Wall clock time and date at job start Sat Mar 6 2021 15:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46504 * 109.46975 * 270.28241 * 9 8 7 11 11 C 1.34770 * 120.00048 * 180.02562 * 10 9 8 12 12 O 1.21596 * 120.00374 * 359.97438 * 11 10 9 13 13 C 1.47580 * 120.00136 * 179.97438 * 11 10 9 14 14 C 1.40210 * 119.83031 * 359.97438 * 13 11 10 15 15 C 1.36228 * 120.37587 * 179.97438 * 14 13 11 16 16 C 1.39873 * 119.96463 * 0.02562 * 15 14 13 17 17 C 1.46255 * 133.84462 * 179.97438 * 16 15 14 18 18 C 1.50699 * 126.48541 * 359.97438 * 17 16 15 19 19 O 1.42900 * 109.46973 * 285.00011 * 18 17 16 20 20 Si 1.86291 * 109.47571 * 164.99524 * 18 17 16 21 21 H 1.48504 * 109.47174 * 60.00127 * 20 18 17 22 22 H 1.48495 * 109.47564 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47579 * 300.00224 * 20 18 17 24 24 C 1.34460 * 107.03779 * 180.02562 * 17 16 15 25 25 N 1.36567 * 109.97987 * 0.02562 * 24 17 16 26 26 C 1.37822 * 109.86118 * 359.97438 * 25 24 17 27 27 C 1.38659 * 133.37649 * 180.32629 * 26 25 24 28 28 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 29 29 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 30 30 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 31 31 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 32 32 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 35 35 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 36 36 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 37 37 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 38 38 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 39 39 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 40 40 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 41 41 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 42 42 H 1.08997 * 109.47544 * 150.28201 * 9 8 7 43 43 H 0.97001 * 120.00263 * 359.97438 * 10 9 8 44 44 H 1.07997 * 119.81109 * 0.02623 * 14 13 11 45 45 H 1.08009 * 120.01674 * 179.97438 * 15 14 13 46 46 H 1.09003 * 109.46722 * 44.99512 * 18 17 16 47 47 H 0.96695 * 114.00129 * 299.99698 * 19 18 17 48 48 H 1.07996 * 125.00588 * 180.02562 * 24 17 16 49 49 H 0.96999 * 125.06650 * 179.97438 * 25 24 17 50 50 H 1.07999 * 120.16441 * 359.93505 * 27 26 25 51 51 H 1.08001 * 120.00274 * 179.72697 * 28 8 7 52 52 H 1.07997 * 120.00460 * 359.97438 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4066 -2.1839 3.7828 9 6 3.9089 -2.8942 5.0133 10 7 2.7694 -3.3552 5.8105 11 6 2.9789 -4.0204 6.9637 12 8 4.1136 -4.2385 7.3424 13 6 1.8310 -4.4843 7.7669 14 6 0.5241 -4.2304 7.3273 15 6 -0.5436 -4.6540 8.0597 16 6 -0.3385 -5.3458 9.2579 17 6 -1.2334 -5.9243 10.2597 18 6 -2.7400 -5.9076 10.2318 19 8 -3.2083 -4.6011 10.5721 20 14 -3.3978 -7.1429 11.4613 21 1 -2.9241 -6.7864 12.8229 22 1 -4.8824 -7.1260 11.4342 23 1 -2.9113 -8.5006 11.1077 24 6 -0.4576 -6.4729 11.2111 25 7 0.8599 -6.2924 10.9004 26 6 0.9705 -5.6059 9.7104 27 6 2.0515 -5.1762 8.9558 28 6 3.1758 -0.8214 3.8172 29 6 2.7155 -0.1696 2.6883 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1207 2.2703 -0.8900 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5211 37 1 2.1208 -0.3644 -2.4111 38 1 3.5741 -0.8786 -1.5208 39 1 2.5357 -2.7986 0.5826 40 1 3.3471 -3.9610 2.5960 41 1 4.5149 -3.7504 4.7167 42 1 4.5141 -2.2090 5.6069 43 1 1.8642 -3.1809 5.5086 44 1 0.3629 -3.6969 6.4023 45 1 -1.5479 -4.4550 7.7158 46 1 -3.0877 -6.1693 9.2324 47 1 -2.9359 -4.3021 11.4504 48 1 -0.8226 -6.9814 12.0912 49 1 1.6065 -6.6012 11.4371 50 1 3.0594 -5.3736 9.2900 51 1 3.3555 -0.2659 4.7258 52 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_12335838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:57:26 Heat of formation + Delta-G solvation = -27.429043 kcal Electronic energy + Delta-G solvation = -30829.908786 eV Core-core repulsion = 26689.763608 eV Total energy + Delta-G solvation = -4140.145178 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 382.163 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.48010 -41.04272 -39.92154 -37.91266 -37.45401 -36.10156 -33.26706 -32.52051 -31.84971 -30.73820 -30.54420 -29.39073 -28.27670 -28.24830 -27.17963 -26.38196 -24.37642 -23.66202 -23.44036 -22.07767 -21.50867 -20.80419 -19.47053 -18.63846 -17.90228 -17.24543 -17.08666 -16.94276 -16.67573 -16.13465 -15.95284 -15.77686 -15.73390 -15.48494 -15.11583 -14.86585 -14.79204 -14.56172 -14.32014 -14.26492 -14.14057 -13.96667 -13.91878 -13.81778 -13.62709 -13.46700 -13.12401 -13.10024 -13.07799 -12.94700 -12.65924 -12.65204 -12.40742 -12.23897 -12.02766 -11.91047 -11.69608 -11.29780 -10.88057 -10.79960 -10.74627 -10.73994 -10.28748 -10.26392 -9.78187 -9.64677 -9.38825 -8.80985 -0.35004 0.20297 0.35904 0.54439 1.26774 1.36012 1.51975 1.61090 1.86221 1.87762 1.89511 2.00918 2.04337 2.10156 2.31259 2.68765 2.85194 2.99241 3.55892 3.63626 3.68452 3.75234 3.85883 3.90713 3.91625 4.11006 4.17138 4.28529 4.35287 4.46627 4.49855 4.56470 4.60410 4.63695 4.76402 4.81418 4.86496 4.86927 4.90809 4.91145 4.91341 4.92583 4.97822 5.02668 5.19464 5.19657 5.23105 5.40465 5.42469 5.49153 5.60358 5.60660 5.61334 5.64213 5.70127 5.72869 5.96367 6.14630 6.39776 6.49739 6.84387 7.06088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.128 2.872 3 C -0.464 4.464 4 C -0.464 4.464 5 C -0.372 4.372 6 C -0.100 4.100 7 C -0.122 4.122 8 C -0.108 4.108 9 C 0.164 3.836 10 N -0.707 5.707 11 C 0.561 3.439 12 O -0.582 6.582 13 C -0.135 4.135 14 C -0.109 4.109 15 C -0.080 4.080 16 C -0.078 4.078 17 C -0.226 4.226 18 C -0.047 4.047 19 O -0.558 6.558 20 Si 0.987 3.013 21 H -0.239 1.239 22 H -0.277 1.277 23 H -0.259 1.259 24 C 0.079 3.921 25 N -0.578 5.578 26 C 0.067 3.933 27 C -0.067 4.067 28 C -0.122 4.122 29 C -0.100 4.100 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.413 0.587 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.113 0.887 47 H 0.387 0.613 48 H 0.203 0.797 49 H 0.434 0.566 50 H 0.129 0.871 51 H 0.125 0.875 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 0.097 -0.359 3.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.315 2.685 3 C -0.571 4.571 4 C -0.571 4.571 5 C -0.412 4.412 6 C -0.117 4.117 7 C -0.141 4.141 8 C -0.108 4.108 9 C 0.041 3.959 10 N -0.359 5.359 11 C 0.350 3.650 12 O -0.464 6.464 13 C -0.139 4.139 14 C -0.129 4.129 15 C -0.098 4.098 16 C -0.083 4.083 17 C -0.234 4.234 18 C -0.157 4.157 19 O -0.364 6.364 20 Si 0.810 3.190 21 H -0.162 1.162 22 H -0.202 1.202 23 H -0.183 1.183 24 C -0.050 4.050 25 N -0.181 5.181 26 C -0.040 4.040 27 C -0.088 4.088 28 C -0.141 4.141 29 C -0.118 4.118 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.251 0.749 44 H 0.165 0.835 45 H 0.161 0.839 46 H 0.131 0.869 47 H 0.235 0.765 48 H 0.220 0.780 49 H 0.274 0.726 50 H 0.147 0.853 51 H 0.143 0.857 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.500 -0.770 0.054 3.584 hybrid contribution 0.837 0.123 0.505 0.985 sum -2.663 -0.647 0.559 2.797 Atomic orbital electron populations 1.26283 1.21539 1.04513 1.04561 0.77136 0.65192 0.64466 0.61670 1.26304 1.06373 1.19591 1.04827 1.26302 1.06375 1.08532 1.15874 1.27979 1.02547 0.99613 1.11073 1.21377 0.97113 0.95112 0.98142 1.21349 0.99408 1.00211 0.93088 1.19784 1.02016 0.94390 0.94636 1.20173 0.88090 0.98257 0.89390 1.45877 1.10926 1.57005 1.22137 1.18408 0.88391 0.77249 0.80915 1.90767 1.25291 1.58675 1.71650 1.19428 0.93296 1.04564 0.96659 1.20879 0.90303 1.00880 1.00802 1.20421 0.99909 0.96683 0.92782 1.19520 0.91848 1.00645 0.96277 1.20901 0.96053 1.09200 0.97215 1.24399 0.89561 0.92614 1.09106 1.86482 1.76843 1.32771 1.40337 0.85211 0.79037 0.76816 0.77940 1.16231 1.20238 1.18345 1.22275 0.82186 1.00286 1.00254 1.41779 1.08337 1.48667 1.19297 1.18128 0.95009 1.00917 0.89914 1.20111 0.97439 0.97760 0.93487 1.21351 0.99404 0.93904 0.99418 1.21375 0.97100 1.00688 0.92588 0.91317 0.90806 0.91306 0.91388 0.90766 0.90908 0.90893 0.90766 0.91384 0.84401 0.85628 0.91105 0.91132 0.74918 0.83494 0.83876 0.86943 0.76468 0.78001 0.72628 0.85343 0.85656 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.05 8.65 113.37 0.98 3.04 16 2 Si 1.13 -7.34 12.32 68.60 0.85 -6.50 16 3 C -0.46 2.17 8.53 113.37 0.97 3.14 16 4 C -0.46 2.19 8.53 113.37 0.97 3.16 16 5 C -0.37 0.75 4.59 22.27 0.10 0.85 16 6 C -0.10 0.09 9.29 22.27 0.21 0.30 16 7 C -0.12 -0.10 9.70 22.27 0.22 0.11 16 8 C -0.11 -0.18 5.25 -19.87 -0.10 -0.29 16 9 C 0.16 0.59 5.80 85.63 0.50 1.09 16 10 N -0.71 -2.33 5.50 -469.95 -2.58 -4.91 16 11 C 0.56 5.06 7.76 86.71 0.67 5.73 16 12 O -0.58 -9.71 16.31 -4.02 -0.07 -9.78 16 13 C -0.14 -0.86 5.87 -20.07 -0.12 -0.98 16 14 C -0.11 -0.23 9.46 22.28 0.21 -0.01 16 15 C -0.08 -0.22 10.03 22.20 0.22 0.00 16 16 C -0.08 -0.32 6.35 -20.14 -0.13 -0.45 16 17 C -0.23 -0.04 5.57 -18.64 -0.10 -0.14 16 18 C -0.05 0.09 3.06 71.24 0.22 0.30 16 19 O -0.56 -0.02 12.88 -148.98 -1.92 -1.93 16 20 Si 0.99 -4.01 26.08 68.60 1.79 -2.23 16 21 H -0.24 1.53 7.03 99.48 0.70 2.23 16 22 H -0.28 -0.12 7.11 99.48 0.71 0.58 16 23 H -0.26 0.68 7.11 99.48 0.71 1.38 16 24 C 0.08 -0.27 10.43 83.09 0.87 0.59 16 25 N -0.58 1.07 6.07 -187.71 -1.14 -0.07 16 26 C 0.07 0.28 7.26 38.96 0.28 0.56 16 27 C -0.07 -0.44 9.61 22.63 0.22 -0.22 16 28 C -0.12 -0.11 9.70 22.27 0.22 0.10 16 29 C -0.10 0.09 9.29 22.27 0.21 0.29 16 30 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 32 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 35 H 0.07 -0.37 7.69 -2.38 -0.02 -0.39 16 36 H 0.07 -0.38 7.69 -2.38 -0.02 -0.40 16 37 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 38 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 39 H 0.14 -0.65 7.43 -2.91 -0.02 -0.68 16 40 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 41 H 0.07 0.36 8.09 -2.38 -0.02 0.34 16 42 H 0.07 0.36 8.09 -2.39 -0.02 0.34 16 43 H 0.41 -0.52 6.45 -92.71 -0.60 -1.11 16 44 H 0.15 -0.51 6.36 -2.91 -0.02 -0.53 16 45 H 0.14 -0.03 8.06 -2.91 -0.02 -0.06 16 46 H 0.11 -0.24 7.96 -2.39 -0.02 -0.26 16 47 H 0.39 -2.54 8.70 -74.06 -0.64 -3.18 16 48 H 0.20 -2.08 6.29 -2.91 -0.02 -2.10 16 49 H 0.43 -3.17 8.96 -92.71 -0.83 -4.00 16 50 H 0.13 0.91 7.62 -2.91 -0.02 0.89 16 51 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 52 H 0.14 -0.64 7.43 -2.91 -0.02 -0.66 16 Total: 0.00 -21.48 433.81 3.17 -18.32 By element: Atomic # 1 Polarization: -9.72 SS G_CDS: -0.36 Total: -10.08 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.60 Total: 17.18 kcal Atomic # 7 Polarization: -1.26 SS G_CDS: -3.72 Total: -4.98 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.98 Total: -11.71 kcal Atomic # 14 Polarization: -11.36 SS G_CDS: 2.63 Total: -8.72 kcal Total: -21.48 3.17 -18.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_12335838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.111 kcal (2) G-P(sol) polarization free energy of solvation -21.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds