Wall clock time and date at job start Sat Mar 6 2021 16:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 N 1.46501 * 109.47472 * 270.28569 * 9 8 7 11 11 C 1.34772 * 120.00233 * 179.97438 * 10 9 8 12 12 O 1.21518 * 120.00149 * 359.97438 * 11 10 9 13 13 C 1.48169 * 119.99903 * 179.97438 * 11 10 9 14 14 C 1.39273 * 119.72065 * 179.97438 * 13 11 10 15 15 C 1.38632 * 119.06067 * 179.97438 * 14 13 11 16 16 C 1.38587 * 118.48817 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.32511 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47158 * 64.99630 * 17 16 15 19 19 Si 1.86293 * 109.47191 * 185.00131 * 17 16 15 20 20 H 1.48501 * 109.47415 * 179.97438 * 19 17 16 21 21 H 1.48508 * 109.47054 * 299.99653 * 19 17 16 22 22 H 1.48500 * 109.47308 * 59.99578 * 19 17 16 23 23 C 1.38601 * 119.34787 * 359.97438 * 16 15 14 24 24 N 1.31498 * 120.90520 * 359.74638 * 23 16 15 25 25 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 26 26 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 27 27 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 28 28 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 29 29 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 32 32 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 33 33 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 34 34 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 35 35 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 38 38 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 39 39 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 40 40 H 0.97001 * 119.99412 * 359.97438 * 10 9 8 41 41 H 1.08002 * 120.46712 * 359.95414 * 14 13 11 42 42 H 1.07995 * 120.75425 * 180.02562 * 15 14 13 43 43 H 1.09006 * 109.47053 * 304.99631 * 17 16 15 44 44 H 0.96702 * 113.99756 * 180.02562 * 18 17 16 45 45 H 1.08003 * 119.54659 * 179.97438 * 23 16 15 46 46 H 1.08001 * 120.00310 * 179.72161 * 25 8 7 47 47 H 1.07997 * 120.00460 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 7 2.7675 -3.3550 5.8102 11 6 2.9760 -4.0212 6.9631 12 8 4.1097 -4.2404 7.3417 13 6 1.8229 -4.4865 7.7689 14 6 2.0451 -5.1749 8.9590 15 6 0.9562 -5.6035 9.7024 16 6 -0.3169 -5.3278 9.2293 17 6 -1.5298 -5.7739 10.0044 18 8 -1.5734 -5.0877 11.2571 19 14 -3.0682 -5.3842 9.0288 20 1 -4.2634 -5.8243 9.7923 21 1 -3.1448 -3.9206 8.7890 22 1 -3.0228 -6.0973 7.7270 23 6 -0.4636 -4.6369 8.0368 24 7 0.5868 -4.2371 7.3542 25 6 3.1758 -0.8214 3.8172 26 6 2.7155 -0.1696 2.6883 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5211 34 1 2.1208 -0.3644 -2.4111 35 1 3.5741 -0.8786 -1.5208 36 1 2.5357 -2.7986 0.5826 37 1 3.3471 -3.9610 2.5960 38 1 4.5134 -3.7509 4.7175 39 1 4.5127 -2.2094 5.6076 40 1 1.8625 -3.1804 5.5078 41 1 3.0514 -5.3723 9.2978 42 1 1.0969 -6.1392 10.6295 43 1 -1.4736 -6.8482 10.1804 44 1 -2.3299 -5.3265 11.8102 45 1 -1.4543 -4.4207 7.6649 46 1 3.3551 -0.2660 4.7259 47 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10854838_13287726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:36:17 Heat of formation + Delta-G solvation = -52.159643 kcal Electronic energy + Delta-G solvation = -26151.969222 eV Core-core repulsion = 22422.741544 eV Total energy + Delta-G solvation = -3729.227678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79273 -40.49116 -39.67399 -37.93745 -35.95807 -34.00337 -33.00763 -32.12589 -31.88182 -29.59089 -28.45830 -28.42797 -28.27266 -26.52066 -25.00392 -23.58955 -23.46889 -22.08568 -21.68079 -19.39571 -18.76141 -18.17374 -17.53839 -16.87782 -16.65327 -16.62320 -16.21614 -15.86207 -15.79461 -15.68947 -15.08877 -14.73575 -14.53495 -14.36279 -14.27679 -14.25764 -14.11120 -14.04228 -13.97462 -13.87907 -13.53554 -13.45489 -13.26889 -13.23668 -13.11640 -12.69388 -12.56401 -12.24886 -12.13338 -11.95597 -11.38338 -11.04897 -11.01877 -10.92068 -10.85494 -10.73579 -10.51155 -10.25631 -10.01645 -9.78578 -9.66438 -0.52212 0.10635 0.19211 0.53742 0.94268 1.28416 1.35531 1.68439 1.69411 1.75507 1.83451 1.88362 2.18290 2.52995 2.70948 2.90538 3.04706 3.21299 3.56112 3.67794 3.73967 3.78672 3.91113 3.91784 4.12515 4.21463 4.24226 4.39401 4.50459 4.55461 4.66856 4.67897 4.68772 4.70495 4.74117 4.74481 4.75344 4.78493 4.90069 5.00023 5.02020 5.16195 5.36330 5.39339 5.40633 5.45069 5.49100 5.52480 5.61906 5.64565 6.11251 6.36114 6.39211 6.67609 7.17825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.362 4.362 6 C -0.090 4.090 7 C -0.110 4.110 8 C -0.102 4.102 9 C 0.158 3.842 10 N -0.706 5.706 11 C 0.572 3.428 12 O -0.529 6.529 13 C 0.080 3.920 14 C -0.107 4.107 15 C -0.050 4.050 16 C -0.105 4.105 17 C -0.081 4.081 18 O -0.543 6.543 19 Si 0.938 3.062 20 H -0.249 1.249 21 H -0.243 1.243 22 H -0.244 1.244 23 C 0.099 3.901 24 N -0.452 5.452 25 C -0.110 4.110 26 C -0.090 4.090 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.413 0.587 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.084 0.916 44 H 0.385 0.615 45 H 0.158 0.842 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 -0.831 -0.845 4.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.404 4.404 6 C -0.108 4.108 7 C -0.129 4.129 8 C -0.102 4.102 9 C 0.036 3.964 10 N -0.358 5.358 11 C 0.357 3.643 12 O -0.405 6.405 13 C -0.058 4.058 14 C -0.128 4.128 15 C -0.076 4.076 16 C -0.107 4.107 17 C -0.192 4.192 18 O -0.349 6.349 19 Si 0.760 3.240 20 H -0.173 1.173 21 H -0.166 1.166 22 H -0.168 1.168 23 C -0.061 4.061 24 N -0.163 5.163 25 C -0.129 4.129 26 C -0.108 4.108 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.250 0.750 41 H 0.172 0.828 42 H 0.166 0.834 43 H 0.102 0.898 44 H 0.233 0.767 45 H 0.175 0.825 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.820 -0.086 -2.038 4.331 hybrid contribution -0.396 -0.835 1.329 1.618 sum -4.216 -0.921 -0.710 4.373 Atomic orbital electron populations 1.26124 1.20467 1.04578 1.04496 0.78176 0.66850 0.66102 0.63720 1.26141 1.06479 1.18585 1.04565 1.26140 1.06481 1.08049 1.15097 1.27451 1.03212 0.99539 1.10221 1.21087 0.97354 0.94645 0.97736 1.21179 0.99110 0.99737 0.92874 1.19824 1.01363 0.94201 0.94825 1.20293 0.88107 0.98771 0.89268 1.45903 1.11001 1.56617 1.22295 1.17849 0.87472 0.78142 0.80824 1.90820 1.22536 1.56706 1.70454 1.21138 0.91338 0.98678 0.94692 1.22218 1.01399 0.95652 0.93514 1.21530 0.90802 0.96184 0.99061 1.20544 0.95378 0.98857 0.95935 1.24666 1.04357 0.99103 0.91090 1.86502 1.52051 1.67483 1.28903 0.85830 0.76006 0.82251 0.79941 1.17315 1.16579 1.16780 1.22589 0.97649 0.94173 0.91700 1.67529 0.98339 1.17735 1.32705 1.21185 0.99063 0.93884 0.98752 1.21088 0.97316 0.99737 0.92669 0.91161 0.91045 0.91169 0.91046 0.90955 0.91176 0.91180 0.90954 0.91044 0.85985 0.86122 0.90209 0.90213 0.75018 0.82850 0.83366 0.89831 0.76729 0.82499 0.86113 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.71 8.65 101.05 0.87 1.58 16 2 Si 1.06 -2.76 12.32 -169.99 -2.09 -4.86 16 3 C -0.45 0.81 8.53 101.05 0.86 1.67 16 4 C -0.45 0.83 8.53 101.05 0.86 1.69 16 5 C -0.36 0.14 4.59 -39.58 -0.18 -0.04 16 6 C -0.09 -0.01 9.29 -39.58 -0.37 -0.37 16 7 C -0.11 -0.08 9.70 -39.58 -0.38 -0.46 16 8 C -0.10 -0.10 5.25 -104.63 -0.55 -0.65 16 9 C 0.16 0.22 5.80 -5.19 -0.03 0.19 16 10 N -0.71 -1.46 5.54 -62.32 -0.35 -1.80 16 11 C 0.57 2.30 7.81 -12.18 -0.10 2.20 16 12 O -0.53 -3.52 16.32 5.35 0.09 -3.43 16 13 C 0.08 0.25 6.75 -83.01 -0.56 -0.31 16 14 C -0.11 -0.19 9.63 -39.05 -0.38 -0.57 16 15 C -0.05 -0.02 9.83 -39.31 -0.39 -0.41 16 16 C -0.10 -0.05 5.40 -104.36 -0.56 -0.61 16 17 C -0.08 0.15 2.81 36.00 0.10 0.26 16 18 O -0.54 0.70 12.82 -35.23 -0.45 0.25 16 19 Si 0.94 -1.93 25.16 -169.99 -4.28 -6.21 16 20 H -0.25 0.48 7.11 56.52 0.40 0.88 16 21 H -0.24 0.17 7.04 56.52 0.40 0.56 16 22 H -0.24 0.36 7.11 56.52 0.40 0.76 16 23 C 0.10 0.12 9.84 -17.56 -0.17 -0.05 16 24 N -0.45 -1.19 9.54 -9.80 -0.09 -1.28 16 25 C -0.11 -0.08 9.70 -39.58 -0.38 -0.47 16 26 C -0.09 -0.01 9.29 -39.58 -0.37 -0.38 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.14 7.69 -51.93 -0.40 -0.53 16 33 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 36 H 0.12 -0.21 7.43 -52.49 -0.39 -0.60 16 37 H 0.12 -0.04 8.06 -52.48 -0.42 -0.46 16 38 H 0.08 0.12 8.09 -51.93 -0.42 -0.30 16 39 H 0.08 0.13 8.09 -51.93 -0.42 -0.29 16 40 H 0.41 0.54 7.79 -40.82 -0.32 0.22 16 41 H 0.15 0.17 7.64 -52.49 -0.40 -0.23 16 42 H 0.15 -0.24 8.06 -52.49 -0.42 -0.67 16 43 H 0.08 -0.33 7.96 -51.93 -0.41 -0.74 16 44 H 0.38 -2.18 8.74 45.56 0.40 -1.78 16 45 H 0.16 -0.10 4.88 -52.48 -0.26 -0.35 16 46 H 0.12 -0.02 8.06 -52.49 -0.42 -0.45 16 47 H 0.12 -0.20 7.43 -52.49 -0.39 -0.59 16 LS Contribution 397.71 15.07 5.99 5.99 Total: 0.00 -7.58 397.71 -9.27 -16.86 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: -6.37 Total: -8.79 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.72 Total: 3.28 kcal Atomic # 7 Polarization: -2.65 SS G_CDS: -0.44 Total: -3.09 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: -0.36 Total: -3.18 kcal Atomic # 14 Polarization: -4.69 SS G_CDS: -6.37 Total: -11.07 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -7.58 -9.27 -16.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_13287726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.303 kcal (2) G-P(sol) polarization free energy of solvation -7.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds