Wall clock time and date at job start Sat Mar 6 2021 14:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35895 * 117.00165 * 2 1 4 4 C 1.38710 * 120.05591 * 359.97438 * 3 2 1 5 5 C 1.38162 * 119.94555 * 180.02562 * 4 3 2 6 6 C 1.38250 * 120.05331 * 359.97438 * 5 4 3 7 7 C 1.38282 * 120.11004 * 0.04225 * 6 5 4 8 8 C 1.50702 * 119.96921 * 179.97438 * 7 6 5 9 9 H 1.08996 * 112.85489 * 168.80542 * 8 7 6 10 10 C 1.53784 * 113.61199 * 299.99743 * 8 7 6 11 11 C 1.53787 * 87.08341 * 140.06754 * 10 8 7 12 12 H 1.08999 * 113.61389 * 219.93830 * 11 10 8 13 13 N 1.46496 * 113.61356 * 89.11177 * 11 10 8 14 14 C 1.34783 * 119.99795 * 154.99927 * 13 11 10 15 15 O 1.21700 * 119.99693 * 0.02562 * 14 13 11 16 16 C 1.46582 * 119.99912 * 179.97438 * 14 13 11 17 17 C 1.36644 * 125.45603 * 180.02562 * 16 14 13 18 18 C 1.37466 * 113.29764 * 180.23712 * 17 16 14 19 19 C 1.50706 * 122.45349 * 179.71001 * 18 17 16 20 20 C 1.33822 * 115.10015 * 359.49809 * 18 17 16 21 21 C 1.50698 * 124.52237 * 180.23956 * 20 18 17 22 22 O 1.42895 * 109.47349 * 313.60344 * 21 20 18 23 23 Si 1.86299 * 109.47025 * 193.60521 * 21 20 18 24 24 S 1.70611 * 110.95254 * 0.48642 * 20 18 17 25 25 C 1.53778 * 113.69570 * 37.53033 * 8 7 6 26 26 C 1.38119 * 120.06018 * 0.23142 * 7 6 5 27 27 H 1.08997 * 109.46576 * 59.99742 * 1 2 3 28 28 H 1.08996 * 109.47123 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46950 * 300.00463 * 1 2 3 30 30 H 1.08002 * 120.03042 * 0.04334 * 4 3 2 31 31 H 1.08002 * 119.97545 * 179.97438 * 5 4 3 32 32 H 1.08007 * 119.93797 * 180.02562 * 6 5 4 33 33 H 1.08998 * 113.61783 * 25.52211 * 10 8 7 34 34 H 1.09007 * 113.61556 * 254.61580 * 10 8 7 35 35 H 0.97002 * 120.00256 * 335.00777 * 13 11 10 36 36 H 1.07998 * 123.35524 * 359.96537 * 17 16 14 37 37 H 1.08998 * 109.47091 * 94.37969 * 19 18 17 38 38 H 1.09001 * 109.47395 * 214.38416 * 19 18 17 39 39 H 1.09006 * 109.46571 * 334.37607 * 19 18 17 40 40 H 1.09004 * 109.46872 * 73.60969 * 21 20 18 41 41 H 0.96705 * 113.99891 * 179.97438 * 22 21 20 42 42 H 1.48498 * 110.00120 * 59.99904 * 23 21 20 43 43 H 1.48501 * 110.00274 * 181.32259 * 23 21 20 44 44 H 1.08997 * 113.61390 * 105.45847 * 25 8 7 45 45 H 1.09008 * 113.61624 * 334.56333 * 25 8 7 46 46 H 1.08003 * 120.02905 * 179.72235 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3749 -0.0005 5 6 1.9214 3.6047 -0.0011 6 6 3.3021 3.6756 -0.0005 7 6 4.0563 2.5166 -0.0003 8 6 5.5611 2.5976 -0.0003 9 1 6.0368 1.6366 0.1948 10 6 6.1383 3.3340 -1.2208 11 6 7.1532 3.9718 -0.2574 12 1 7.3511 5.0234 -0.4649 13 7 8.3774 3.1848 -0.0894 14 6 9.5229 3.7912 0.2807 15 8 9.5399 4.9924 0.4757 16 6 10.7476 3.0038 0.4493 17 6 11.9651 3.5013 0.8199 18 6 12.9448 2.5400 0.8968 19 6 14.3659 2.8626 1.2808 20 6 12.5432 1.2961 0.6101 21 6 13.4374 0.0833 0.6334 22 8 14.6589 0.3789 -0.0468 23 14 12.5810 -1.3360 -0.2169 24 16 10.8854 1.2676 0.2080 25 6 6.1181 3.7461 0.8573 26 6 3.4316 1.2847 -0.0055 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2131 2.3200 -0.0002 31 1 1.3346 4.5114 -0.0019 32 1 3.7924 4.6380 -0.0005 33 1 5.4479 4.0510 -1.6649 34 1 6.5923 2.6703 -1.9568 35 1 8.3637 2.2274 -0.2446 36 1 12.1413 4.5464 1.0273 37 1 14.4969 2.7082 2.3518 38 1 15.0470 2.2107 0.7337 39 1 14.5818 3.9022 1.0344 40 1 13.6534 -0.1891 1.6665 41 1 15.2842 -0.3584 -0.0705 42 1 12.2809 -0.9773 -1.6263 43 1 13.4393 -2.5471 -0.1727 44 1 6.5558 3.4151 1.7991 45 1 5.4221 4.5758 0.9814 46 1 4.0211 0.3798 -0.0099 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_6739946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:42:24 Heat of formation + Delta-G solvation = -12.564242 kcal Electronic energy + Delta-G solvation = -28411.689372 eV Core-core repulsion = 24360.979989 eV Total energy + Delta-G solvation = -4050.709384 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.70552 -40.93775 -40.06553 -39.38644 -37.89269 -37.49021 -34.64378 -32.47064 -31.94795 -30.89045 -30.17260 -28.22890 -27.09358 -26.68036 -25.60128 -24.31320 -23.54630 -22.36299 -21.96626 -20.41648 -19.86223 -19.33304 -18.68582 -18.56291 -17.36559 -17.21982 -17.10961 -16.85697 -16.65085 -16.34144 -16.03324 -15.97517 -15.73622 -15.21769 -14.93520 -14.71464 -14.53414 -14.41376 -14.30729 -14.19139 -13.99932 -13.48992 -13.32432 -13.24426 -13.18350 -13.01928 -12.97350 -12.65949 -12.57678 -12.28903 -12.23254 -12.10392 -11.93006 -11.64156 -11.57579 -11.31432 -11.24750 -10.66240 -10.25303 -9.73815 -9.71542 -9.37390 -9.13346 -5.12055 -0.67446 0.26269 0.34750 0.50071 0.65433 1.07597 1.29902 1.53267 1.87378 1.93708 2.04201 2.37160 2.75740 3.22997 3.45309 3.63267 3.66902 3.71571 3.76301 3.89807 3.96935 4.10389 4.12386 4.20750 4.29799 4.35122 4.36258 4.39216 4.40785 4.56211 4.57624 4.62667 4.65187 4.72508 4.78878 4.79942 4.83977 4.89491 4.97399 5.00804 5.03275 5.11276 5.13582 5.36410 5.38099 5.45700 5.47203 5.53320 5.71638 5.84521 6.32013 6.45772 6.54949 7.00060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.109 3.891 4 C -0.222 4.222 5 C -0.084 4.084 6 C -0.160 4.160 7 C -0.033 4.033 8 C -0.068 4.068 9 H 0.111 0.889 10 C -0.124 4.124 11 C 0.114 3.886 12 H 0.092 0.908 13 N -0.697 5.697 14 C 0.594 3.406 15 O -0.569 6.569 16 C -0.286 4.286 17 C -0.059 4.059 18 C -0.106 4.106 19 C -0.102 4.102 20 C -0.202 4.202 21 C -0.040 4.040 22 O -0.544 6.544 23 Si 0.718 3.282 24 S 0.257 5.743 25 C -0.139 4.139 26 C -0.164 4.164 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.399 0.601 42 H -0.280 1.280 43 H -0.253 1.253 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 -5.655 0.973 6.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.064 3.936 4 C -0.241 4.241 5 C -0.102 4.102 6 C -0.178 4.178 7 C -0.033 4.033 8 C -0.086 4.086 9 H 0.129 0.871 10 C -0.162 4.162 11 C 0.009 3.991 12 H 0.111 0.889 13 N -0.348 5.348 14 C 0.382 3.618 15 O -0.449 6.449 16 C -0.405 4.405 17 C -0.094 4.094 18 C -0.118 4.118 19 C -0.160 4.160 20 C -0.322 4.322 21 C -0.151 4.151 22 O -0.355 6.355 23 Si 0.619 3.381 24 S 0.526 5.474 25 C -0.177 4.177 26 C -0.183 4.183 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.248 0.752 36 H 0.164 0.836 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.251 0.749 42 H -0.206 1.206 43 H -0.177 1.177 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.487 -6.204 -0.058 7.117 hybrid contribution 1.915 0.967 0.240 2.159 sum -1.572 -5.237 0.182 5.471 Atomic orbital electron populations 1.23287 0.76711 1.05359 1.02064 1.86039 1.23214 1.27276 1.88787 1.19290 0.92857 0.84618 0.96796 1.21483 1.00905 0.92455 1.09240 1.21235 0.95010 0.97535 0.96462 1.21176 0.93799 0.98798 1.04063 1.19585 0.95390 0.91893 0.96462 1.21628 0.90043 0.99603 0.97364 0.87090 1.23399 0.96763 0.99966 0.96052 1.21936 0.82942 0.96401 0.97854 0.88945 1.45443 1.08095 1.12000 1.69231 1.17120 0.82546 0.86250 0.75898 1.90825 1.85772 1.15727 1.52619 1.24621 0.98267 0.99342 1.18301 1.20768 0.90464 1.01287 0.96835 1.18799 0.98521 0.91502 1.03016 1.20705 0.90693 1.02504 1.02138 1.23619 1.00314 0.99172 1.09058 1.24257 0.88173 0.99803 1.02852 1.86531 1.27564 1.42718 1.78667 0.94728 0.87222 0.75266 0.80895 1.82328 1.01943 1.00724 1.62384 1.23558 0.97619 0.98912 0.97660 1.20516 0.91440 0.98904 1.07423 0.91890 0.86675 0.91932 0.84347 0.84005 0.84300 0.87553 0.89399 0.75205 0.83646 0.90645 0.89231 0.91806 0.87053 0.74875 1.20574 1.17703 0.91142 0.87892 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.67 10.50 -92.37 -0.97 -2.64 16 3 C 0.11 0.52 6.69 22.51 0.15 0.67 16 4 C -0.22 -0.47 9.04 22.36 0.20 -0.27 16 5 C -0.08 -0.04 10.04 22.25 0.22 0.18 16 6 C -0.16 0.01 8.61 22.28 0.19 0.20 16 7 C -0.03 -0.01 5.29 -19.88 -0.11 -0.12 16 8 C -0.07 0.22 3.85 -11.01 -0.04 0.18 16 9 H 0.11 -0.61 8.09 -2.39 -0.02 -0.63 16 10 C -0.12 0.50 7.29 31.12 0.23 0.72 16 11 C 0.11 -0.02 4.32 45.52 0.20 0.18 16 12 H 0.09 0.34 7.46 -2.39 -0.02 0.33 16 13 N -0.70 -0.48 5.26 -444.08 -2.33 -2.81 16 14 C 0.59 4.50 7.78 86.42 0.67 5.18 16 15 O -0.57 -8.93 16.44 -4.35 -0.07 -9.00 16 16 C -0.29 -1.46 6.45 24.08 0.16 -1.30 16 17 C -0.06 -0.38 9.78 21.71 0.21 -0.17 16 18 C -0.11 -0.43 5.75 -21.05 -0.12 -0.55 16 19 C -0.10 -0.18 9.76 71.24 0.70 0.51 16 20 C -0.20 -0.24 5.65 24.68 0.14 -0.10 16 21 C -0.04 0.13 2.67 71.24 0.19 0.32 16 22 O -0.54 0.95 10.24 -148.98 -1.53 -0.57 16 23 Si 0.72 -3.18 30.96 68.60 2.12 -1.06 16 24 S 0.26 -0.35 19.33 -56.49 -1.09 -1.44 16 25 C -0.14 0.23 7.25 31.12 0.23 0.45 16 26 C -0.16 -0.52 9.65 22.37 0.22 -0.30 16 27 H 0.06 -0.25 7.66 -2.39 -0.02 -0.27 16 28 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.06 -0.25 7.66 -2.39 -0.02 -0.26 16 30 H 0.14 -0.19 6.30 -2.91 -0.02 -0.21 16 31 H 0.14 -0.52 8.06 -2.91 -0.02 -0.54 16 32 H 0.14 -0.48 6.66 -2.91 -0.02 -0.50 16 33 H 0.11 -0.48 7.72 -2.39 -0.02 -0.50 16 34 H 0.09 -0.47 8.14 -2.38 -0.02 -0.49 16 35 H 0.41 -1.87 7.81 -92.71 -0.72 -2.59 16 36 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 37 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.09 0.19 5.51 -2.39 -0.01 0.17 16 39 H 0.06 0.11 8.11 -2.38 -0.02 0.09 16 40 H 0.11 -0.85 7.96 -2.39 -0.02 -0.87 16 41 H 0.40 -4.01 8.74 -74.05 -0.65 -4.66 16 42 H -0.28 -0.80 7.11 99.48 0.71 -0.09 16 43 H -0.25 0.44 7.11 99.48 0.71 1.15 16 44 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.10 -0.26 6.32 -2.38 -0.02 -0.28 16 46 H 0.13 0.15 8.05 -2.91 -0.02 0.13 16 Total: 0.00 -20.79 389.37 0.37 -20.42 By element: Atomic # 1 Polarization: -9.45 SS G_CDS: -0.30 Total: -9.75 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.54 Total: 6.85 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -2.33 Total: -2.81 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -2.57 Total: -12.20 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.12 Total: -1.06 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.09 Total: -1.44 kcal Total: -20.79 0.37 -20.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_6739946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.854 kcal (2) G-P(sol) polarization free energy of solvation -20.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds