Wall clock time and date at job start Sat Mar 6 2021 14:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99641 * 2 1 4 4 C 1.38715 * 120.05334 * 179.97438 * 3 2 1 5 5 C 1.38162 * 119.94128 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.97056 * 180.02562 * 5 4 3 7 7 H 1.09005 * 112.84662 * 348.78088 * 6 5 4 8 8 C 1.53777 * 113.61300 * 119.98089 * 6 5 4 9 9 C 1.53774 * 87.08190 * 139.98145 * 8 6 5 10 10 H 1.09002 * 113.61564 * 219.93349 * 9 8 6 11 11 N 1.46506 * 113.61679 * 89.11180 * 9 8 6 12 12 C 1.34776 * 120.00004 * 154.99944 * 11 9 8 13 13 O 1.21656 * 119.99731 * 0.02562 * 12 11 9 14 14 C 1.46993 * 120.00171 * 180.02562 * 12 11 9 15 15 C 1.35801 * 125.14326 * 179.97438 * 14 12 11 16 16 C 1.46251 * 106.09159 * 179.97438 * 15 14 12 17 17 C 1.39777 * 134.15515 * 179.97438 * 16 15 14 18 18 C 1.50702 * 120.09323 * 359.97438 * 17 16 15 19 19 O 1.42900 * 109.47039 * 284.99931 * 18 17 16 20 20 Si 1.86308 * 109.46995 * 164.99849 * 18 17 16 21 21 C 1.36629 * 119.81444 * 180.02562 * 17 16 15 22 22 C 1.38770 * 120.49411 * 359.97366 * 21 17 16 23 23 C 1.38262 * 120.67565 * 0.02562 * 22 21 17 24 24 O 1.35963 * 120.11780 * 180.02562 * 23 22 21 25 25 C 1.42906 * 117.00245 * 0.02562 * 24 23 22 26 26 C 1.39443 * 119.75890 * 0.04298 * 23 22 21 27 27 O 1.34773 * 133.23949 * 180.33168 * 26 23 22 28 28 C 1.53777 * 113.61476 * 217.47692 * 6 5 4 29 29 C 1.38247 * 120.05751 * 359.97438 * 5 4 3 30 30 C 1.38285 * 120.11130 * 0.29804 * 29 5 4 31 31 C 1.38123 * 120.05549 * 359.44969 * 30 29 5 32 32 H 1.09002 * 109.47305 * 60.00243 * 1 2 3 33 33 H 1.09006 * 109.47154 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47764 * 300.00190 * 1 2 3 35 35 H 1.07998 * 120.02333 * 0.04215 * 4 3 2 36 36 H 1.09002 * 113.61178 * 254.52862 * 8 6 5 37 37 H 1.09001 * 113.61589 * 25.43268 * 8 6 5 38 38 H 0.96997 * 119.99571 * 335.00462 * 11 9 8 39 39 H 1.08006 * 126.95396 * 0.02562 * 15 14 12 40 40 H 1.08998 * 109.47049 * 44.99850 * 18 17 16 41 41 H 0.96701 * 114.00149 * 299.99182 * 19 18 17 42 42 H 1.48501 * 109.99767 * 58.68401 * 20 18 17 43 43 H 1.48497 * 109.99886 * 179.97438 * 20 18 17 44 44 H 1.08003 * 119.75528 * 180.02562 * 21 17 16 45 45 H 1.08003 * 119.66051 * 180.02562 * 22 21 17 46 46 H 1.08997 * 109.46958 * 59.99828 * 25 24 23 47 47 H 1.08997 * 109.46727 * 179.97438 * 25 24 23 48 48 H 1.08998 * 109.46907 * 299.99964 * 25 24 23 49 49 H 1.09008 * 113.61444 * 334.56998 * 28 6 5 50 50 H 1.09002 * 113.61389 * 105.46706 * 28 6 5 51 51 H 1.08002 * 119.94131 * 180.02562 * 29 5 4 52 52 H 1.08001 * 119.97301 * 179.69837 * 30 29 5 53 53 H 1.08005 * 120.03130 * 180.25501 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4311 1.2849 0.0005 5 6 4.0558 2.5172 0.0011 6 6 5.5607 2.5984 0.0011 7 1 6.0364 1.6372 0.1961 8 6 6.1378 3.3351 -1.2191 9 6 7.1512 3.9743 -0.2551 10 1 7.3480 5.0261 -0.4629 11 7 8.3764 3.1890 -0.0860 12 6 9.5207 3.7969 0.2848 13 8 9.5361 4.9976 0.4795 14 6 10.7501 3.0090 0.4539 15 6 11.9564 3.5121 0.8224 16 6 12.8749 2.3747 0.8623 17 6 14.2320 2.2291 1.1638 18 6 15.0536 3.4322 1.5496 19 8 15.3312 4.2127 0.3852 20 14 16.6555 2.8700 2.3169 21 6 14.8118 0.9933 1.1066 22 6 14.0633 -0.1200 0.7519 23 6 12.7195 0.0006 0.4497 24 8 11.9967 -1.0979 0.1039 25 6 12.6897 -2.3473 0.0734 26 6 12.1083 1.2529 0.5004 27 8 10.8492 1.6757 0.2718 28 6 6.1156 3.7477 0.8589 29 6 3.3017 3.6759 0.0005 30 6 1.9207 3.6048 0.0057 31 6 1.2913 2.3753 -0.0001 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 4.0206 0.3800 0.0003 36 1 6.5932 2.6718 -1.9545 37 1 5.4468 4.0512 -1.6639 38 1 8.3639 2.2316 -0.2410 39 1 12.1901 4.5434 1.0423 40 1 14.4988 4.0358 2.2679 41 1 15.8239 3.7380 -0.2982 42 1 17.4067 2.0197 1.3587 43 1 17.4752 4.0471 2.7012 44 1 15.8604 0.8819 1.3402 45 1 14.5352 -1.0906 0.7114 46 1 13.0946 -2.5625 1.0622 47 1 11.9986 -3.1390 -0.2160 48 1 13.5042 -2.2935 -0.6489 49 1 5.4184 4.5765 0.9822 50 1 6.5530 3.4175 1.8011 51 1 3.7921 4.6382 0.0005 52 1 1.3338 4.5114 0.0102 53 1 0.2126 2.3203 -0.0002 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_6672420.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:42:20 Heat of formation + Delta-G solvation = -40.387956 kcal Electronic energy + Delta-G solvation = -37712.094077 eV Core-core repulsion = 32677.209255 eV Total energy + Delta-G solvation = -5034.884822 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.165 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.78591 -41.73424 -40.99252 -40.58013 -39.68653 -39.13596 -37.92213 -37.12380 -34.73717 -33.68069 -32.23218 -31.90984 -31.20374 -30.73569 -28.58449 -28.24433 -26.74212 -26.60319 -26.17794 -24.85737 -24.02763 -23.58191 -22.41306 -22.09492 -21.79956 -20.35431 -19.89300 -19.10562 -18.73056 -18.54611 -17.87898 -17.79420 -17.29117 -17.19672 -16.99235 -16.89993 -16.68395 -16.61319 -16.23441 -16.04903 -15.94332 -15.88824 -15.67993 -15.19369 -14.75131 -14.59519 -14.56724 -14.45172 -14.35115 -14.20759 -14.04482 -13.52731 -13.52065 -13.43815 -13.29859 -13.26665 -13.22169 -12.68964 -12.48526 -12.34664 -12.27334 -12.15195 -12.13229 -11.76510 -11.66549 -11.63178 -11.56312 -11.31301 -11.04397 -10.61296 -10.34626 -9.85477 -9.76273 -9.16568 -9.02840 -4.88941 -0.70064 0.07938 0.31346 0.46889 0.58619 1.14457 1.30205 1.59469 1.83914 1.84213 1.98093 2.12316 2.34156 2.37471 2.72502 3.13963 3.37768 3.39947 3.53662 3.62993 3.64305 3.69948 3.79531 3.85265 3.86122 3.91786 3.96275 4.06625 4.15454 4.17587 4.26625 4.31891 4.33895 4.37468 4.41415 4.42849 4.48408 4.52799 4.57070 4.60843 4.69671 4.75572 4.75877 4.77909 4.81903 4.85245 4.92414 4.98515 5.03013 5.04521 5.07953 5.19845 5.29625 5.33234 5.40817 5.49595 5.56905 5.67312 5.81774 6.15833 6.26867 6.42700 6.49731 6.77795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.110 3.890 4 C -0.167 4.167 5 C -0.034 4.034 6 C -0.071 4.071 7 H 0.103 0.897 8 C -0.122 4.122 9 C 0.112 3.888 10 H 0.101 0.899 11 N -0.687 5.687 12 C 0.606 3.394 13 O -0.542 6.542 14 C -0.034 4.034 15 C -0.111 4.111 16 C -0.096 4.096 17 C -0.100 4.100 18 C -0.090 4.090 19 O -0.548 6.548 20 Si 0.782 3.218 21 C -0.089 4.089 22 C -0.165 4.165 23 C 0.137 3.863 24 O -0.333 6.333 25 C 0.014 3.986 26 C 0.022 3.978 27 O -0.181 6.181 28 C -0.137 4.137 29 C -0.159 4.159 30 C -0.083 4.083 31 C -0.221 4.221 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.417 0.583 39 H 0.172 0.828 40 H 0.115 0.885 41 H 0.386 0.614 42 H -0.262 1.262 43 H -0.304 1.304 44 H 0.166 0.834 45 H 0.180 0.820 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.068 0.932 51 H 0.143 0.857 52 H 0.145 0.855 53 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -6.521 0.750 6.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.065 3.935 4 C -0.186 4.186 5 C -0.034 4.034 6 C -0.089 4.089 7 H 0.121 0.879 8 C -0.160 4.160 9 C 0.008 3.992 10 H 0.119 0.881 11 N -0.337 5.337 12 C 0.392 3.608 13 O -0.422 6.422 14 C -0.084 4.084 15 C -0.132 4.132 16 C -0.098 4.098 17 C -0.100 4.100 18 C -0.197 4.197 19 O -0.356 6.356 20 Si 0.685 3.315 21 C -0.106 4.106 22 C -0.184 4.184 23 C 0.091 3.909 24 O -0.247 6.247 25 C -0.080 4.080 26 C -0.026 4.026 27 O -0.083 6.083 28 C -0.176 4.176 29 C -0.177 4.177 30 C -0.101 4.101 31 C -0.240 4.240 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.254 0.746 39 H 0.190 0.810 40 H 0.133 0.867 41 H 0.236 0.764 42 H -0.188 1.188 43 H -0.233 1.233 44 H 0.183 0.817 45 H 0.197 0.803 46 H 0.095 0.905 47 H 0.133 0.867 48 H 0.092 0.908 49 H 0.127 0.873 50 H 0.087 0.913 51 H 0.160 0.840 52 H 0.163 0.837 53 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.558 -5.634 1.016 5.752 hybrid contribution -0.375 -0.116 -1.231 1.292 sum 0.183 -5.750 -0.215 5.757 Atomic orbital electron populations 1.23297 0.76616 1.05387 1.02141 1.86042 1.23326 1.27340 1.88800 1.19281 0.92753 0.84694 0.96808 1.20494 0.91557 0.98825 1.07728 1.19578 0.95291 0.91958 0.96554 1.21617 0.90199 0.99427 0.97655 0.87882 1.23390 0.96767 0.99931 0.95911 1.22033 0.82625 0.96619 0.97946 0.88061 1.45543 1.07974 1.12630 1.67572 1.16635 0.81488 0.85648 0.77046 1.90894 1.84780 1.14013 1.52471 1.21912 0.96742 0.81314 1.08436 1.22857 0.90058 1.00058 1.00190 1.19579 0.94900 0.91165 1.04118 1.19555 0.91411 0.96502 1.02566 1.25391 1.09093 0.93469 0.91767 1.86608 1.77809 1.41948 1.29233 0.93891 0.72372 0.79738 0.85520 1.20889 1.01406 0.90390 0.97930 1.21375 0.90352 1.02208 1.04434 1.17986 0.90639 0.83363 0.98894 1.86147 1.39166 1.15866 1.83540 1.23486 0.99488 0.81592 1.03418 1.19207 0.82950 0.93880 1.06583 1.84013 1.28841 1.21840 1.73602 1.23567 0.97619 0.98904 0.97488 1.21184 0.93807 0.98731 1.03961 1.21256 0.94974 0.97566 0.96256 1.21496 1.00943 0.92389 1.09134 0.91786 0.86692 0.91853 0.85374 0.89718 0.87059 0.74632 0.81010 0.86689 0.76445 1.18782 1.23277 0.81720 0.80303 0.90451 0.86681 0.90810 0.87311 0.91314 0.83980 0.83733 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.11 10.50 -92.48 -0.97 -3.08 16 3 C 0.11 0.65 6.69 22.51 0.15 0.80 16 4 C -0.17 -0.82 9.65 22.37 0.22 -0.61 16 5 C -0.03 -0.06 5.29 -19.88 -0.11 -0.16 16 6 C -0.07 0.11 3.86 -11.01 -0.04 0.07 16 7 H 0.10 -0.23 8.09 -2.38 -0.02 -0.25 16 8 C -0.12 0.36 7.29 31.12 0.23 0.59 16 9 C 0.11 0.03 4.32 45.51 0.20 0.23 16 10 H 0.10 0.28 7.46 -2.39 -0.02 0.26 16 11 N -0.69 -1.67 5.26 -443.71 -2.33 -4.00 16 12 C 0.61 5.14 7.80 86.54 0.67 5.82 16 13 O -0.54 -7.82 16.43 -4.21 -0.07 -7.88 16 14 C -0.03 -0.29 7.07 24.00 0.17 -0.12 16 15 C -0.11 -0.92 10.68 23.79 0.25 -0.67 16 16 C -0.10 -0.62 6.16 -20.25 -0.12 -0.74 16 17 C -0.10 -0.13 5.26 -19.87 -0.10 -0.24 16 18 C -0.09 -0.03 2.71 71.24 0.19 0.17 16 19 O -0.55 -2.05 12.88 -148.98 -1.92 -3.96 16 20 Si 0.78 -2.94 30.25 68.60 2.08 -0.87 16 21 C -0.09 0.28 8.62 22.02 0.19 0.47 16 22 C -0.17 0.50 9.03 22.40 0.20 0.71 16 23 C 0.14 0.43 6.70 22.57 0.15 0.58 16 24 O -0.33 -0.87 10.50 -93.13 -0.98 -1.85 16 25 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 26 C 0.02 0.16 7.35 23.14 0.17 0.33 16 27 O -0.18 -1.54 10.28 -13.41 -0.14 -1.67 16 28 C -0.14 0.13 7.25 31.12 0.23 0.35 16 29 C -0.16 -0.06 8.61 22.28 0.19 0.13 16 30 C -0.08 -0.06 10.04 22.25 0.22 0.16 16 31 C -0.22 -0.60 9.04 22.37 0.20 -0.40 16 32 H 0.06 -0.22 7.66 -2.39 -0.02 -0.24 16 33 H 0.11 -0.57 8.14 -2.38 -0.02 -0.59 16 34 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 35 H 0.13 0.50 8.05 -2.91 -0.02 0.47 16 36 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.11 -0.48 7.72 -2.39 -0.02 -0.50 16 38 H 0.42 -0.28 8.42 -92.71 -0.78 -1.06 16 39 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.12 0.04 7.96 -2.39 -0.02 0.02 16 41 H 0.39 -1.05 8.70 -74.06 -0.64 -1.69 16 42 H -0.26 0.79 6.69 99.48 0.67 1.45 16 43 H -0.30 -1.42 7.11 99.48 0.71 -0.72 16 44 H 0.17 -1.39 4.81 -2.91 -0.01 -1.40 16 45 H 0.18 -1.79 6.26 -2.91 -0.02 -1.81 16 46 H 0.08 -0.77 7.66 -2.39 -0.02 -0.79 16 47 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 48 H 0.07 -0.71 7.66 -2.39 -0.02 -0.72 16 49 H 0.11 -0.29 6.31 -2.38 -0.02 -0.30 16 50 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 51 H 0.14 -0.50 6.65 -2.91 -0.02 -0.52 16 52 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 53 H 0.14 -0.14 6.30 -2.91 -0.02 -0.16 16 Total: 0.00 -23.85 438.98 0.72 -23.13 By element: Atomic # 1 Polarization: -8.93 SS G_CDS: -0.43 Total: -9.36 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.49 Total: 9.56 kcal Atomic # 7 Polarization: -1.67 SS G_CDS: -2.33 Total: -4.00 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -4.07 Total: -18.45 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.08 Total: -0.87 kcal Total: -23.85 0.72 -23.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_6672420.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.260 kcal (2) G-P(sol) polarization free energy of solvation -23.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds