Wall clock time and date at job start Sat Mar 6 2021 15:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 N 1.46501 * 109.47472 * 270.28569 * 9 8 7 11 11 C 1.34772 * 120.00233 * 179.97438 * 10 9 8 12 12 O 1.21571 * 120.00237 * 359.97438 * 11 10 9 13 13 C 1.47691 * 120.00015 * 179.97438 * 11 10 9 14 14 C 1.39618 * 120.16648 * 359.71891 * 13 11 10 15 15 C 1.37898 * 119.87740 * 179.80925 * 14 13 11 16 16 C 1.50703 * 119.88959 * 180.18948 * 15 14 13 17 17 O 1.42894 * 109.47403 * 300.25906 * 16 15 14 18 18 Si 1.86307 * 109.46989 * 180.25791 * 16 15 14 19 19 H 1.48507 * 109.46733 * 60.00237 * 18 16 15 20 20 H 1.48502 * 109.47115 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47260 * 300.00320 * 18 16 15 22 22 C 1.38419 * 120.22123 * 0.45295 * 15 14 13 23 23 C 1.38256 * 120.33479 * 359.78135 * 22 15 14 24 24 C 1.38278 * 120.11296 * 0.02562 * 23 22 15 25 25 F 1.35110 * 120.10156 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 27 27 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 28 28 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 29 29 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 30 30 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 33 33 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 34 34 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 35 35 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 36 36 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 37 37 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 38 38 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 39 39 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 40 40 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 41 41 H 0.97001 * 119.99412 * 359.97438 * 10 9 8 42 42 H 1.08000 * 120.05927 * 0.02715 * 14 13 11 43 43 H 1.09002 * 109.46878 * 60.26230 * 16 15 14 44 44 H 0.96706 * 114.00331 * 300.00469 * 17 16 15 45 45 H 1.07998 * 119.83275 * 179.76333 * 22 15 14 46 46 H 1.07998 * 119.93862 * 179.97438 * 23 22 15 47 47 H 1.08001 * 120.00310 * 179.72161 * 26 8 7 48 48 H 1.07997 * 120.00460 * 359.97438 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 7 2.7675 -3.3550 5.8102 11 6 2.9760 -4.0212 6.9631 12 8 4.1102 -4.2405 7.3419 13 6 1.8266 -4.4850 7.7663 14 6 0.5226 -4.2300 7.3376 15 6 -0.5462 -4.6692 8.0901 16 6 -1.9539 -4.3978 7.6255 17 8 -2.1564 -2.9874 7.5175 18 14 -3.1611 -5.1062 8.8550 19 1 -2.9466 -4.4724 10.1808 20 1 -4.5483 -4.8383 8.3974 21 1 -2.9507 -6.5719 8.9672 22 6 -0.3304 -5.3537 9.2737 23 6 0.9571 -5.6068 9.7092 24 6 2.0390 -5.1762 8.9634 25 9 3.2971 -5.4233 9.3895 26 6 3.1758 -0.8214 3.8172 27 6 2.7155 -0.1696 2.6883 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1208 -0.3644 -2.4111 36 1 3.5741 -0.8786 -1.5208 37 1 2.5357 -2.7986 0.5826 38 1 3.3471 -3.9610 2.5960 39 1 4.5134 -3.7509 4.7175 40 1 4.5127 -2.2094 5.6076 41 1 1.8625 -3.1804 5.5078 42 1 0.3513 -3.6929 6.4164 43 1 -2.1113 -4.8631 6.6524 44 1 -2.0325 -2.5075 8.3479 45 1 -1.1721 -5.6914 9.8602 46 1 1.1181 -6.1411 10.6339 47 1 3.3551 -0.2660 4.7259 48 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10854838_12335834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:56:59 Heat of formation + Delta-G solvation = -107.394227 kcal Electronic energy + Delta-G solvation = -28968.678720 eV Core-core repulsion = 24833.027826 eV Total energy + Delta-G solvation = -4135.650894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.142 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.84574 -41.33818 -40.33233 -39.62348 -37.61144 -35.98200 -33.28774 -32.40989 -31.92831 -31.77343 -29.59640 -28.47940 -28.44714 -27.27139 -26.74041 -25.15141 -23.51408 -23.11859 -22.06642 -21.51564 -19.43820 -18.46564 -18.38209 -17.78690 -17.12133 -16.91026 -16.66917 -16.45867 -16.28548 -16.09289 -15.84013 -15.64638 -15.52300 -15.33074 -14.57758 -14.41730 -14.37119 -14.29370 -14.14153 -14.06001 -13.92665 -13.79455 -13.64357 -13.57272 -13.29690 -13.26226 -13.17075 -13.13643 -12.90507 -12.71425 -12.44153 -12.24553 -12.00055 -11.81336 -11.19824 -11.02093 -10.94256 -10.86531 -10.61426 -10.43005 -10.13285 -9.84514 -9.82713 -9.71046 -0.51937 -0.10824 0.14158 0.48791 0.97352 1.29232 1.35806 1.66382 1.66789 1.77724 1.80941 1.85078 2.13902 2.48971 2.50480 2.91422 3.02288 3.21365 3.35550 3.45679 3.51021 3.68816 3.87257 3.87457 4.00474 4.08172 4.31892 4.35395 4.44304 4.46493 4.63546 4.65456 4.66703 4.66916 4.68295 4.72162 4.72443 4.73319 4.75094 4.79191 4.85100 4.97140 5.02423 5.11568 5.28896 5.35655 5.42342 5.46737 5.50560 5.52964 5.58072 5.59748 6.06454 6.35941 6.38610 7.13226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.362 4.362 6 C -0.090 4.090 7 C -0.111 4.111 8 C -0.103 4.103 9 C 0.161 3.839 10 N -0.720 5.720 11 C 0.558 3.442 12 O -0.521 6.521 13 C -0.173 4.173 14 C -0.029 4.029 15 C -0.141 4.141 16 C -0.079 4.079 17 O -0.537 6.537 18 Si 0.946 3.054 19 H -0.249 1.249 20 H -0.250 1.250 21 H -0.248 1.248 22 C -0.068 4.068 23 C -0.156 4.156 24 C 0.167 3.833 25 F -0.111 7.111 26 C -0.111 4.111 27 C -0.090 4.090 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.402 0.598 42 H 0.141 0.859 43 H 0.123 0.877 44 H 0.378 0.622 45 H 0.136 0.864 46 H 0.149 0.851 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 1.304 -2.033 5.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.404 4.404 6 C -0.108 4.108 7 C -0.130 4.130 8 C -0.103 4.103 9 C 0.038 3.962 10 N -0.373 5.373 11 C 0.345 3.655 12 O -0.397 6.397 13 C -0.178 4.178 14 C -0.047 4.047 15 C -0.141 4.141 16 C -0.190 4.190 17 O -0.342 6.342 18 Si 0.768 3.232 19 H -0.172 1.172 20 H -0.173 1.173 21 H -0.172 1.172 22 C -0.087 4.087 23 C -0.175 4.175 24 C 0.146 3.854 25 F -0.089 7.089 26 C -0.129 4.129 27 C -0.108 4.108 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.238 0.762 42 H 0.159 0.841 43 H 0.141 0.859 44 H 0.226 0.774 45 H 0.153 0.847 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.984 0.605 -1.715 5.306 hybrid contribution 0.374 0.196 0.349 0.548 sum -4.610 0.801 -1.366 4.874 Atomic orbital electron populations 1.26121 1.20405 1.04587 1.04533 0.78182 0.66877 0.66108 0.63701 1.26143 1.06481 1.18582 1.04588 1.26143 1.06484 1.08049 1.15118 1.27462 1.03135 0.99532 1.10229 1.21097 0.97305 0.94651 0.97737 1.21186 0.99154 0.99768 0.92874 1.19834 1.01438 0.94214 0.94861 1.20250 0.87995 0.98766 0.89156 1.45938 1.10398 1.58104 1.22883 1.17974 0.88384 0.78289 0.80873 1.90880 1.23160 1.55705 1.69944 1.20070 0.94618 1.05990 0.97076 1.21032 0.89601 0.95262 0.98838 1.20314 0.96697 1.01266 0.95850 1.24982 0.96553 0.87191 1.10266 1.86532 1.92778 1.16913 1.37950 0.85720 0.79131 0.80470 0.77871 1.17224 1.17348 1.17170 1.21129 0.96892 0.95692 0.94938 1.21146 0.91141 1.03398 1.01771 1.17740 0.80153 0.95375 0.92108 1.91635 1.37110 1.91254 1.88857 1.21189 0.99089 0.93860 0.98791 1.21098 0.97251 0.99763 0.92648 0.91140 0.91022 0.91165 0.91052 0.90934 0.91167 0.91180 0.90933 0.91050 0.85958 0.86112 0.90254 0.90252 0.76211 0.84138 0.85938 0.77424 0.84691 0.83312 0.86099 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.91 8.65 101.05 0.87 1.78 16 2 Si 1.06 -3.21 12.32 -169.99 -2.09 -5.31 16 3 C -0.45 0.97 8.53 101.05 0.86 1.83 16 4 C -0.45 0.97 8.53 101.05 0.86 1.83 16 5 C -0.36 0.36 4.59 -39.58 -0.18 0.18 16 6 C -0.09 0.05 9.29 -39.58 -0.37 -0.32 16 7 C -0.11 0.01 9.70 -39.58 -0.38 -0.38 16 8 C -0.10 -0.02 5.25 -104.63 -0.55 -0.56 16 9 C 0.16 0.13 5.80 -5.19 -0.03 0.10 16 10 N -0.72 -0.44 5.50 -62.48 -0.34 -0.78 16 11 C 0.56 1.92 7.77 -12.40 -0.10 1.83 16 12 O -0.52 -3.91 15.34 5.30 0.08 -3.83 16 13 C -0.17 -0.30 5.88 -104.92 -0.62 -0.91 16 14 C -0.03 0.03 9.09 -39.19 -0.36 -0.33 16 15 C -0.14 0.23 5.39 -104.68 -0.56 -0.33 16 16 C -0.08 0.21 2.82 36.01 0.10 0.32 16 17 O -0.54 1.07 12.76 -35.23 -0.45 0.62 16 18 Si 0.95 -2.40 25.06 -169.99 -4.26 -6.66 16 19 H -0.25 0.59 7.11 56.52 0.40 0.99 16 20 H -0.25 0.19 7.11 56.52 0.40 0.59 16 21 H -0.25 0.50 7.11 56.52 0.40 0.90 16 22 C -0.07 0.11 8.66 -39.51 -0.34 -0.24 16 23 C -0.16 0.05 10.01 -39.56 -0.40 -0.35 16 24 C 0.17 0.40 7.29 -38.96 -0.28 0.12 16 25 F -0.11 -0.57 15.55 2.25 0.04 -0.54 16 26 C -0.11 0.00 9.70 -39.58 -0.38 -0.38 16 27 C -0.09 0.05 9.29 -39.58 -0.37 -0.32 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 34 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 35 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.12 -0.27 7.43 -52.49 -0.39 -0.66 16 38 H 0.12 -0.12 8.06 -52.48 -0.42 -0.55 16 39 H 0.08 0.11 8.09 -51.93 -0.42 -0.31 16 40 H 0.08 0.11 8.09 -51.93 -0.42 -0.31 16 41 H 0.40 -0.61 6.50 -40.82 -0.27 -0.87 16 42 H 0.14 -0.38 6.40 -52.49 -0.34 -0.72 16 43 H 0.12 -0.44 7.96 -51.93 -0.41 -0.86 16 44 H 0.38 -1.88 8.70 45.56 0.40 -1.48 16 45 H 0.14 -0.45 4.86 -52.49 -0.25 -0.70 16 46 H 0.15 -0.32 8.06 -52.49 -0.42 -0.75 16 47 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 48 H 0.12 -0.27 7.43 -52.49 -0.39 -0.66 16 LS Contribution 404.83 15.07 6.10 6.10 Total: 0.00 -8.06 404.83 -9.40 -17.46 By element: Atomic # 1 Polarization: -4.67 SS G_CDS: -6.25 Total: -10.92 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.22 Total: 3.86 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: -0.34 Total: -0.78 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.37 Total: -3.21 kcal Atomic # 9 Polarization: -0.57 SS G_CDS: 0.04 Total: -0.54 kcal Atomic # 14 Polarization: -5.61 SS G_CDS: -6.35 Total: -11.96 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -8.06 -9.40 -17.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_12335834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.939 kcal (2) G-P(sol) polarization free energy of solvation -8.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds