Wall clock time and date at job start Sat Mar 6 2021 14:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38705 * 120.05924 * 180.25191 * 3 2 1 5 5 C 1.38173 * 119.94203 * 180.25551 * 4 3 2 6 6 C 1.50701 * 119.96834 * 179.74471 * 5 4 3 7 7 H 1.09001 * 112.85425 * 350.35083 * 6 5 4 8 8 C 1.53780 * 113.61500 * 121.55426 * 6 5 4 9 9 C 1.53784 * 87.08398 * 139.97635 * 8 6 5 10 10 H 1.08994 * 113.61581 * 219.93779 * 9 8 6 11 11 N 1.46502 * 113.60892 * 89.11513 * 9 8 6 12 12 C 1.34777 * 119.99525 * 155.00194 * 11 9 8 13 13 O 1.21285 * 120.00242 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00003 * 180.02562 * 12 11 9 15 15 O 1.42898 * 109.47411 * 180.02562 * 14 12 11 16 16 C 1.35992 * 117.00148 * 179.97438 * 15 14 12 17 17 C 1.39155 * 120.06937 * 179.97438 * 16 15 14 18 18 O 1.35990 * 120.07929 * 0.03033 * 17 16 15 19 19 C 1.42895 * 117.00530 * 179.97438 * 18 17 16 20 20 C 1.38571 * 119.85141 * 180.02562 * 17 16 15 21 21 C 1.38245 * 119.99812 * 0.02562 * 20 17 16 22 22 C 1.50694 * 119.92584 * 180.02562 * 21 20 17 23 23 O 1.42906 * 109.47297 * 64.99583 * 22 21 20 24 24 Si 1.86297 * 109.47104 * 184.99809 * 22 21 20 25 25 C 1.38252 * 120.14667 * 359.97062 * 21 20 17 26 26 C 1.38244 * 120.14499 * 359.77745 * 25 21 20 27 27 C 1.53788 * 113.61285 * 219.15754 * 6 5 4 28 28 C 1.38232 * 120.05823 * 359.76822 * 5 4 3 29 29 C 1.38294 * 120.11124 * 359.97438 * 28 5 4 30 30 C 1.38122 * 120.05499 * 359.97438 * 29 28 5 31 31 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 33 33 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 34 34 H 1.07997 * 120.03160 * 0.02562 * 4 3 2 35 35 H 1.09000 * 113.61542 * 254.52600 * 8 6 5 36 36 H 1.09004 * 113.61317 * 25.43119 * 8 6 5 37 37 H 0.96996 * 120.00171 * 335.00161 * 11 9 8 38 38 H 1.09008 * 109.46859 * 299.99799 * 14 12 11 39 39 H 1.08994 * 109.46875 * 59.99732 * 14 12 11 40 40 H 1.09001 * 109.47001 * 299.99877 * 19 18 17 41 41 H 1.09001 * 109.47445 * 59.99570 * 19 18 17 42 42 H 1.08997 * 109.47559 * 179.97438 * 19 18 17 43 43 H 1.07993 * 119.99967 * 179.97438 * 20 17 16 44 44 H 1.09001 * 109.46960 * 304.99485 * 22 21 20 45 45 H 0.96701 * 113.99802 * 179.97438 * 23 22 21 46 46 H 1.48504 * 110.00343 * 178.67967 * 24 22 21 47 47 H 1.48506 * 109.99815 * 299.99781 * 24 22 21 48 48 H 1.08000 * 119.92511 * 180.02562 * 25 21 20 49 49 H 1.08008 * 119.99998 * 180.27612 * 26 25 21 50 50 H 1.08996 * 113.61249 * 334.57598 * 27 6 5 51 51 H 1.09004 * 113.60939 * 105.47000 * 27 6 5 52 52 H 1.08003 * 119.94745 * 179.97438 * 28 5 4 53 53 H 1.08000 * 119.97251 * 179.97438 * 29 28 5 54 54 H 1.08002 * 120.02504 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2849 -0.0053 5 6 4.0559 2.5173 0.0001 6 6 5.5607 2.5983 0.0002 7 1 6.0367 1.6316 0.1641 8 6 6.1360 3.3731 -1.1972 9 6 7.1509 3.9818 -0.2152 10 1 7.3473 5.0395 -0.3901 11 7 8.3763 3.1915 -0.0730 12 6 9.5212 3.7875 0.3149 13 8 9.5372 4.9780 0.5457 14 6 10.7819 2.9747 0.4607 15 8 11.8511 3.8250 0.8798 16 6 13.0675 3.2443 1.0601 17 6 14.1537 4.0130 1.4671 18 8 14.0012 5.3464 1.6860 19 6 15.1595 6.0723 2.1025 20 6 15.3913 3.4166 1.6489 21 6 15.5448 2.0610 1.4255 22 6 16.8912 1.4140 1.6243 23 8 17.2568 1.4891 3.0038 24 14 16.8053 -0.3718 1.1009 25 6 14.4655 1.2973 1.0213 26 6 13.2270 1.8851 0.8431 27 6 6.1172 3.7186 0.8948 28 6 3.3019 3.6758 0.0058 29 6 1.9208 3.6048 0.0057 30 6 1.2914 2.3753 -0.0007 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.0207 0.3801 -0.0098 35 1 6.5902 2.7332 -1.9538 36 1 5.4442 4.1027 -1.6182 37 1 8.3636 2.2394 -0.2579 38 1 10.6265 2.1935 1.2049 39 1 11.0334 2.5193 -0.4971 40 1 15.5270 5.6613 3.0428 41 1 15.9349 5.9873 1.3412 42 1 14.9003 7.1219 2.2410 43 1 16.2360 4.0110 1.9643 44 1 17.6364 1.9337 1.0221 45 1 18.1145 1.0907 3.2056 46 1 18.1352 -1.0129 1.2620 47 1 15.7927 -1.0915 1.9145 48 1 14.5894 0.2385 0.8482 49 1 12.3844 1.2855 0.5315 50 1 5.4203 4.5427 1.0469 51 1 6.5562 3.3571 1.8248 52 1 3.7921 4.6382 0.0104 53 1 1.3339 4.5113 0.0107 54 1 0.2127 2.3204 -0.0012 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_60476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:42:03 Heat of formation + Delta-G solvation = -82.594899 kcal Electronic energy + Delta-G solvation = -35927.939502 eV Core-core repulsion = 30992.139111 eV Total energy + Delta-G solvation = -4935.800390 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.87752 -41.56687 -40.88664 -39.94281 -39.15118 -38.78155 -37.84113 -37.11412 -34.60666 -32.28965 -32.03627 -31.47087 -31.00727 -29.46569 -28.45016 -28.22438 -26.67926 -26.26721 -25.79716 -23.72245 -23.53304 -22.59902 -22.25785 -21.77247 -20.29297 -19.73153 -18.78484 -18.60970 -18.30746 -18.21042 -17.54399 -17.46493 -17.23084 -16.96174 -16.82124 -16.66935 -16.62527 -16.13455 -15.92209 -15.85436 -15.71185 -15.56047 -15.37487 -15.03130 -14.48136 -14.40812 -14.28262 -14.08099 -14.01100 -13.99146 -13.58350 -13.50773 -13.43352 -13.25252 -13.17330 -12.78293 -12.68392 -12.57334 -12.28393 -12.22297 -12.16997 -12.10165 -11.92814 -11.68666 -11.63638 -11.57735 -11.25916 -11.00337 -10.48891 -10.15064 -9.77730 -9.73946 -9.15145 -8.91092 -4.89216 0.17040 0.27713 0.33118 0.48184 1.32207 1.44595 1.47414 1.63949 1.97552 2.31189 2.35546 2.52155 2.57507 2.74089 3.38644 3.47343 3.52869 3.69536 3.71729 3.74902 3.88267 3.89661 3.90707 3.97461 4.05849 4.10347 4.13601 4.17985 4.19500 4.27159 4.28314 4.31536 4.34347 4.34787 4.39499 4.48509 4.55237 4.62983 4.63291 4.66473 4.67568 4.71289 4.79648 4.86157 4.98045 4.99942 5.03260 5.10894 5.11273 5.15440 5.34727 5.39264 5.47987 5.52713 5.58853 5.71099 5.82857 5.97247 6.41835 6.43955 6.54391 6.59728 7.14906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.034 4.034 6 C -0.066 4.066 7 H 0.115 0.885 8 C -0.121 4.121 9 C 0.116 3.884 10 H 0.084 0.916 11 N -0.692 5.692 12 C 0.515 3.485 13 O -0.571 6.571 14 C 0.034 3.966 15 O -0.313 6.313 16 C 0.085 3.915 17 C 0.077 3.923 18 O -0.334 6.334 19 C 0.020 3.980 20 C -0.152 4.152 21 C -0.081 4.081 22 C -0.088 4.088 23 O -0.560 6.560 24 Si 0.773 3.227 25 C -0.114 4.114 26 C -0.159 4.159 27 C -0.142 4.142 28 C -0.161 4.161 29 C -0.085 4.085 30 C -0.222 4.222 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.422 0.578 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.093 0.907 45 H 0.395 0.605 46 H -0.289 1.289 47 H -0.292 1.292 48 H 0.155 0.845 49 H 0.177 0.823 50 H 0.096 0.904 51 H 0.068 0.932 52 H 0.138 0.862 53 H 0.141 0.859 54 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -5.756 -4.637 7.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.182 4.182 5 C -0.034 4.034 6 C -0.084 4.084 7 H 0.133 0.867 8 C -0.159 4.159 9 C 0.011 3.989 10 H 0.102 0.898 11 N -0.346 5.346 12 C 0.302 3.698 13 O -0.449 6.449 14 C -0.044 4.044 15 O -0.227 6.227 16 C 0.040 3.960 17 C 0.032 3.968 18 O -0.248 6.248 19 C -0.074 4.074 20 C -0.171 4.171 21 C -0.081 4.081 22 C -0.196 4.196 23 O -0.370 6.370 24 Si 0.677 3.323 25 C -0.131 4.131 26 C -0.177 4.177 27 C -0.181 4.181 28 C -0.179 4.179 29 C -0.103 4.103 30 C -0.241 4.241 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.260 0.740 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.161 0.839 44 H 0.111 0.889 45 H 0.245 0.755 46 H -0.216 1.216 47 H -0.219 1.219 48 H 0.172 0.828 49 H 0.195 0.805 50 H 0.115 0.885 51 H 0.087 0.913 52 H 0.155 0.845 53 H 0.159 0.841 54 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.136 -5.291 -4.193 6.846 hybrid contribution 0.570 0.140 1.271 1.400 sum -0.566 -5.151 -2.922 5.949 Atomic orbital electron populations 1.23287 0.76697 1.05375 1.02071 1.86039 1.23236 1.27286 1.88796 1.19303 0.92911 0.84589 0.96799 1.20515 0.91400 0.98894 1.07428 1.19629 0.95636 0.91788 0.96362 1.21635 0.89807 0.99655 0.97322 0.86739 1.23362 0.96660 0.99762 0.96082 1.21880 0.83257 0.96274 0.97515 0.89752 1.45332 1.07301 1.13241 1.68688 1.20552 0.85385 0.87710 0.76160 1.90774 1.86010 1.17784 1.50372 1.22786 0.83981 0.92812 1.04822 1.86217 1.15925 1.37109 1.83409 1.18557 0.83861 0.91964 1.01653 1.18637 0.92863 0.83828 1.01470 1.86185 1.37970 1.17508 1.83165 1.23293 0.87163 0.97092 0.99895 1.21027 0.95531 0.96166 1.04392 1.19251 0.95129 0.92875 1.00892 1.25080 0.95658 1.13087 0.85769 1.86555 1.43174 1.82466 1.24811 0.94054 0.77686 0.71324 0.89202 1.20995 0.91465 1.00421 1.00228 1.21355 1.00248 0.91442 1.04689 1.23591 0.97867 0.98978 0.97645 1.21169 0.93809 0.98825 1.04132 1.21233 0.95034 0.97535 0.96487 1.21483 1.00908 0.92455 1.09250 0.86656 0.91970 0.91847 0.84767 0.88848 0.88061 0.73996 0.85736 0.85068 0.92157 0.91356 0.86982 0.83922 0.88901 0.75500 1.21600 1.21917 0.82816 0.80544 0.88538 0.91308 0.84474 0.84087 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.67 10.50 -92.47 -0.97 -2.64 16 3 C 0.11 0.51 6.69 22.51 0.15 0.66 16 4 C -0.16 -0.46 9.65 22.37 0.22 -0.25 16 5 C -0.03 0.00 5.29 -19.88 -0.11 -0.11 16 6 C -0.07 0.29 3.85 -11.01 -0.04 0.25 16 7 H 0.11 -0.85 8.09 -2.39 -0.02 -0.87 16 8 C -0.12 0.67 7.29 31.12 0.23 0.90 16 9 C 0.12 -0.19 4.33 45.58 0.20 0.01 16 10 H 0.08 0.31 7.46 -2.39 -0.02 0.30 16 11 N -0.69 2.58 5.26 -439.75 -2.31 0.26 16 12 C 0.52 2.09 7.91 87.66 0.69 2.78 16 13 O -0.57 -9.44 16.10 15.99 0.26 -9.18 16 14 C 0.03 -0.06 5.22 71.24 0.37 0.32 16 15 O -0.31 -3.00 9.45 -67.05 -0.63 -3.63 16 16 C 0.09 0.61 6.70 22.57 0.15 0.76 16 17 C 0.08 0.75 6.70 22.57 0.15 0.90 16 18 O -0.33 -4.07 10.28 -79.58 -0.82 -4.89 16 19 C 0.02 0.06 9.81 113.37 1.11 1.17 16 20 C -0.15 -0.87 8.67 22.35 0.19 -0.68 16 21 C -0.08 -0.23 5.38 -19.86 -0.11 -0.33 16 22 C -0.09 0.08 2.79 71.23 0.20 0.28 16 23 O -0.56 -1.21 12.81 -148.98 -1.91 -3.11 16 24 Si 0.77 -2.77 29.84 68.60 2.05 -0.72 16 25 C -0.11 0.03 8.66 22.27 0.19 0.22 16 26 C -0.16 0.08 9.04 22.35 0.20 0.28 16 27 C -0.14 0.29 7.27 31.18 0.23 0.52 16 28 C -0.16 -0.01 8.53 22.28 0.19 0.18 16 29 C -0.08 -0.06 10.04 22.26 0.22 0.16 16 30 C -0.22 -0.50 9.04 22.37 0.20 -0.30 16 31 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.06 -0.24 7.66 -2.39 -0.02 -0.25 16 33 H 0.06 -0.26 7.66 -2.39 -0.02 -0.27 16 34 H 0.13 0.09 8.05 -2.91 -0.02 0.07 16 35 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.10 -0.52 7.64 -2.38 -0.02 -0.54 16 37 H 0.42 -4.88 8.70 -92.71 -0.81 -5.68 16 38 H 0.13 -1.02 7.65 -2.38 -0.02 -1.04 16 39 H 0.13 -1.22 7.68 -2.39 -0.02 -1.24 16 40 H 0.06 0.10 7.66 -2.39 -0.02 0.08 16 41 H 0.07 -0.01 7.66 -2.39 -0.02 -0.02 16 42 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.14 0.48 6.30 -2.91 -0.02 0.46 16 44 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 45 H 0.39 -2.37 8.74 -74.06 -0.65 -3.02 16 46 H -0.29 -0.25 7.11 99.48 0.71 0.45 16 47 H -0.29 -0.78 7.05 99.48 0.70 -0.08 16 48 H 0.15 -0.82 4.85 -2.91 -0.01 -0.84 16 49 H 0.18 -1.62 6.30 -2.91 -0.02 -1.63 16 50 H 0.10 -0.18 6.39 -2.39 -0.02 -0.19 16 51 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 52 H 0.14 -0.41 6.72 -2.91 -0.02 -0.43 16 53 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 54 H 0.14 -0.17 6.30 -2.91 -0.02 -0.19 16 Total: 0.00 -33.43 441.17 0.96 -32.48 By element: Atomic # 1 Polarization: -16.89 SS G_CDS: -0.46 Total: -17.35 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 5.76 Total: 8.79 kcal Atomic # 7 Polarization: 2.58 SS G_CDS: -2.31 Total: 0.26 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -4.07 Total: -23.46 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.05 Total: -0.72 kcal Total: -33.43 0.96 -32.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_60476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.120 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds