Wall clock time and date at job start Sat Mar 6 2021 15:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47120 * 2 1 4 4 C 1.35897 * 117.00187 * 84.94804 * 3 2 1 5 5 C 1.38729 * 120.05244 * 174.27697 * 4 3 2 6 6 C 1.38149 * 119.93985 * 179.74404 * 5 4 3 7 7 C 1.38271 * 120.05647 * 0.50762 * 6 5 4 8 8 C 1.50696 * 119.94279 * 179.74427 * 7 6 5 9 9 O 1.42898 * 109.47229 * 245.02152 * 8 7 6 10 10 Si 1.86299 * 109.47281 * 5.02369 * 8 7 6 11 11 H 1.48492 * 109.47382 * 59.99923 * 10 8 7 12 12 H 1.48505 * 109.47010 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46983 * 299.99566 * 10 8 7 14 14 C 1.38264 * 120.11117 * 359.76729 * 7 6 5 15 15 C 1.38146 * 120.05205 * 359.97438 * 14 7 6 16 16 C 1.50695 * 109.47015 * 239.99705 * 2 1 3 17 17 O 1.21283 * 120.00027 * 119.99939 * 16 2 1 18 18 N 1.34778 * 120.00363 * 299.99868 * 16 2 1 19 19 C 1.46494 * 120.00339 * 179.72393 * 18 16 2 20 20 C 1.50701 * 109.47368 * 180.02562 * 19 18 16 21 21 C 1.38239 * 120.00156 * 269.73295 * 20 19 18 22 22 C 1.38238 * 119.99845 * 179.76585 * 21 20 19 23 23 C 1.38230 * 120.00021 * 0.50195 * 22 21 20 24 24 Si 1.86795 * 120.00008 * 179.72553 * 23 22 21 25 25 C 1.86304 * 109.47240 * 270.02186 * 24 23 22 26 26 C 1.86304 * 109.47167 * 30.02266 * 24 23 22 27 27 C 1.86301 * 109.47433 * 150.02365 * 24 23 22 28 28 C 1.38243 * 120.00190 * 359.74967 * 23 22 21 29 29 C 1.38229 * 119.99543 * 359.97438 * 28 23 22 30 30 H 1.09003 * 109.47423 * 299.99936 * 1 2 3 31 31 H 1.08998 * 109.47346 * 60.00232 * 1 2 3 32 32 H 1.09001 * 109.47427 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46698 * 119.99975 * 2 1 3 34 34 H 1.08000 * 120.03294 * 359.97438 * 5 4 3 35 35 H 1.08004 * 119.97436 * 180.22916 * 6 5 4 36 36 H 1.08997 * 109.46954 * 125.02243 * 8 7 6 37 37 H 0.96697 * 114.00078 * 180.02562 * 9 8 7 38 38 H 1.07995 * 119.97504 * 179.97438 * 14 7 6 39 39 H 1.08007 * 120.02264 * 179.97438 * 15 14 7 40 40 H 0.97008 * 119.99749 * 0.02562 * 18 16 2 41 41 H 1.08998 * 109.47599 * 300.00362 * 19 18 16 42 42 H 1.09003 * 109.47279 * 60.00328 * 19 18 16 43 43 H 1.07997 * 119.99797 * 359.97438 * 21 20 19 44 44 H 1.08003 * 119.99829 * 180.22755 * 22 21 20 45 45 H 1.09001 * 109.46805 * 60.00069 * 25 24 23 46 46 H 1.08997 * 109.47193 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.46748 * 299.99924 * 25 24 23 48 48 H 1.09002 * 109.46676 * 59.99965 * 26 24 23 49 49 H 1.08997 * 109.47116 * 179.97438 * 26 24 23 50 50 H 1.09000 * 109.46543 * 299.99923 * 26 24 23 51 51 H 1.09001 * 109.47361 * 59.99582 * 27 24 23 52 52 H 1.08997 * 109.47533 * 179.97438 * 27 24 23 53 53 H 1.09002 * 109.46675 * 300.00089 * 27 24 23 54 54 H 1.07994 * 120.00056 * 179.97438 * 28 23 22 55 55 H 1.08010 * 119.99933 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1115 1.9645 1.2061 5 6 2.6776 3.2281 1.2929 6 6 2.7785 3.8556 2.5195 7 6 2.3254 3.2211 3.6614 8 6 2.4420 3.9056 4.9989 9 8 3.3411 3.1719 5.8327 10 14 3.0908 5.6351 4.7569 11 1 2.1565 6.3976 3.8904 12 1 3.2062 6.3094 6.0749 13 1 4.4275 5.5767 4.1126 14 6 1.7660 1.9594 3.5783 15 6 1.6580 1.3299 2.3534 16 6 2.0323 -0.7105 -1.2304 17 8 2.7296 -0.1211 -2.0288 18 7 1.7068 -2.0008 -1.4437 19 6 2.1900 -2.6897 -2.6428 20 6 1.6883 -4.1107 -2.6424 21 6 2.4411 -5.1094 -2.0533 22 6 1.9785 -6.4121 -2.0487 23 6 0.7682 -6.7178 -2.6423 24 14 0.1468 -8.4794 -2.6429 25 6 0.7620 -9.3545 -4.1682 26 6 0.7748 -9.3599 -1.1259 27 6 -1.7162 -8.4808 -2.6351 28 6 0.0179 -5.7201 -3.2361 29 6 0.4777 -4.4165 -3.2356 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 0.8900 34 1 3.0357 3.7223 0.4019 35 1 3.2157 4.8409 2.5872 36 1 1.4609 3.9485 5.4718 37 1 3.4643 3.5557 6.7117 38 1 1.4133 1.4656 4.4716 39 1 1.2213 0.3441 2.2890 40 1 1.1488 -2.4721 -0.8053 41 1 1.8223 -2.1752 -3.5306 42 1 3.2801 -2.6889 -2.6479 43 1 3.3889 -4.8712 -1.5937 44 1 2.5649 -7.1917 -1.5852 45 1 1.8520 -9.3537 -4.1727 46 1 0.3990 -10.3823 -4.1687 47 1 0.3945 -8.8393 -5.0557 48 1 0.4148 -8.8479 -0.2335 49 1 0.4118 -10.3877 -1.1260 50 1 1.8648 -9.3591 -1.1306 51 1 -2.0837 -7.9656 -3.5226 52 1 -2.0788 -9.5087 -2.6359 53 1 -2.0761 -7.9688 -1.7427 54 1 -0.9275 -5.9590 -3.7002 55 1 -0.1083 -3.6369 -3.6998 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_10157680.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:42:08 Heat of formation + Delta-G solvation = -92.354444 kcal Electronic energy + Delta-G solvation = -31962.137018 eV Core-core repulsion = 27666.834844 eV Total energy + Delta-G solvation = -4295.302174 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.182 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.84083 -40.79373 -39.94419 -38.96733 -37.23055 -36.13931 -33.70678 -32.20254 -32.05582 -31.85753 -31.31775 -29.41030 -28.27603 -28.26505 -27.32640 -26.57782 -25.14156 -24.09054 -23.44825 -22.38581 -22.08525 -21.42460 -19.53450 -18.91314 -18.39796 -17.47569 -17.28576 -17.00907 -16.81394 -16.53849 -16.37306 -16.12401 -15.86553 -15.55953 -15.41531 -14.99594 -14.73856 -14.39302 -14.32849 -14.17553 -14.13749 -14.02095 -13.93916 -13.89726 -13.86144 -13.71660 -13.50248 -13.44964 -13.27566 -13.13938 -13.09715 -12.95383 -12.93599 -12.66355 -12.41003 -12.14970 -12.08319 -11.91836 -11.88460 -11.67635 -11.13526 -10.87302 -10.75320 -10.74245 -10.33569 -10.28109 -10.07281 -9.78894 -9.65795 -9.23569 0.16767 0.21121 0.30271 0.53761 1.18419 1.33375 1.44671 1.49911 1.51840 1.85845 1.91729 2.04268 2.09754 2.47524 2.60070 2.67997 2.97115 3.43462 3.50424 3.62355 3.65692 3.77230 3.81026 3.84350 3.90803 3.96713 4.16548 4.23736 4.27985 4.33618 4.48124 4.54747 4.56286 4.58774 4.63199 4.66631 4.75655 4.84925 4.85162 4.89740 4.91050 4.91479 4.91971 4.95671 5.01457 5.05952 5.14325 5.17179 5.18975 5.25891 5.41661 5.46809 5.59888 5.60360 5.63101 5.64090 5.68628 5.73027 6.13565 6.20845 6.37765 6.84808 6.99716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.065 3.935 3 O -0.312 6.312 4 C 0.119 3.881 5 C -0.161 4.161 6 C -0.093 4.093 7 C -0.126 4.126 8 C -0.071 4.071 9 O -0.563 6.563 10 Si 0.968 3.032 11 H -0.260 1.260 12 H -0.253 1.253 13 H -0.275 1.275 14 C -0.052 4.052 15 C -0.206 4.206 16 C 0.516 3.484 17 O -0.570 6.570 18 N -0.703 5.703 19 C 0.165 3.835 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.372 4.372 24 Si 1.127 2.873 25 C -0.467 4.467 26 C -0.462 4.462 27 C -0.462 4.462 28 C -0.100 4.100 29 C -0.120 4.120 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.398 0.602 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.418 0.582 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.126 0.874 44 H 0.137 0.863 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.071 0.929 52 H 0.073 0.927 53 H 0.070 0.930 54 H 0.138 0.862 55 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 -5.602 5.070 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 O -0.225 6.225 4 C 0.074 3.926 5 C -0.180 4.180 6 C -0.111 4.111 7 C -0.126 4.126 8 C -0.182 4.182 9 O -0.372 6.372 10 Si 0.793 3.207 11 H -0.184 1.184 12 H -0.177 1.177 13 H -0.201 1.201 14 C -0.070 4.070 15 C -0.224 4.224 16 C 0.302 3.698 17 O -0.448 6.448 18 N -0.357 5.357 19 C 0.042 3.958 20 C -0.108 4.108 21 C -0.140 4.140 22 C -0.118 4.118 23 C -0.412 4.412 24 Si 1.314 2.686 25 C -0.573 4.573 26 C -0.569 4.569 27 C -0.569 4.569 28 C -0.118 4.118 29 C -0.139 4.139 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.118 0.882 37 H 0.248 0.752 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.255 0.745 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.144 0.856 44 H 0.155 0.845 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.090 0.910 52 H 0.092 0.908 53 H 0.090 0.910 54 H 0.156 0.844 55 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.729 -4.563 3.646 7.515 hybrid contribution 0.012 0.102 0.402 0.415 sum -4.716 -4.461 4.047 7.650 Atomic orbital electron populations 1.22373 0.90291 1.05630 1.04596 1.22403 0.97296 0.82132 0.97600 1.86177 1.81552 1.26932 1.27885 1.19211 0.95956 0.93020 0.84439 1.20506 1.04124 0.94420 0.98915 1.20961 0.98289 0.99936 0.91868 1.19490 1.02564 0.96828 0.93716 1.24596 0.97832 1.05064 0.90715 1.86461 1.65961 1.54648 1.30115 0.85447 0.79618 0.74962 0.80631 1.18415 1.17674 1.20059 1.21052 0.95141 0.93177 0.97600 1.21568 1.06430 1.02642 0.91804 1.20562 0.79807 0.82301 0.87129 1.90754 1.39025 1.66961 1.48032 1.45802 1.53666 1.10556 1.25660 1.20152 0.99093 0.88823 0.87752 1.19751 0.96129 0.93839 1.01033 1.21347 0.99892 0.93494 0.99258 1.21372 0.96288 0.96204 0.97925 1.27944 0.98151 1.16153 0.98904 0.77154 0.65388 0.60345 0.65716 1.26345 1.06275 1.08393 1.16274 1.26281 1.06581 1.08400 1.15686 1.26272 1.21124 1.04796 1.04701 1.21379 1.00088 0.92452 0.97832 1.21346 0.95490 0.97748 0.99274 0.89314 0.91956 0.87414 0.85683 0.85004 0.85069 0.88246 0.75195 0.83272 0.82426 0.74471 0.91190 0.91316 0.85643 0.84494 0.91541 0.90827 0.91510 0.91059 0.90830 0.91006 0.90956 0.90831 0.91035 0.84409 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.77 9.07 71.98 0.65 1.42 16 2 C 0.06 0.08 2.64 29.85 0.08 0.15 16 3 O -0.31 -2.82 9.33 -73.36 -0.68 -3.50 16 4 C 0.12 0.80 6.60 22.50 0.15 0.95 16 5 C -0.16 -1.23 9.99 22.37 0.22 -1.00 16 6 C -0.09 -0.51 8.66 22.26 0.19 -0.32 16 7 C -0.13 -0.43 5.38 -19.85 -0.11 -0.54 16 8 C -0.07 0.08 2.79 71.23 0.20 0.28 16 9 O -0.56 0.19 12.81 -148.98 -1.91 -1.72 16 10 Si 0.97 -0.26 25.14 68.60 1.72 1.46 16 11 H -0.26 -0.35 7.11 99.48 0.71 0.36 16 12 H -0.25 0.28 7.11 99.48 0.71 0.98 16 13 H -0.28 -1.14 7.04 99.48 0.70 -0.44 16 14 C -0.05 -0.07 9.68 22.25 0.22 0.14 16 15 C -0.21 -0.29 8.24 22.37 0.18 -0.10 16 16 C 0.52 3.10 7.23 87.66 0.63 3.73 16 17 O -0.57 -9.71 16.50 16.00 0.26 -9.45 16 18 N -0.70 0.47 5.44 -466.80 -2.54 -2.07 16 19 C 0.16 0.24 5.80 85.63 0.50 0.73 16 20 C -0.11 0.05 5.25 -19.86 -0.10 -0.05 16 21 C -0.12 0.12 9.70 22.27 0.22 0.33 16 22 C -0.10 0.24 9.29 22.27 0.21 0.45 16 23 C -0.37 1.29 4.59 22.27 0.10 1.39 16 24 Si 1.13 -8.50 12.32 68.60 0.85 -7.65 16 25 C -0.47 2.05 8.65 113.37 0.98 3.03 16 26 C -0.46 2.80 8.53 113.37 0.97 3.77 16 27 C -0.46 2.87 8.53 113.37 0.97 3.84 16 28 C -0.10 0.26 9.29 22.27 0.21 0.47 16 29 C -0.12 0.16 9.70 22.27 0.22 0.37 16 30 H 0.09 -0.52 6.91 -2.39 -0.02 -0.53 16 31 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.11 -1.12 7.56 -2.39 -0.02 -1.14 16 33 H 0.13 -0.53 6.31 -2.38 -0.02 -0.54 16 34 H 0.13 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.13 0.43 4.86 -2.91 -0.01 0.41 16 36 H 0.10 -0.60 7.96 -2.39 -0.02 -0.61 16 37 H 0.40 -3.73 8.74 -74.06 -0.65 -4.38 16 38 H 0.15 -0.42 8.06 -2.91 -0.02 -0.45 16 39 H 0.16 -0.78 5.43 -2.91 -0.02 -0.79 16 40 H 0.42 -2.84 7.88 -92.70 -0.73 -3.57 16 41 H 0.07 0.24 8.08 -2.39 -0.02 0.22 16 42 H 0.07 0.25 8.08 -2.39 -0.02 0.23 16 43 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 44 H 0.14 -0.82 7.43 -2.91 -0.02 -0.84 16 45 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 46 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 47 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 48 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 49 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 50 H 0.07 -0.44 7.69 -2.39 -0.02 -0.46 16 51 H 0.07 -0.47 7.69 -2.39 -0.02 -0.48 16 52 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 53 H 0.07 -0.43 7.96 -2.39 -0.02 -0.44 16 54 H 0.14 -0.87 7.43 -2.91 -0.02 -0.89 16 55 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -24.04 450.60 4.65 -19.39 By element: Atomic # 1 Polarization: -15.79 SS G_CDS: 0.27 Total: -15.52 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.68 Total: 19.05 kcal Atomic # 7 Polarization: 0.47 SS G_CDS: -2.54 Total: -2.07 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -2.33 Total: -14.66 kcal Atomic # 14 Polarization: -8.76 SS G_CDS: 2.57 Total: -6.19 kcal Total: -24.04 4.65 -19.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_10157680.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.964 kcal (2) G-P(sol) polarization free energy of solvation -24.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds