Wall clock time and date at job start Sat Mar 6 2021 16:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86300 * 109.47075 * 2 1 4 4 C 1.86302 * 109.47240 * 240.00058 * 2 1 3 5 5 C 1.86794 * 109.47307 * 120.00087 * 2 1 3 6 6 C 1.38236 * 120.00419 * 89.99745 * 5 2 1 7 7 C 1.38231 * 120.00366 * 180.02562 * 6 5 2 8 8 C 1.38239 * 119.99778 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99842 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47062 * 90.00106 * 9 8 7 11 11 C 1.34780 * 120.00314 * 179.97438 * 10 9 8 12 12 O 1.21548 * 119.99508 * 0.02562 * 11 10 9 13 13 C 1.47843 * 120.00130 * 180.02562 * 11 10 9 14 14 C 1.39557 * 120.14133 * 179.97438 * 13 11 10 15 15 C 1.37983 * 119.87465 * 180.02562 * 14 13 11 16 16 C 1.50702 * 119.91933 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47057 * 299.97469 * 16 15 14 18 18 Si 1.86303 * 109.46966 * 179.97438 * 16 15 14 19 19 H 1.48497 * 109.47268 * 59.99805 * 18 16 15 20 20 H 1.48501 * 109.47108 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46844 * 299.99402 * 18 16 15 22 22 C 1.38318 * 120.15635 * 359.97438 * 15 14 13 23 23 C 1.38465 * 120.28303 * 0.02562 * 22 15 14 24 24 Br 1.89102 * 119.93548 * 179.97438 * 23 22 15 25 25 C 1.38028 * 120.12477 * 0.02562 * 23 22 15 26 26 C 1.38228 * 120.00060 * 0.25739 * 8 7 6 27 27 C 1.38239 * 120.00189 * 359.49079 * 26 8 7 28 28 H 1.08997 * 109.47601 * 300.00018 * 1 2 3 29 29 H 1.08999 * 109.47092 * 60.00559 * 1 2 3 30 30 H 1.09005 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46836 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46704 * 299.99678 * 3 2 1 33 33 H 1.08992 * 109.47305 * 59.99808 * 3 2 1 34 34 H 1.09008 * 109.47165 * 299.99581 * 4 2 1 35 35 H 1.08999 * 109.47582 * 59.99683 * 4 2 1 36 36 H 1.08993 * 109.47555 * 180.02562 * 4 2 1 37 37 H 1.08003 * 120.00003 * 0.02562 * 6 5 2 38 38 H 1.07995 * 120.00392 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47378 * 330.00144 * 9 8 7 40 40 H 1.08995 * 109.47255 * 210.00197 * 9 8 7 41 41 H 0.97005 * 120.00021 * 0.02562 * 10 9 8 42 42 H 1.08001 * 120.06366 * 0.02562 * 14 13 11 43 43 H 1.09004 * 109.47510 * 59.97591 * 16 15 14 44 44 H 0.96695 * 113.99806 * 300.00362 * 17 16 15 45 45 H 1.07997 * 119.85636 * 180.27647 * 22 15 14 46 46 H 1.08000 * 120.07859 * 179.97438 * 25 23 22 47 47 H 1.08000 * 120.00112 * 179.72413 * 26 8 7 48 48 H 1.07990 * 120.00005 * 180.23198 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2432 1.4910 7 6 3.1764 -2.8949 2.6198 8 6 3.4068 -2.1839 3.7827 9 6 3.9081 -2.8945 5.0135 10 7 5.3731 -2.8956 5.0141 11 6 6.0462 -3.4790 6.0256 12 8 5.4376 -4.0048 6.9370 13 6 7.5246 -3.4796 6.0264 14 6 8.2245 -4.0825 7.0725 15 6 9.6044 -4.0793 7.0680 16 6 10.3612 -4.7305 8.1968 17 8 10.0179 -4.0947 9.4297 18 14 12.1920 -4.5582 7.8978 19 1 12.5488 -3.1184 7.8283 20 1 12.9378 -5.1993 9.0105 21 1 12.5486 -5.2191 6.6167 22 6 10.2945 -3.4809 6.0294 23 6 9.6066 -2.8809 4.9882 24 35 10.5600 -2.0649 3.5736 25 6 8.2263 -2.8763 4.9815 26 6 3.1719 -0.8222 3.8183 27 6 2.7165 -0.1695 2.6879 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7564 -0.0005 32 1 2.1206 2.2702 -0.8900 33 1 2.1206 2.2703 0.8899 34 1 2.1207 -1.9060 -1.5211 35 1 2.1207 -0.3645 -2.4112 36 1 3.5739 -0.8786 -1.5210 37 1 2.5364 -2.7986 0.5823 38 1 3.3560 -3.9595 2.5932 39 1 3.5440 -3.9219 5.0135 40 1 3.5448 -2.3803 5.9032 41 1 5.8587 -2.4757 4.2869 42 1 7.6872 -4.5506 7.8841 43 1 10.0993 -5.7874 8.2479 44 1 10.2236 -3.1502 9.4557 45 1 11.3744 -3.4852 6.0285 46 1 7.6906 -2.4077 4.1692 47 1 3.3477 -0.2674 4.7281 48 1 2.5366 0.8950 2.7147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_12335870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:22:19 Heat of formation + Delta-G solvation = -53.594002 kcal Electronic energy + Delta-G solvation = -28151.863970 eV Core-core repulsion = 24148.182002 eV Total energy + Delta-G solvation = -4003.681968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 421.062 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65810 -40.38277 -39.69820 -37.69627 -36.18189 -33.65462 -33.51057 -31.96630 -31.86017 -30.50603 -29.42190 -28.28286 -28.26678 -27.50205 -26.94184 -24.81939 -23.45220 -22.84815 -22.09750 -21.55251 -19.35197 -18.24663 -17.76850 -17.46997 -17.15251 -16.74981 -16.40698 -16.30442 -15.94996 -15.77902 -15.66891 -15.15329 -14.92061 -14.74441 -14.36180 -14.25855 -14.16447 -14.02726 -13.90386 -13.78562 -13.60295 -13.45170 -13.32034 -13.13938 -13.10464 -13.04558 -12.95894 -12.66227 -12.29420 -12.15155 -12.00426 -11.92044 -11.78960 -11.56640 -11.33064 -10.90175 -10.76072 -10.74815 -10.60050 -10.42953 -10.17434 -9.94889 -9.79157 -9.66210 -0.56920 -0.19844 0.18348 0.37287 0.53460 1.08233 1.41685 1.45058 1.49876 1.85118 1.87016 1.93714 2.03761 2.17936 2.42771 2.67655 2.96242 3.24568 3.32645 3.52762 3.64766 3.76052 3.83096 3.90488 3.92837 4.16143 4.18045 4.27223 4.34184 4.55621 4.56793 4.60096 4.70933 4.75508 4.84944 4.85017 4.89228 4.89694 4.90594 4.90755 4.91223 5.01113 5.04232 5.14933 5.18643 5.35169 5.41570 5.59481 5.60057 5.62811 5.68375 5.72362 6.13433 6.28403 6.64251 6.95071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.129 2.871 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.100 4.100 7 C -0.122 4.122 8 C -0.109 4.109 9 C 0.164 3.836 10 N -0.707 5.707 11 C 0.560 3.440 12 O -0.569 6.569 13 C -0.134 4.134 14 C -0.023 4.023 15 C -0.114 4.114 16 C -0.080 4.080 17 O -0.549 6.549 18 Si 0.969 3.031 19 H -0.244 1.244 20 H -0.268 1.268 21 H -0.249 1.249 22 C -0.073 4.073 23 C -0.099 4.099 24 Br -0.032 7.032 25 C -0.046 4.046 26 C -0.122 4.122 27 C -0.100 4.100 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.412 0.588 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.391 0.609 45 H 0.146 0.854 46 H 0.157 0.843 47 H 0.127 0.873 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 3.004 -4.931 5.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.316 2.684 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.118 4.118 7 C -0.140 4.140 8 C -0.109 4.109 9 C 0.041 3.959 10 N -0.359 5.359 11 C 0.348 3.652 12 O -0.450 6.450 13 C -0.138 4.138 14 C -0.043 4.043 15 C -0.116 4.116 16 C -0.190 4.190 17 O -0.356 6.356 18 Si 0.791 3.209 19 H -0.168 1.168 20 H -0.193 1.193 21 H -0.173 1.173 22 C -0.093 4.093 23 C -0.178 4.178 24 Br 0.054 6.946 25 C -0.066 4.066 26 C -0.140 4.140 27 C -0.118 4.118 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.250 0.750 42 H 0.157 0.843 43 H 0.149 0.851 44 H 0.240 0.760 45 H 0.163 0.837 46 H 0.175 0.825 47 H 0.145 0.855 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.607 2.403 -4.765 5.573 hybrid contribution -0.411 0.264 0.221 0.536 sum 1.195 2.666 -4.544 5.402 Atomic orbital electron populations 1.26332 1.22006 1.04385 1.04479 0.77125 0.64907 0.64614 0.61790 1.26285 1.06493 1.19412 1.04792 1.26288 1.06492 1.08454 1.15754 1.27952 1.02490 0.99622 1.11082 1.21376 0.97080 0.95091 0.98243 1.21356 0.99422 1.00290 0.92954 1.19779 1.02107 0.94386 0.94631 1.20200 0.79025 1.00663 0.96019 1.45912 1.07319 1.57808 1.24894 1.18332 0.87266 0.77844 0.81746 1.90806 1.70315 1.46644 1.37186 1.19866 0.92353 1.04003 0.97593 1.21281 0.93460 0.93344 0.96170 1.20383 0.93895 1.00129 0.97163 1.25098 1.09911 1.00635 0.83339 1.86529 1.87250 1.28533 1.33320 0.85408 0.73440 0.81733 0.80295 1.16755 1.19291 1.17265 1.21405 1.00877 0.94701 0.92286 1.21708 0.94698 1.04748 0.96687 1.96846 1.74350 1.79673 1.43713 1.21414 0.92281 0.95528 0.97370 1.21357 0.99429 0.93828 0.99403 1.21378 0.97093 1.00712 0.92600 0.91476 0.90819 0.91483 0.91152 0.90827 0.90955 0.90967 0.90824 0.91156 0.84464 0.85551 0.90847 0.90847 0.75028 0.84332 0.85079 0.76001 0.83678 0.82533 0.85544 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.00 8.65 113.37 0.98 2.98 16 2 Si 1.13 -8.11 12.32 68.60 0.85 -7.26 16 3 C -0.46 2.61 8.53 113.37 0.97 3.58 16 4 C -0.46 2.60 8.53 113.37 0.97 3.57 16 5 C -0.37 1.12 4.59 22.27 0.10 1.23 16 6 C -0.10 0.20 9.29 22.27 0.21 0.41 16 7 C -0.12 0.08 9.70 22.27 0.22 0.29 16 8 C -0.11 0.01 5.25 -19.87 -0.10 -0.09 16 9 C 0.16 0.22 5.80 85.63 0.50 0.71 16 10 N -0.71 -0.31 5.50 -469.72 -2.58 -2.90 16 11 C 0.56 3.15 7.77 86.79 0.67 3.83 16 12 O -0.57 -7.80 16.35 -3.87 -0.06 -7.86 16 13 C -0.13 -0.30 5.87 -20.09 -0.12 -0.42 16 14 C -0.02 -0.06 9.15 22.53 0.21 0.14 16 15 C -0.11 0.06 5.38 -19.91 -0.11 -0.05 16 16 C -0.08 0.18 2.82 71.24 0.20 0.38 16 17 O -0.55 0.17 12.77 -148.98 -1.90 -1.73 16 18 Si 0.97 -2.78 25.06 68.60 1.72 -1.06 16 19 H -0.24 0.81 7.11 99.48 0.71 1.52 16 20 H -0.27 -0.21 7.11 99.48 0.71 0.50 16 21 H -0.25 0.59 7.11 99.48 0.71 1.30 16 22 C -0.07 0.08 8.41 22.34 0.19 0.27 16 23 C -0.10 0.07 6.22 22.27 0.14 0.21 16 24 Br -0.03 0.03 33.69 -20.37 -0.69 -0.66 16 25 C -0.05 0.07 9.28 22.55 0.21 0.28 16 26 C -0.12 0.08 9.70 22.27 0.22 0.29 16 27 C -0.10 0.20 9.29 22.27 0.21 0.41 16 28 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 31 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 32 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H 0.07 -0.43 7.69 -2.39 -0.02 -0.44 16 34 H 0.07 -0.42 7.69 -2.38 -0.02 -0.44 16 35 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 36 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 37 H 0.14 -0.78 7.43 -2.91 -0.02 -0.80 16 38 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 39 H 0.07 0.20 8.09 -2.39 -0.02 0.18 16 40 H 0.07 0.20 8.08 -2.39 -0.02 0.18 16 41 H 0.41 -1.68 6.50 -92.70 -0.60 -2.28 16 42 H 0.14 0.70 7.65 -2.91 -0.02 0.68 16 43 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 44 H 0.39 -2.72 8.70 -74.06 -0.64 -3.36 16 45 H 0.15 -0.48 4.86 -2.91 -0.01 -0.50 16 46 H 0.16 -0.94 6.41 -2.91 -0.02 -0.96 16 47 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 48 H 0.14 -0.78 7.43 -2.92 -0.02 -0.80 16 Total: 0.00 -15.81 421.58 3.48 -12.33 By element: Atomic # 1 Polarization: -9.38 SS G_CDS: 0.50 Total: -8.88 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 5.65 Total: 18.02 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -2.58 Total: -2.90 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -1.96 Total: -9.59 kcal Atomic # 14 Polarization: -10.89 SS G_CDS: 2.56 Total: -8.32 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -0.69 Total: -0.66 kcal Total: -15.81 3.48 -12.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_12335870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.261 kcal (2) G-P(sol) polarization free energy of solvation -15.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds