Wall clock time and date at job start Sat Mar 6 2021 14:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35909 * 116.99797 * 2 1 4 4 C 1.38711 * 120.05032 * 180.02562 * 3 2 1 5 5 C 1.38175 * 119.93994 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.97152 * 180.02562 * 5 4 3 7 7 H 1.08993 * 112.84651 * 348.80113 * 6 5 4 8 8 C 1.53777 * 113.61396 * 119.99844 * 6 5 4 9 9 C 1.53787 * 87.08212 * 140.06327 * 8 6 5 10 10 H 1.08997 * 113.61287 * 219.93736 * 9 8 6 11 11 N 1.46496 * 113.61142 * 89.11526 * 9 8 6 12 12 C 1.34775 * 119.99642 * 155.00452 * 11 9 8 13 13 O 1.21279 * 120.00300 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99773 * 180.02562 * 12 11 9 15 15 O 1.42905 * 109.47264 * 179.97438 * 14 12 11 16 16 C 1.35897 * 117.00093 * 179.97438 * 15 14 12 17 17 C 1.38707 * 120.05413 * 180.02562 * 16 15 14 18 18 C 1.38169 * 119.94386 * 180.02562 * 17 16 15 19 19 C 1.50697 * 119.97175 * 180.02562 * 18 17 16 20 20 O 1.42907 * 109.47334 * 299.99597 * 19 18 17 21 21 Si 1.86300 * 109.47116 * 180.02562 * 19 18 17 22 22 C 1.38241 * 120.05726 * 359.97438 * 18 17 16 23 23 C 1.38289 * 120.10753 * 0.02562 * 22 18 17 24 24 C 1.38125 * 120.05977 * 359.68484 * 23 22 18 25 25 C 1.53782 * 113.68667 * 217.53594 * 6 5 4 26 26 C 1.38246 * 120.05140 * 0.27511 * 5 4 3 27 27 C 1.38280 * 120.11549 * 359.44773 * 26 5 4 28 28 C 1.38121 * 120.05616 * 0.55286 * 27 26 5 29 29 H 1.09005 * 109.47357 * 299.99845 * 1 2 3 30 30 H 1.09004 * 109.47521 * 59.99474 * 1 2 3 31 31 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.07993 * 120.03630 * 359.95958 * 4 3 2 33 33 H 1.09006 * 113.61372 * 25.52039 * 8 6 5 34 34 H 1.08995 * 113.61846 * 254.61366 * 8 6 5 35 35 H 0.96998 * 120.00192 * 334.99976 * 11 9 8 36 36 H 1.09001 * 109.47438 * 59.99564 * 14 12 11 37 37 H 1.09004 * 109.47113 * 299.99819 * 14 12 11 38 38 H 1.08001 * 120.03269 * 359.97438 * 17 16 15 39 39 H 1.08995 * 109.47584 * 60.00166 * 19 18 17 40 40 H 0.96700 * 114.00179 * 180.02562 * 20 19 18 41 41 H 1.48499 * 110.00187 * 59.99990 * 21 19 18 42 42 H 1.48506 * 110.00296 * 181.31760 * 21 19 18 43 43 H 1.07994 * 119.94651 * 179.97438 * 22 18 17 44 44 H 1.08008 * 119.97238 * 179.97438 * 23 22 18 45 45 H 1.08000 * 120.02760 * 180.32268 * 24 23 22 46 46 H 1.08998 * 113.61393 * 105.45894 * 25 6 5 47 47 H 1.08998 * 113.61762 * 334.55465 * 25 6 5 48 48 H 1.08008 * 119.93723 * 179.70610 * 26 5 4 49 49 H 1.08004 * 119.97849 * 180.25323 * 27 26 5 50 50 H 1.07999 * 120.03262 * 179.70293 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.0559 2.5172 -0.0011 6 6 5.5608 2.5983 -0.0022 7 1 6.0365 1.6372 0.1925 8 6 6.1370 3.3348 -1.2230 9 6 7.1526 3.9725 -0.2602 10 1 7.3502 5.0241 -0.4678 11 7 8.3770 3.1857 -0.0933 12 6 9.5225 3.7921 0.2762 13 8 9.5398 4.9891 0.4700 14 6 10.7822 2.9827 0.4473 15 8 11.8527 3.8446 0.8389 16 6 13.0675 3.2687 1.0371 17 6 14.1509 4.0462 1.4189 18 6 15.3852 3.4584 1.6192 19 6 16.5625 4.3023 2.0347 20 8 16.8109 5.2967 1.0388 21 14 18.0677 3.2203 2.2198 22 6 15.5408 2.0965 1.4399 23 6 14.4622 1.3192 1.0592 24 6 13.2249 1.9011 0.8635 25 6 6.1183 3.7467 0.8553 26 6 3.3018 3.6758 0.0047 27 6 1.9208 3.6048 -0.0006 28 6 1.2913 2.3754 0.0000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0206 0.3800 -0.0003 33 1 5.4461 4.0519 -1.6665 34 1 6.5905 2.6714 -1.9593 35 1 8.3632 2.2283 -0.2485 36 1 11.0333 2.4975 -0.4959 37 1 10.6258 2.2251 1.2153 38 1 14.0300 5.1103 1.5588 39 1 16.3441 4.7875 2.9860 40 1 17.5572 5.8775 1.2405 41 1 18.3758 2.5536 0.9292 42 1 19.2283 4.0356 2.6601 43 1 16.5064 1.6390 1.5966 44 1 14.5863 0.2555 0.9193 45 1 12.3817 1.2928 0.5713 46 1 6.5566 3.4156 1.7967 47 1 5.4223 4.5762 0.9799 48 1 3.7922 4.6382 0.0090 49 1 1.3338 4.5114 -0.0002 50 1 0.2128 2.3204 0.0007 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_4860298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:41:46 Heat of formation + Delta-G solvation = -49.987029 kcal Electronic energy + Delta-G solvation = -31281.518360 eV Core-core repulsion = 26821.351764 eV Total energy + Delta-G solvation = -4460.166596 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.80868 -41.35001 -40.77059 -39.76540 -38.84520 -37.86581 -37.39841 -34.64417 -32.59432 -32.23128 -31.65757 -30.96898 -29.23257 -28.23128 -26.84274 -26.69613 -25.86545 -23.65232 -23.60254 -22.91612 -22.22176 -21.58703 -20.29185 -19.23966 -18.73721 -18.58813 -18.22459 -17.47581 -17.41161 -17.23586 -17.08242 -16.89519 -16.67104 -16.62754 -15.97007 -15.83838 -15.70657 -15.50547 -15.29526 -14.83882 -14.53404 -14.44395 -14.32541 -14.11635 -14.01541 -13.77756 -13.64239 -13.47197 -13.31513 -13.24569 -13.17451 -12.68462 -12.51022 -12.30390 -12.15531 -12.10471 -12.01835 -11.72364 -11.65000 -11.58563 -11.27863 -11.04657 -10.58144 -10.18644 -9.88747 -9.74848 -9.28051 -9.15931 -4.91675 0.20908 0.32289 0.39654 0.47446 1.26840 1.39817 1.46510 1.62426 1.95527 2.35016 2.56486 2.64179 2.73260 3.36282 3.45280 3.50281 3.67735 3.73410 3.78947 3.84298 3.87413 3.95235 4.00994 4.08903 4.09263 4.14058 4.18528 4.27232 4.27601 4.27858 4.34439 4.38557 4.49215 4.54397 4.61996 4.63712 4.66321 4.70913 4.77997 4.83841 4.96614 4.98304 5.01591 5.09782 5.13155 5.23989 5.34018 5.37043 5.45948 5.47183 5.51550 5.68464 5.70354 5.82048 6.26914 6.43314 6.45096 6.55612 7.10058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.034 4.034 6 C -0.066 4.066 7 H 0.115 0.885 8 C -0.122 4.122 9 C 0.115 3.885 10 H 0.084 0.916 11 N -0.691 5.691 12 C 0.515 3.485 13 O -0.573 6.573 14 C 0.037 3.963 15 O -0.323 6.323 16 C 0.114 3.886 17 C -0.151 4.151 18 C -0.048 4.048 19 C -0.098 4.098 20 O -0.561 6.561 21 Si 0.782 3.218 22 C -0.160 4.160 23 C -0.070 4.070 24 C -0.203 4.203 25 C -0.141 4.141 26 C -0.162 4.162 27 C -0.085 4.085 28 C -0.222 4.222 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.422 0.578 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.395 0.605 41 H -0.294 1.294 42 H -0.287 1.287 43 H 0.147 0.853 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -7.562 0.998 7.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.064 3.936 4 C -0.182 4.182 5 C -0.034 4.034 6 C -0.084 4.084 7 H 0.133 0.867 8 C -0.160 4.160 9 C 0.010 3.990 10 H 0.102 0.898 11 N -0.345 5.345 12 C 0.302 3.698 13 O -0.451 6.451 14 C -0.040 4.040 15 O -0.236 6.236 16 C 0.069 3.931 17 C -0.170 4.170 18 C -0.048 4.048 19 C -0.206 4.206 20 O -0.371 6.371 21 Si 0.686 3.314 22 C -0.177 4.177 23 C -0.087 4.087 24 C -0.221 4.221 25 C -0.180 4.180 26 C -0.180 4.180 27 C -0.103 4.103 28 C -0.241 4.241 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.260 0.740 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.245 0.755 41 H -0.221 1.221 42 H -0.214 1.214 43 H 0.165 0.835 44 H 0.183 0.817 45 H 0.181 0.819 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.155 0.845 49 H 0.159 0.841 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.091 -7.142 0.615 7.467 hybrid contribution -0.356 1.242 -0.487 1.381 sum -2.447 -5.900 0.128 6.389 Atomic orbital electron populations 1.23289 0.76694 1.05378 1.02076 1.86040 1.23237 1.27267 1.88790 1.19307 0.92916 0.84597 0.96793 1.20513 0.91395 0.98889 1.07408 1.19622 0.95606 0.91793 0.96402 1.21628 0.89837 0.99625 0.97312 0.86713 1.23366 0.96688 0.99866 0.96063 1.21855 0.83280 0.96278 0.97591 0.89763 1.45335 1.07343 1.12610 1.69220 1.20554 0.85381 0.87784 0.76087 1.90765 1.86027 1.17351 1.50926 1.22740 0.83817 0.92556 1.04906 1.86117 1.16476 1.37338 1.83715 1.19169 0.84390 0.92708 0.96870 1.20290 0.91408 0.99889 1.05396 1.19282 0.92774 0.94158 0.98607 1.25260 1.05408 0.96309 0.93576 1.86557 1.55577 1.47458 1.47494 0.93979 0.72607 0.81557 0.83258 1.21174 1.00656 0.92563 1.03316 1.21330 0.90924 1.01544 0.94952 1.21643 1.00862 0.92524 1.07059 1.23558 0.97763 0.98872 0.97777 1.21175 0.93814 0.98829 1.04144 1.21230 0.95033 0.97539 0.96484 1.21484 1.00919 0.92453 1.09226 0.91935 0.91875 0.86655 0.84750 0.88095 0.88996 0.74003 0.85724 0.85378 0.86997 0.89167 0.75486 1.22138 1.21413 0.83537 0.81713 0.81896 0.91130 0.88440 0.84472 0.84091 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.59 10.50 -92.53 -0.97 -2.56 16 3 C 0.11 0.48 6.69 22.51 0.15 0.63 16 4 C -0.16 -0.41 9.65 22.37 0.22 -0.20 16 5 C -0.03 0.01 5.29 -19.88 -0.11 -0.10 16 6 C -0.07 0.31 3.85 -11.01 -0.04 0.27 16 7 H 0.11 -0.89 8.09 -2.39 -0.02 -0.91 16 8 C -0.12 0.68 7.29 31.12 0.23 0.91 16 9 C 0.12 -0.22 4.32 45.52 0.20 -0.03 16 10 H 0.08 0.29 7.46 -2.39 -0.02 0.27 16 11 N -0.69 2.79 5.26 -440.03 -2.32 0.47 16 12 C 0.52 1.80 7.91 87.66 0.69 2.50 16 13 O -0.57 -8.96 16.10 16.01 0.26 -8.70 16 14 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 15 O -0.32 -2.67 9.67 -73.35 -0.71 -3.38 16 16 C 0.11 0.69 6.69 22.51 0.15 0.84 16 17 C -0.15 -1.35 9.55 22.37 0.21 -1.13 16 18 C -0.05 -0.25 5.42 -19.88 -0.11 -0.35 16 19 C -0.10 -0.22 2.81 71.23 0.20 -0.02 16 20 O -0.56 -3.23 12.74 -148.98 -1.90 -5.13 16 21 Si 0.78 -1.13 29.78 68.60 2.04 0.91 16 22 C -0.16 -0.09 8.67 22.28 0.19 0.10 16 23 C -0.07 0.17 10.04 22.25 0.22 0.39 16 24 C -0.20 0.24 9.04 22.37 0.20 0.44 16 25 C -0.14 0.37 7.25 31.12 0.23 0.60 16 26 C -0.16 0.03 8.62 22.28 0.19 0.22 16 27 C -0.08 -0.04 10.04 22.25 0.22 0.18 16 28 C -0.22 -0.45 9.04 22.37 0.20 -0.25 16 29 H 0.06 -0.25 7.66 -2.38 -0.02 -0.27 16 30 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 31 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H 0.13 0.05 8.05 -2.91 -0.02 0.02 16 33 H 0.10 -0.51 7.73 -2.38 -0.02 -0.53 16 34 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.42 -4.94 8.70 -92.71 -0.81 -5.74 16 36 H 0.13 -1.05 7.68 -2.39 -0.02 -1.07 16 37 H 0.13 -1.16 7.65 -2.38 -0.02 -1.18 16 38 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.09 -0.07 7.96 -2.39 -0.02 -0.09 16 40 H 0.39 -1.09 8.74 -74.06 -0.65 -1.74 16 41 H -0.29 -1.49 7.11 99.48 0.71 -0.78 16 42 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 43 H 0.15 -0.57 4.87 -2.91 -0.01 -0.58 16 44 H 0.17 -1.52 8.06 -2.91 -0.02 -1.54 16 45 H 0.16 -1.43 6.30 -2.91 -0.02 -1.45 16 46 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.10 -0.24 6.30 -2.39 -0.02 -0.26 16 48 H 0.14 -0.44 6.64 -2.91 -0.02 -0.46 16 49 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 50 H 0.14 -0.20 6.30 -2.91 -0.02 -0.22 16 Total: 0.00 -30.38 411.88 0.72 -29.65 By element: Atomic # 1 Polarization: -17.19 SS G_CDS: -0.43 Total: -17.62 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 4.74 Total: 6.36 kcal Atomic # 7 Polarization: 2.79 SS G_CDS: -2.32 Total: 0.47 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -3.32 Total: -19.77 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 2.04 Total: 0.91 kcal Total: -30.38 0.72 -29.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_4860298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.332 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds