63603 3.67381 3.78885 3.83997 3.90915 4.04178 4.14212 4.15070 4.22042 4.24115 4.31733 4.34652 4.41814 4.50427 4.57060 4.61556 4.67750 4.72209 4.73761 4.78698 4.82261 4.91078 4.91929 4.96220 5.04824 5.07809 5.17573 5.30475 5.34595 5.43704 5.48382 5.62919 5.66053 5.78780 5.85562 6.28881 6.40006 6.45433 6.68168 7.04751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.221 4.221 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.035 4.035 8 C -0.068 4.068 9 H 0.105 0.895 10 C -0.122 4.122 11 C 0.118 3.882 12 H 0.093 0.907 13 N -0.702 5.702 14 C 0.590 3.410 15 O -0.559 6.559 16 C -0.071 4.071 17 C -0.084 4.084 18 C -0.091 4.091 19 C -0.206 4.206 20 C 0.033 3.967 21 C -0.055 4.055 22 O -0.554 6.554 23 Si 0.804 3.196 24 N -0.515 5.515 25 C -0.140 4.140 26 C -0.167 4.167 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.169 0.831 40 H 0.115 0.885 41 H 0.399 0.601 42 H -0.287 1.287 43 H -0.295 1.295 44 H 0.426 0.574 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 -1.529 -2.503 2.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.240 4.240 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.035 4.035 8 C -0.086 4.086 9 H 0.123 0.877 10 C -0.159 4.159 11 C 0.013 3.987 12 H 0.112 0.888 13 N -0.353 5.353 14 C 0.379 3.621 15 O -0.438 6.438 16 C -0.185 4.185 17 C -0.093 4.093 18 C -0.148 4.148 19 C -0.230 4.230 20 C -0.086 4.086 21 C -0.164 4.164 22 O -0.362 6.362 23 Si 0.708 3.292 24 N -0.112 5.112 25 C -0.178 4.178 26 C -0.186 4.186 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.187 0.813 40 H 0.133 0.867 41 H 0.250 0.750 42 H -0.213 1.213 43 H -0.222 1.222 44 H 0.266 0.734 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.397 -1.727 -1.599 2.386 hybrid contribution -1.581 -0.808 0.100 1.778 sum -1.978 -2.535 -1.498 3.547 Atomic orbital electron populations 1.23298 0.76618 1.05390 1.02136 1.86039 1.23314 1.27304 1.88783 1.19292 0.92806 0.84687 0.96775 1.21497 1.00958 0.92399 1.09141 1.21256 0.94987 0.97580 0.96265 1.21180 0.93828 0.98751 1.04017 1.19599 0.95437 0.91908 0.96524 1.21650 0.90020 0.99329 0.97627 0.87692 1.23362 0.96857 0.99875 0.95855 1.21863 0.83010 0.96504 0.97303 0.88840 1.45456 1.08751 1.12251 1.68878 1.17188 0.82186 0.86413 0.76271 1.90817 1.85037 1.15429 1.52492 1.20138 0.96136 0.83978 1.18200 1.20182 0.91462 0.97017 1.00662 1.20346 1.02468 0.90566 1.01410 1.20846 1.00994 0.90706 1.10480 1.21314 0.84604 0.97323 1.05345 1.25039 1.12841 0.90051 0.88497 1.86480 1.76527 1.56341 1.16839 0.92984 0.74933 0.80614 0.80683 1.41834 1.10637 1.06932 1.51807 1.23606 0.97880 0.98806 0.97544 1.20492 0.91518 0.98813 1.07745 0.91889 0.91770 0.86684 0.84210 0.83796 0.84170 0.87550 0.89521 0.75692 0.91738 0.89815 0.91948 0.81334 0.86727 0.75035 1.21329 1.22240 0.73410 0.91683 0.87893 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.89 10.50 -92.41 -0.97 -2.86 16 3 C 0.11 0.58 6.69 22.51 0.15 0.73 16 4 C -0.22 -0.53 9.04 22.37 0.20 -0.32 16 5 C -0.08 -0.05 10.04 22.25 0.22 0.18 16 6 C -0.16 -0.02 8.62 22.28 0.19 0.17 16 7 C -0.03 -0.03 5.29 -19.88 -0.11 -0.14 16 8 C -0.07 0.20 3.87 -10.92 -0.04 0.16 16 9 H 0.10 -0.49 8.09 -2.39 -0.02 -0.51 16 10 C -0.12 0.53 7.29 31.12 0.23 0.76 16 11 C 0.12 -0.11 4.29 45.52 0.20 0.08 16 12 H 0.09 0.25 7.50 -2.39 -0.02 0.24 16 13 N -0.70 0.59 5.26 -444.03 -2.34 -1.75 16 14 C 0.59 3.51 7.79 86.45 0.67 4.18 16 15 O -0.56 -7.42 14.42 -4.32 -0.06 -7.49 16 16 C -0.07 -0.27 7.06 40.35 0.28 0.01 16 17 C -0.08 -0.38 6.21 -19.57 -0.12 -0.50 16 18 C -0.09 -0.41 9.83 71.23 0.70 0.29 16 19 C -0.21 0.02 9.27 22.01 0.20 0.22 16 20 C 0.03 -0.06 6.46 41.34 0.27 0.21 16 21 C -0.05 0.23 3.08 71.24 0.22 0.45 16 22 O -0.55 2.23 12.88 -148.98 -1.92 0.31 16 23 Si 0.80 -3.87 30.56 68.60 2.10 -1.77 16 24 N -0.51 0.90 5.99 -171.92 -1.03 -0.13 16 25 C -0.14 0.20 7.27 31.21 0.23 0.43 16 26 C -0.17 -0.66 9.65 22.36 0.22 -0.45 16 27 H 0.06 -0.23 7.66 -2.39 -0.02 -0.24 16 28 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 29 H 0.11 -0.61 8.14 -2.38 -0.02 -0.63 16 30 H 0.14 -0.18 6.30 -2.92 -0.02 -0.20 16 31 H 0.14 -0.54 8.06 -2.91 -0.02 -0.57 16 32 H 0.14 -0.48 6.64 -2.91 -0.02 -0.50 16 33 H 0.11 -0.51 7.73 -2.39 -0.02 -0.53 16 34 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 35 H 0.41 -2.56 7.83 -92.71 -0.73 -3.29 16 36 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.06 0.53 6.48 -2.39 -0.02 0.52 16 39 H 0.17 -0.80 6.19 -2.91 -0.02 -0.82 16 40 H 0.12 -0.47 7.96 -2.39 -0.02 -0.49 16 41 H 0.40 -4.46 8.70 -74.05 -0.64 -5.10 16 42 H -0.29 -0.28 7.11 99.48 0.71 0.42 16 43 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 44 H 0.43 -2.85 8.19 -92.71 -0.76 -3.61 16 45 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 46 H 0.10 -0.24 6.30 -2.39 -0.02 -0.25 16 47 H 0.13 0.32 8.05 -2.91 -0.02 0.29 16 Total: 0.00 -21.38 385.43 -0.45 -21.83 By element: Atomic # 1 Polarization: -14.62 SS G_CDS: -1.06 Total: -15.68 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.83 Total: 7.54 kcal Atomic # 7 Polarization: 1.49 SS G_CDS: -3.37 Total: -1.88 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -2.95 Total: -10.04 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.10 Total: -1.77 kcal Total: -21.38 -0.45 -21.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_13940406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.253 kcal (2) G-P(sol) polarization free energy of solvation -21.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds