Wall clock time and date at job start Sat Mar 6 2021 15:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 N 1.46501 * 109.47472 * 270.28569 * 9 8 7 11 11 C 1.34772 * 120.00233 * 179.97438 * 10 9 8 12 12 O 1.21571 * 120.00237 * 359.97438 * 11 10 9 13 13 C 1.47691 * 120.00015 * 179.97438 * 11 10 9 14 14 C 1.39618 * 120.16648 * 359.71891 * 13 11 10 15 15 C 1.37898 * 119.87740 * 179.80925 * 14 13 11 16 16 C 1.50703 * 119.88959 * 180.18948 * 15 14 13 17 17 O 1.42894 * 109.47403 * 300.25906 * 16 15 14 18 18 Si 1.86307 * 109.46989 * 180.25791 * 16 15 14 19 19 H 1.48507 * 109.46733 * 60.00237 * 18 16 15 20 20 H 1.48502 * 109.47115 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47260 * 300.00320 * 18 16 15 22 22 C 1.38419 * 120.22123 * 0.45295 * 15 14 13 23 23 C 1.38256 * 120.33479 * 359.78135 * 22 15 14 24 24 C 1.38278 * 120.11296 * 0.02562 * 23 22 15 25 25 F 1.35110 * 120.10156 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 27 27 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 28 28 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 29 29 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 30 30 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 33 33 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 34 34 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 35 35 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 36 36 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 37 37 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 38 38 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 39 39 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 40 40 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 41 41 H 0.97001 * 119.99412 * 359.97438 * 10 9 8 42 42 H 1.08000 * 120.05927 * 0.02715 * 14 13 11 43 43 H 1.09002 * 109.46878 * 60.26230 * 16 15 14 44 44 H 0.96706 * 114.00331 * 300.00469 * 17 16 15 45 45 H 1.07998 * 119.83275 * 179.76333 * 22 15 14 46 46 H 1.07998 * 119.93862 * 179.97438 * 23 22 15 47 47 H 1.08001 * 120.00310 * 179.72161 * 26 8 7 48 48 H 1.07997 * 120.00460 * 359.97438 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 7 2.7675 -3.3550 5.8102 11 6 2.9760 -4.0212 6.9631 12 8 4.1102 -4.2405 7.3419 13 6 1.8266 -4.4850 7.7663 14 6 0.5226 -4.2300 7.3376 15 6 -0.5462 -4.6692 8.0901 16 6 -1.9539 -4.3978 7.6255 17 8 -2.1564 -2.9874 7.5175 18 14 -3.1611 -5.1062 8.8550 19 1 -2.9466 -4.4724 10.1808 20 1 -4.5483 -4.8383 8.3974 21 1 -2.9507 -6.5719 8.9672 22 6 -0.3304 -5.3537 9.2737 23 6 0.9571 -5.6068 9.7092 24 6 2.0390 -5.1762 8.9634 25 9 3.2971 -5.4233 9.3895 26 6 3.1758 -0.8214 3.8172 27 6 2.7155 -0.1696 2.6883 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1208 -0.3644 -2.4111 36 1 3.5741 -0.8786 -1.5208 37 1 2.5357 -2.7986 0.5826 38 1 3.3471 -3.9610 2.5960 39 1 4.5134 -3.7509 4.7175 40 1 4.5127 -2.2094 5.6076 41 1 1.8625 -3.1804 5.5078 42 1 0.3513 -3.6929 6.4164 43 1 -2.1113 -4.8631 6.6524 44 1 -2.0325 -2.5075 8.3479 45 1 -1.1721 -5.6914 9.8602 46 1 1.1181 -6.1411 10.6339 47 1 3.3551 -0.2660 4.7259 48 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_12335834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:56:57 Heat of formation + Delta-G solvation = -101.562368 kcal Electronic energy + Delta-G solvation = -28968.425831 eV Core-core repulsion = 24833.027826 eV Total energy + Delta-G solvation = -4135.398005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.142 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -50.05697 -41.45168 -40.29732 -39.69222 -37.46390 -36.16367 -33.32567 -32.35862 -31.86000 -31.76173 -29.40610 -28.27946 -28.24650 -27.31937 -26.62833 -25.17063 -23.45133 -23.09606 -22.07706 -21.62949 -19.47226 -18.49439 -18.36296 -17.76639 -17.10473 -17.06476 -16.81693 -16.51323 -16.18263 -16.00525 -15.77075 -15.67310 -15.65117 -15.19051 -14.63430 -14.42048 -14.33142 -14.16758 -13.97840 -13.92063 -13.86081 -13.70929 -13.64678 -13.47342 -13.21538 -13.10294 -13.09505 -12.94708 -12.90049 -12.66630 -12.26231 -12.06943 -11.92219 -11.67651 -11.38882 -10.88813 -10.75479 -10.74209 -10.52365 -10.46660 -10.22313 -9.84846 -9.79012 -9.65938 -0.55956 -0.07626 0.18519 0.53544 1.18418 1.50543 1.52832 1.56975 1.85857 1.91238 1.97547 2.03965 2.18551 2.42707 2.68557 2.96046 3.00054 3.34422 3.42204 3.52872 3.62973 3.68087 3.89467 3.94189 4.05917 4.16025 4.32800 4.42923 4.54789 4.56172 4.62142 4.75183 4.75633 4.79706 4.86492 4.86862 4.89045 4.90632 4.91057 4.91229 4.92750 5.01108 5.08293 5.15000 5.18644 5.41392 5.54418 5.59526 5.61336 5.62853 5.70407 5.72529 6.13480 6.27722 6.71465 6.95386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.128 2.872 3 C -0.465 4.465 4 C -0.464 4.464 5 C -0.372 4.372 6 C -0.099 4.099 7 C -0.121 4.121 8 C -0.108 4.108 9 C 0.164 3.836 10 N -0.704 5.704 11 C 0.554 3.446 12 O -0.572 6.572 13 C -0.186 4.186 14 C -0.022 4.022 15 C -0.132 4.132 16 C -0.074 4.074 17 O -0.549 6.549 18 Si 0.974 3.026 19 H -0.247 1.247 20 H -0.276 1.276 21 H -0.252 1.252 22 C -0.063 4.063 23 C -0.151 4.151 24 C 0.134 3.866 25 F -0.136 7.136 26 C -0.121 4.121 27 C -0.099 4.099 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.414 0.586 42 H 0.159 0.841 43 H 0.135 0.865 44 H 0.391 0.609 45 H 0.157 0.843 46 H 0.166 0.834 47 H 0.125 0.875 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 1.708 -2.709 7.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.315 2.685 3 C -0.571 4.571 4 C -0.571 4.571 5 C -0.411 4.411 6 C -0.117 4.117 7 C -0.140 4.140 8 C -0.108 4.108 9 C 0.041 3.959 10 N -0.357 5.357 11 C 0.342 3.658 12 O -0.452 6.452 13 C -0.190 4.190 14 C -0.040 4.040 15 C -0.133 4.133 16 C -0.185 4.185 17 O -0.356 6.356 18 Si 0.798 3.202 19 H -0.171 1.171 20 H -0.201 1.201 21 H -0.176 1.176 22 C -0.081 4.081 23 C -0.170 4.170 24 C 0.114 3.886 25 F -0.114 7.114 26 C -0.140 4.140 27 C -0.117 4.117 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.240 0.760 45 H 0.174 0.826 46 H 0.183 0.817 47 H 0.143 0.857 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.872 1.024 -2.396 7.350 hybrid contribution 0.861 0.101 0.528 1.015 sum -6.011 1.126 -1.869 6.395 Atomic orbital electron populations 1.26274 1.21444 1.04542 1.04575 0.77136 0.65249 0.64428 0.61645 1.26310 1.06356 1.19637 1.04834 1.26308 1.06358 1.08552 1.15903 1.27979 1.02470 0.99610 1.11060 1.21378 0.97094 0.95109 0.98136 1.21344 0.99375 1.00211 0.93069 1.19749 1.02161 0.94388 0.94535 1.20181 0.87964 0.98303 0.89442 1.45849 1.11065 1.56817 1.21927 1.18335 0.88261 0.77894 0.81290 1.90844 1.25120 1.57938 1.71286 1.20043 0.94980 1.06944 0.97078 1.21184 0.88545 0.94874 0.99412 1.20512 0.97089 1.00227 0.95448 1.25017 0.95336 0.87144 1.11002 1.86512 1.92707 1.17150 1.39223 0.85327 0.77340 0.79952 0.77586 1.17073 1.20139 1.17572 1.21400 0.96890 0.94862 0.94957 1.21349 0.90795 1.02867 1.01990 1.18163 0.79912 0.97240 0.93319 1.91563 1.38869 1.91757 1.89237 1.21345 0.99345 0.93861 0.99433 1.21376 0.97064 1.00703 0.92569 0.91283 0.90819 0.91267 0.91424 0.90780 0.90886 0.90872 0.90779 0.91421 0.84372 0.85625 0.91112 0.91129 0.74824 0.82369 0.84711 0.75968 0.82603 0.81683 0.85657 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.30 8.65 113.37 0.98 3.28 16 2 Si 1.13 -7.85 12.32 68.60 0.85 -7.00 16 3 C -0.46 2.33 8.53 113.37 0.97 3.30 16 4 C -0.46 2.36 8.53 113.37 0.97 3.32 16 5 C -0.37 0.95 4.59 22.27 0.10 1.06 16 6 C -0.10 0.15 9.29 22.27 0.21 0.36 16 7 C -0.12 -0.03 9.70 22.27 0.22 0.19 16 8 C -0.11 -0.12 5.25 -19.87 -0.10 -0.22 16 9 C 0.16 0.54 5.80 85.63 0.50 1.04 16 10 N -0.70 -1.74 5.50 -469.86 -2.58 -4.32 16 11 C 0.55 4.94 7.77 86.74 0.67 5.61 16 12 O -0.57 -10.41 15.34 -3.94 -0.06 -10.47 16 13 C -0.19 -0.85 5.88 -20.05 -0.12 -0.97 16 14 C -0.02 0.05 9.09 22.52 0.20 0.25 16 15 C -0.13 0.61 5.39 -19.90 -0.11 0.50 16 16 C -0.07 0.53 2.82 71.24 0.20 0.73 16 17 O -0.55 3.10 12.76 -148.98 -1.90 1.20 16 18 Si 0.97 -6.30 25.06 68.60 1.72 -4.58 16 19 H -0.25 1.64 7.11 99.48 0.71 2.34 16 20 H -0.28 0.51 7.11 99.48 0.71 1.22 16 21 H -0.25 1.43 7.11 99.48 0.71 2.14 16 22 C -0.06 0.28 8.66 22.32 0.19 0.47 16 23 C -0.15 0.10 10.01 22.28 0.22 0.32 16 24 C 0.13 0.85 7.29 22.67 0.17 1.02 16 25 F -0.14 -1.80 15.55 44.97 0.70 -1.10 16 26 C -0.12 -0.04 9.70 22.27 0.22 0.18 16 27 C -0.10 0.14 9.29 22.27 0.21 0.35 16 28 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 29 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 33 H 0.07 -0.40 7.69 -2.38 -0.02 -0.42 16 34 H 0.07 -0.41 7.69 -2.38 -0.02 -0.43 16 35 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 36 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 37 H 0.14 -0.74 7.43 -2.91 -0.02 -0.76 16 38 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 39 H 0.07 0.35 8.09 -2.38 -0.02 0.33 16 40 H 0.07 0.35 8.09 -2.39 -0.02 0.34 16 41 H 0.41 -1.13 6.50 -92.71 -0.60 -1.73 16 42 H 0.16 -1.03 6.40 -2.91 -0.02 -1.05 16 43 H 0.14 -1.26 7.96 -2.39 -0.02 -1.28 16 44 H 0.39 -4.51 8.70 -74.05 -0.64 -5.16 16 45 H 0.16 -1.36 4.86 -2.91 -0.01 -1.37 16 46 H 0.17 -0.77 8.06 -2.91 -0.02 -0.79 16 47 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 48 H 0.14 -0.71 7.43 -2.91 -0.02 -0.74 16 Total: 0.00 -20.57 404.83 4.91 -15.66 By element: Atomic # 1 Polarization: -10.69 SS G_CDS: 0.50 Total: -10.19 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 5.69 Total: 20.80 kcal Atomic # 7 Polarization: -1.74 SS G_CDS: -2.58 Total: -4.32 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -1.96 Total: -9.27 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.70 Total: -1.10 kcal Atomic # 14 Polarization: -14.14 SS G_CDS: 2.56 Total: -11.58 kcal Total: -20.57 4.91 -15.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_12335834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.903 kcal (2) G-P(sol) polarization free energy of solvation -20.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds