Wall clock time and date at job start Sat Mar 6 2021 14:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00120 * 2 1 4 4 C 1.38708 * 120.05097 * 180.29448 * 3 2 1 5 5 C 1.38167 * 119.93875 * 180.21033 * 4 3 2 6 6 C 1.50698 * 119.97381 * 179.78989 * 5 4 3 7 7 H 1.08999 * 112.90521 * 10.98325 * 6 5 4 8 8 C 1.53781 * 113.61565 * 142.22981 * 6 5 4 9 9 C 1.54049 * 87.08031 * 139.97986 * 8 6 5 10 10 H 1.08992 * 113.69868 * 220.05225 * 9 8 6 11 11 N 1.46506 * 113.61276 * 89.07129 * 9 8 6 12 12 C 1.34772 * 120.00033 * 107.61836 * 11 9 8 13 13 O 1.21642 * 119.99866 * 0.02562 * 12 11 9 14 14 C 1.47183 * 120.00445 * 180.02562 * 12 11 9 15 15 C 1.36013 * 123.45804 * 0.02800 * 14 12 11 16 16 S 1.70446 * 110.81518 * 179.97438 * 15 14 12 17 17 C 1.75504 * 92.44743 * 359.97438 * 16 15 14 18 18 C 1.50698 * 124.71284 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47328 * 244.98011 * 18 17 16 20 20 Si 1.86308 * 109.46922 * 4.98224 * 18 17 16 21 21 C 1.32773 * 110.57264 * 359.73967 * 17 16 15 22 22 C 1.53781 * 113.61793 * 239.72896 * 6 5 4 23 23 C 1.38247 * 120.05557 * 359.52099 * 5 4 3 24 24 C 1.38286 * 120.11126 * 0.22726 * 23 5 4 25 25 C 1.38123 * 120.05628 * 0.02562 * 24 23 5 26 26 H 1.09005 * 109.47106 * 59.99845 * 1 2 3 27 27 H 1.09005 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47138 * 299.99946 * 1 2 3 29 29 H 1.07998 * 120.03675 * 359.97438 * 4 3 2 30 30 H 1.09005 * 113.61471 * 254.53569 * 8 6 5 31 31 H 1.08996 * 113.61178 * 25.34912 * 8 6 5 32 32 H 0.97002 * 119.99888 * 287.62233 * 11 9 8 33 33 H 1.08002 * 124.59482 * 359.97438 * 15 14 12 34 34 H 1.09006 * 109.47014 * 124.97719 * 18 17 16 35 35 H 0.96698 * 113.99255 * 180.02562 * 19 18 17 36 36 H 1.48503 * 109.99931 * 299.99466 * 20 18 17 37 37 H 1.48493 * 110.00248 * 61.31856 * 20 18 17 38 38 H 1.08001 * 123.45558 * 180.22820 * 21 17 16 39 39 H 1.09002 * 113.61445 * 334.56799 * 22 6 5 40 40 H 1.09002 * 113.61408 * 105.38530 * 22 6 5 41 41 H 1.07999 * 119.94455 * 180.24921 * 23 5 4 42 42 H 1.08001 * 119.97129 * 180.02562 * 24 23 5 43 43 H 1.08003 * 120.02668 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2847 -0.0062 5 6 4.0560 2.5170 -0.0018 6 6 5.5608 2.5980 -0.0037 7 1 6.0371 1.6375 -0.1999 8 6 6.1147 3.7471 -0.8625 9 6 7.1535 3.9744 0.2521 10 1 7.3501 5.0262 0.4598 11 7 8.3780 3.1882 0.0823 12 6 9.5228 3.7953 -0.2880 13 8 9.5394 4.9963 -0.4809 14 6 10.7528 3.0054 -0.4592 15 6 10.8140 1.6609 -0.2630 16 16 12.3897 1.0779 -0.5502 17 6 12.9907 2.6785 -0.9465 18 6 14.4126 2.9888 -1.3377 19 8 15.0096 3.8221 -0.3421 20 14 15.3779 1.4016 -1.4796 21 6 12.0172 3.5772 -0.8596 22 6 6.1396 3.3351 1.2156 23 6 3.3019 3.6757 -0.0012 24 6 1.9209 3.6047 -0.0003 25 6 1.2914 2.3752 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0206 0.3798 -0.0106 30 1 6.5509 3.4166 -1.8053 31 1 5.4169 4.5752 -0.9864 32 1 8.3647 2.2306 0.2364 33 1 9.9775 1.0459 0.0344 34 1 14.4208 3.5060 -2.2972 35 1 15.9274 4.0624 -0.5293 36 1 15.3744 0.6869 -0.1780 37 1 14.7861 0.5397 -2.5341 38 1 12.1574 4.6285 -1.0635 39 1 5.4492 4.0513 1.6611 40 1 6.5946 2.6719 1.9512 41 1 3.7923 4.6379 -0.0018 42 1 1.3340 4.5113 -0.0003 43 1 0.2128 2.3203 0.0008 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10812630_6894386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 14:42:27 Heat of formation + Delta-G solvation = -11.974291 kcal Electronic energy + Delta-G solvation = -26296.874377 eV Core-core repulsion = 22401.728195 eV Total energy + Delta-G solvation = -3895.146182 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.77493 -41.01788 -39.92793 -38.68385 -37.88914 -37.18147 -34.68785 -32.35543 -31.78312 -30.86697 -28.26300 -27.02246 -26.75544 -26.65134 -25.18176 -23.60188 -22.45156 -22.07767 -20.61414 -20.37042 -18.82545 -18.68384 -18.41130 -18.19327 -17.26529 -17.01919 -16.82789 -16.69308 -16.36434 -16.19604 -15.82539 -15.78219 -15.33323 -14.91892 -14.47275 -14.43724 -14.28034 -14.05829 -13.95849 -13.93448 -13.78730 -13.50101 -13.28651 -13.20651 -12.71675 -12.67667 -12.43123 -12.30064 -12.14055 -12.10187 -11.68028 -11.61656 -11.31031 -11.16873 -10.46162 -10.25361 -10.04876 -9.77642 -9.62331 -9.18006 -5.19675 -0.47060 0.27164 0.29943 0.45320 0.61167 0.72568 1.19046 1.59885 1.87996 1.96971 2.15112 2.32892 2.71034 3.32078 3.41577 3.63641 3.68799 3.69577 3.79610 3.85079 3.92018 3.94335 4.06000 4.16032 4.17098 4.25521 4.32814 4.36071 4.41127 4.51891 4.58199 4.59989 4.62403 4.68961 4.74760 4.79657 4.89771 4.93488 4.97855 5.04844 5.07874 5.10343 5.31719 5.44577 5.49505 5.66945 5.79892 6.36845 6.41291 6.83889 7.05249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.166 4.166 5 C -0.034 4.034 6 C -0.067 4.067 7 H 0.109 0.891 8 C -0.140 4.140 9 C 0.114 3.886 10 H 0.090 0.910 11 N -0.693 5.693 12 C 0.581 3.419 13 O -0.577 6.577 14 C -0.178 4.178 15 C -0.183 4.183 16 S 0.184 5.816 17 C -0.211 4.211 18 C -0.050 4.050 19 O -0.564 6.564 20 Si 0.759 3.241 21 C -0.070 4.070 22 C -0.122 4.122 23 C -0.161 4.161 24 C -0.083 4.083 25 C -0.221 4.221 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.414 0.586 33 H 0.206 0.794 34 H 0.101 0.899 35 H 0.406 0.594 36 H -0.271 1.271 37 H -0.264 1.264 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -3.549 -0.751 3.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.184 4.184 5 C -0.034 4.034 6 C -0.085 4.085 7 H 0.127 0.873 8 C -0.178 4.178 9 C 0.009 3.991 10 H 0.108 0.892 11 N -0.344 5.344 12 C 0.368 3.632 13 O -0.458 6.458 14 C -0.195 4.195 15 C -0.321 4.321 16 S 0.450 5.550 17 C -0.327 4.327 18 C -0.161 4.161 19 O -0.375 6.375 20 Si 0.660 3.340 21 C -0.099 4.099 22 C -0.160 4.160 23 C -0.179 4.179 24 C -0.101 4.101 25 C -0.240 4.240 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.251 0.749 33 H 0.223 0.777 34 H 0.119 0.881 35 H 0.257 0.743 36 H -0.197 1.197 37 H -0.189 1.189 38 H 0.162 0.838 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.044 -5.267 -0.486 5.392 hybrid contribution -1.648 1.483 -0.022 2.217 sum -0.604 -3.784 -0.509 3.865 Atomic orbital electron populations 1.23297 0.76638 1.05398 1.02115 1.86039 1.23295 1.27288 1.88788 1.19286 0.92821 0.84656 0.96776 1.20498 0.91495 0.98826 1.07607 1.19598 0.95426 0.91906 0.96511 1.21601 0.90016 0.99452 0.97444 0.87284 1.23604 0.97713 0.98881 0.97601 1.21946 0.83101 0.96420 0.97618 0.89194 1.45385 1.07849 1.12198 1.69013 1.17760 0.83205 0.86436 0.75802 1.90792 1.86146 1.16264 1.52554 1.20168 0.94793 0.93412 1.11177 1.26138 1.04517 0.97976 1.03461 1.83201 1.00478 1.07989 1.63332 1.23800 0.99817 0.97098 1.11983 1.24313 0.91034 1.06596 0.94185 1.86472 1.33343 1.70581 1.47058 0.93625 0.87658 0.73352 0.79354 1.21074 0.89931 1.00715 0.98204 1.23373 0.96763 0.99891 0.95975 1.21178 0.93840 0.98766 1.04070 1.21246 0.94972 0.97584 0.96340 1.21492 1.00950 0.92406 1.09150 0.91897 0.86654 0.91813 0.85031 0.91419 0.87989 0.74861 0.77696 0.88136 0.74253 1.19651 1.18893 0.83847 0.87671 0.89404 0.84296 0.83881 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.88 10.50 -92.45 -0.97 -2.85 16 3 C 0.11 0.58 6.69 22.50 0.15 0.73 16 4 C -0.17 -0.65 9.65 22.37 0.22 -0.43 16 5 C -0.03 -0.04 5.29 -19.88 -0.11 -0.14 16 6 C -0.07 0.18 3.86 -11.01 -0.04 0.14 16 7 H 0.11 -0.53 8.09 -2.39 -0.02 -0.55 16 8 C -0.14 0.12 7.26 31.21 0.23 0.35 16 9 C 0.11 0.04 4.34 45.61 0.20 0.24 16 10 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 11 N -0.69 -0.41 5.23 -443.08 -2.32 -2.73 16 12 C 0.58 4.78 7.79 86.59 0.67 5.45 16 13 O -0.58 -9.75 16.40 -4.16 -0.07 -9.82 16 14 C -0.18 -1.05 5.98 -19.87 -0.12 -1.16 16 15 C -0.18 0.03 10.38 67.30 0.70 0.73 16 16 S 0.18 0.32 20.20 -56.49 -1.14 -0.82 16 17 C -0.21 -1.03 5.69 24.51 0.14 -0.89 16 18 C -0.05 0.02 2.93 71.24 0.21 0.23 16 19 O -0.56 -0.31 12.86 -148.98 -1.92 -2.23 16 20 Si 0.76 -2.68 30.92 68.60 2.12 -0.56 16 21 C -0.07 -0.56 9.95 22.67 0.23 -0.34 16 22 C -0.12 0.44 7.28 31.12 0.23 0.66 16 23 C -0.16 -0.09 8.60 22.28 0.19 0.11 16 24 C -0.08 -0.07 10.04 22.25 0.22 0.15 16 25 C -0.22 -0.56 9.04 22.36 0.20 -0.36 16 26 H 0.06 -0.22 7.66 -2.38 -0.02 -0.24 16 27 H 0.12 -0.62 8.14 -2.38 -0.02 -0.64 16 28 H 0.06 -0.24 7.66 -2.38 -0.02 -0.25 16 29 H 0.13 0.28 8.05 -2.91 -0.02 0.26 16 30 H 0.07 0.07 8.14 -2.38 -0.02 0.06 16 31 H 0.10 -0.17 6.31 -2.39 -0.02 -0.18 16 32 H 0.41 -2.38 7.20 -92.71 -0.67 -3.04 16 33 H 0.21 -1.69 7.01 -2.91 -0.02 -1.71 16 34 H 0.10 -0.40 7.96 -2.38 -0.02 -0.42 16 35 H 0.41 -4.24 8.74 -74.06 -0.65 -4.89 16 36 H -0.27 -0.69 7.11 99.48 0.71 0.02 16 37 H -0.26 -0.14 7.11 99.48 0.71 0.57 16 38 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.10 -0.41 7.72 -2.39 -0.02 -0.43 16 40 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.14 -0.39 6.65 -2.91 -0.02 -0.41 16 42 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 43 H 0.14 -0.15 6.30 -2.91 -0.02 -0.17 16 Total: 0.00 -23.60 372.27 -0.08 -23.68 By element: Atomic # 1 Polarization: -10.98 SS G_CDS: -0.21 Total: -11.20 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 4.43 Total: 6.52 kcal Atomic # 7 Polarization: -0.41 SS G_CDS: -2.32 Total: -2.73 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -2.95 Total: -14.90 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.12 Total: -0.56 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.14 Total: -0.82 kcal Total: -23.60 -0.08 -23.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10812630_6894386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.705 kcal (2) G-P(sol) polarization free energy of solvation -23.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds