Wall clock time and date at job start Sat Mar 6 2021 16:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86299 * 109.47088 * 2 1 4 4 C 1.86302 * 109.46784 * 239.99839 * 2 1 3 5 5 C 1.86801 * 109.47070 * 120.00292 * 2 1 3 6 6 C 1.38228 * 120.00172 * 90.00083 * 5 2 1 7 7 C 1.38232 * 120.00074 * 180.02562 * 6 5 2 8 8 C 1.38238 * 119.99894 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00053 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47231 * 89.99692 * 9 8 7 11 11 C 1.34771 * 119.99794 * 180.02562 * 10 9 8 12 12 O 1.21564 * 120.00708 * 0.02562 * 11 10 9 13 13 C 1.47726 * 119.99713 * 180.02562 * 11 10 9 14 14 C 1.39633 * 120.11806 * 359.97438 * 13 11 10 15 15 C 1.37867 * 119.88004 * 179.97438 * 14 13 11 16 16 C 1.38630 * 120.11686 * 0.02562 * 15 14 13 17 17 F 1.35098 * 119.87978 * 179.97438 * 16 15 14 18 18 C 1.38681 * 120.23910 * 359.97438 * 16 15 14 19 19 C 1.50701 * 119.93837 * 179.97438 * 18 16 15 20 20 O 1.42895 * 109.47079 * 195.00416 * 19 18 16 21 21 Si 1.86301 * 109.47149 * 314.99911 * 19 18 16 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 C 1.37809 * 120.12043 * 0.25658 * 18 16 15 26 26 C 1.38226 * 120.00112 * 0.25634 * 8 7 6 27 27 C 1.38237 * 119.99887 * 359.49142 * 26 8 7 28 28 H 1.09004 * 109.47371 * 299.99810 * 1 2 3 29 29 H 1.09001 * 109.47694 * 59.99423 * 1 2 3 30 30 H 1.08999 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46907 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47215 * 299.99856 * 3 2 1 33 33 H 1.08997 * 109.47242 * 60.00426 * 3 2 1 34 34 H 1.08997 * 109.47529 * 300.00216 * 4 2 1 35 35 H 1.09004 * 109.47230 * 60.00320 * 4 2 1 36 36 H 1.09005 * 109.46716 * 179.97438 * 4 2 1 37 37 H 1.07999 * 120.00092 * 359.97438 * 6 5 2 38 38 H 1.07998 * 120.00265 * 179.97438 * 7 6 5 39 39 H 1.09006 * 109.47014 * 330.00119 * 9 8 7 40 40 H 1.08998 * 109.47279 * 210.00276 * 9 8 7 41 41 H 0.96998 * 119.99431 * 0.02562 * 10 9 8 42 42 H 1.07997 * 120.06054 * 359.97438 * 14 13 11 43 43 H 1.08000 * 119.93938 * 179.97438 * 15 14 13 44 44 H 1.09001 * 109.47380 * 74.99813 * 19 18 16 45 45 H 0.96698 * 114.00299 * 180.02562 * 20 19 18 46 46 H 1.08004 * 120.06040 * 179.72186 * 25 18 16 47 47 H 1.08000 * 120.00333 * 179.72529 * 26 8 7 48 48 H 1.07999 * 120.00226 * 180.23160 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4856 -0.8807 1.5252 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8949 2.6197 8 6 3.4067 -2.1840 3.7827 9 6 3.9079 -2.8946 5.0135 10 7 5.3729 -2.8958 5.0142 11 6 6.0458 -3.4802 6.0251 12 8 5.4372 -4.0068 6.9362 13 6 7.5230 -3.4808 6.0261 14 6 8.2246 -2.8772 4.9806 15 6 9.6033 -2.8802 4.9867 16 6 10.2930 -3.4816 6.0281 17 9 11.6439 -3.4822 6.0290 18 6 9.6011 -4.0826 7.0690 19 6 10.3577 -4.7348 8.1973 20 8 9.4712 -5.5694 8.9454 21 14 11.7430 -5.7676 7.5009 22 1 12.6643 -4.9004 6.7233 23 1 11.1805 -6.8152 6.6113 24 1 12.4882 -6.4109 8.6127 25 6 8.2230 -4.0894 7.0704 26 6 3.1717 -0.8223 3.8184 27 6 2.7164 -0.1697 2.6880 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.5739 1.7564 -0.0005 32 1 2.1206 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1205 -1.9059 -1.5212 35 1 2.1206 -0.3644 -2.4112 36 1 3.5739 -0.8779 -1.5214 37 1 2.5357 -2.7987 0.5825 38 1 3.3559 -3.9595 2.5931 39 1 3.5438 -3.9221 5.0134 40 1 3.5445 -2.3805 5.9032 41 1 5.8585 -2.4759 4.2870 42 1 7.6883 -2.4088 4.1686 43 1 10.1469 -2.4139 4.1784 44 1 10.7706 -3.9659 8.8503 45 1 9.8912 -6.0220 9.6896 46 1 7.6852 -4.5617 7.8792 47 1 3.3475 -0.2676 4.7282 48 1 2.5364 0.8949 2.7148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_12496548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:28:17 Heat of formation + Delta-G solvation = -93.401807 kcal Electronic energy + Delta-G solvation = -28524.646566 eV Core-core repulsion = 24389.602429 eV Total energy + Delta-G solvation = -4135.044137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.41526 -41.46977 -40.18610 -39.47209 -37.69187 -36.13869 -33.30009 -32.38979 -31.84516 -31.60100 -29.40629 -28.26894 -28.25677 -27.51157 -26.79930 -24.58181 -23.43528 -23.24804 -22.09233 -21.46214 -19.32752 -18.99647 -18.42020 -17.73371 -17.37313 -17.13600 -16.70000 -16.63110 -16.18183 -16.00938 -15.76741 -15.75177 -15.27827 -14.93967 -14.85560 -14.34341 -14.31677 -14.14313 -14.11375 -14.00706 -13.88518 -13.86628 -13.66327 -13.43374 -13.18877 -13.13064 -13.08936 -12.94706 -12.81979 -12.65742 -12.45473 -11.96627 -11.90547 -11.46376 -11.29722 -10.93547 -10.88267 -10.74447 -10.73512 -10.35566 -10.02645 -9.77760 -9.65891 -9.64512 -0.54250 0.01390 0.20208 0.54901 1.07988 1.38634 1.47134 1.57454 1.86719 1.88738 1.96526 2.05265 2.20526 2.56333 2.68870 2.90739 2.98311 3.10405 3.44108 3.57546 3.68056 3.76130 3.92129 4.00679 4.17566 4.18186 4.34282 4.35865 4.52495 4.57348 4.65266 4.77030 4.79764 4.85746 4.85958 4.88135 4.90303 4.91808 4.92188 4.92484 5.02859 5.05372 5.07456 5.20223 5.20779 5.43151 5.59483 5.61038 5.61147 5.64605 5.69382 5.73752 6.14934 6.36312 6.71612 7.02765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.130 2.870 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.100 4.100 7 C -0.122 4.122 8 C -0.107 4.107 9 C 0.163 3.837 10 N -0.706 5.706 11 C 0.559 3.441 12 O -0.576 6.576 13 C -0.156 4.156 14 C -0.047 4.047 15 C -0.145 4.145 16 C 0.104 3.896 17 F -0.125 7.125 18 C -0.130 4.130 19 C -0.080 4.080 20 O -0.560 6.560 21 Si 0.966 3.034 22 H -0.235 1.235 23 H -0.281 1.281 24 H -0.250 1.250 25 C -0.023 4.023 26 C -0.121 4.121 27 C -0.100 4.100 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.414 0.586 42 H 0.170 0.830 43 H 0.176 0.824 44 H 0.105 0.895 45 H 0.403 0.597 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 3.991 -4.984 6.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.317 2.683 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.118 4.118 7 C -0.140 4.140 8 C -0.108 4.108 9 C 0.040 3.960 10 N -0.358 5.358 11 C 0.348 3.652 12 O -0.457 6.457 13 C -0.159 4.159 14 C -0.066 4.066 15 C -0.163 4.163 16 C 0.084 3.916 17 F -0.104 7.104 18 C -0.132 4.132 19 C -0.190 4.190 20 O -0.370 6.370 21 Si 0.789 3.211 22 H -0.158 1.158 23 H -0.206 1.206 24 H -0.174 1.174 25 C -0.042 4.042 26 C -0.140 4.140 27 C -0.117 4.117 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.252 0.748 42 H 0.188 0.812 43 H 0.194 0.806 44 H 0.122 0.878 45 H 0.254 0.746 46 H 0.155 0.845 47 H 0.145 0.855 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.161 3.304 -5.045 6.141 hybrid contribution 0.306 -0.128 0.791 0.858 sum 1.467 3.176 -4.253 5.507 Atomic orbital electron populations 1.26348 1.22157 1.04345 1.04450 0.77103 0.64797 0.64628 0.61778 1.26282 1.06543 1.19359 1.04772 1.26289 1.06537 1.08426 1.15736 1.27948 1.02505 0.99607 1.11090 1.21370 0.97078 0.95095 0.98221 1.21351 0.99466 1.00260 0.92961 1.19765 1.02061 0.94380 0.94546 1.20180 0.79275 1.00507 0.95992 1.45852 1.07124 1.57889 1.24950 1.18383 0.87482 0.77682 0.81669 1.90797 1.70574 1.46830 1.37482 1.19997 0.92440 1.05044 0.98449 1.21471 0.93508 0.94926 0.96673 1.21394 0.94727 1.01310 0.98897 1.17911 0.77143 1.00408 0.96092 1.91584 1.28418 1.94010 1.96361 1.19495 0.94436 1.02457 0.96762 1.24599 0.99908 0.98854 0.95610 1.86392 1.38774 1.63768 1.48022 0.85703 0.77080 0.77867 0.80476 1.15782 1.20571 1.17399 1.20861 0.92390 0.93820 0.97107 1.21352 0.99436 0.93797 0.99401 1.21378 0.97070 1.00717 0.92575 0.91512 0.90844 0.91533 0.91065 0.90858 0.90970 0.91005 0.90860 0.91076 0.84478 0.85625 0.91122 0.91038 0.74766 0.81239 0.80630 0.87774 0.74554 0.84531 0.85549 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.04 8.65 113.37 0.98 3.03 16 2 Si 1.13 -8.49 12.32 68.60 0.85 -7.64 16 3 C -0.46 2.81 8.53 113.37 0.97 3.78 16 4 C -0.46 2.77 8.53 113.37 0.97 3.74 16 5 C -0.37 1.25 4.59 22.27 0.10 1.35 16 6 C -0.10 0.23 9.29 22.27 0.21 0.43 16 7 C -0.12 0.09 9.70 22.27 0.22 0.30 16 8 C -0.11 0.01 5.25 -19.87 -0.10 -0.09 16 9 C 0.16 0.30 5.80 85.63 0.50 0.80 16 10 N -0.71 -0.48 5.50 -469.82 -2.58 -3.06 16 11 C 0.56 3.97 7.77 86.75 0.67 4.65 16 12 O -0.58 -9.24 16.34 -3.92 -0.06 -9.30 16 13 C -0.16 -0.61 5.87 -20.09 -0.12 -0.73 16 14 C -0.05 0.15 9.54 22.52 0.21 0.36 16 15 C -0.14 0.41 10.01 22.28 0.22 0.64 16 16 C 0.10 0.19 6.67 22.47 0.15 0.34 16 17 F -0.13 -0.33 12.82 44.97 0.58 0.25 16 18 C -0.13 -0.54 5.15 -19.86 -0.10 -0.65 16 19 C -0.08 -0.08 2.96 71.24 0.21 0.13 16 20 O -0.56 -1.01 11.47 -148.98 -1.71 -2.72 16 21 Si 0.97 1.16 26.09 68.60 1.79 2.95 16 22 H -0.23 -0.53 5.29 99.48 0.53 0.00 16 23 H -0.28 -1.76 7.11 99.48 0.71 -1.05 16 24 H -0.25 -0.03 7.11 99.48 0.71 0.67 16 25 C -0.02 -0.16 8.91 22.52 0.20 0.04 16 26 C -0.12 0.10 9.70 22.27 0.22 0.32 16 27 C -0.10 0.24 9.29 22.27 0.21 0.44 16 28 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 29 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H 0.07 -0.43 7.96 -2.38 -0.02 -0.45 16 33 H 0.07 -0.45 7.69 -2.39 -0.02 -0.47 16 34 H 0.07 -0.44 7.69 -2.39 -0.02 -0.46 16 35 H 0.07 -0.43 7.96 -2.38 -0.02 -0.45 16 36 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 37 H 0.14 -0.81 7.43 -2.91 -0.02 -0.83 16 38 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.07 0.26 8.09 -2.38 -0.02 0.24 16 40 H 0.07 0.25 8.08 -2.39 -0.02 0.23 16 41 H 0.41 -2.10 6.49 -92.71 -0.60 -2.70 16 42 H 0.17 -1.75 6.40 -2.91 -0.02 -1.77 16 43 H 0.18 -1.52 8.06 -2.91 -0.02 -1.55 16 44 H 0.10 -0.33 7.96 -2.39 -0.02 -0.35 16 45 H 0.40 -3.02 8.74 -74.06 -0.65 -3.66 16 46 H 0.14 1.48 6.71 -2.91 -0.02 1.46 16 47 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 48 H 0.14 -0.83 7.43 -2.91 -0.02 -0.86 16 Total: 0.00 -19.90 402.88 4.87 -15.03 By element: Atomic # 1 Polarization: -14.69 SS G_CDS: 0.31 Total: -14.38 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 5.71 Total: 18.88 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -2.58 Total: -3.06 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.77 Total: -12.02 kcal Atomic # 9 Polarization: -0.33 SS G_CDS: 0.58 Total: 0.25 kcal Atomic # 14 Polarization: -7.33 SS G_CDS: 2.63 Total: -4.70 kcal Total: -19.90 4.87 -15.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_12496548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.376 kcal (2) G-P(sol) polarization free energy of solvation -19.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds