Wall clock time and date at job start Sat Mar 6 2021 16:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 N 1.46501 * 109.47472 * 270.28569 * 9 8 7 11 11 C 1.34772 * 120.00233 * 179.97438 * 10 9 8 12 12 O 1.21518 * 120.00149 * 359.97438 * 11 10 9 13 13 C 1.48169 * 119.99903 * 179.97438 * 11 10 9 14 14 C 1.39273 * 119.72065 * 179.97438 * 13 11 10 15 15 C 1.38632 * 119.06067 * 179.97438 * 14 13 11 16 16 C 1.38587 * 118.48817 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.32511 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47158 * 64.99630 * 17 16 15 19 19 Si 1.86293 * 109.47191 * 185.00131 * 17 16 15 20 20 H 1.48501 * 109.47415 * 179.97438 * 19 17 16 21 21 H 1.48508 * 109.47054 * 299.99653 * 19 17 16 22 22 H 1.48500 * 109.47308 * 59.99578 * 19 17 16 23 23 C 1.38601 * 119.34787 * 359.97438 * 16 15 14 24 24 N 1.31498 * 120.90520 * 359.74638 * 23 16 15 25 25 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 26 26 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 27 27 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 28 28 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 29 29 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 32 32 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 33 33 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 34 34 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 35 35 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 38 38 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 39 39 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 40 40 H 0.97001 * 119.99412 * 359.97438 * 10 9 8 41 41 H 1.08002 * 120.46712 * 359.95414 * 14 13 11 42 42 H 1.07995 * 120.75425 * 180.02562 * 15 14 13 43 43 H 1.09006 * 109.47053 * 304.99631 * 17 16 15 44 44 H 0.96702 * 113.99756 * 180.02562 * 18 17 16 45 45 H 1.08003 * 119.54659 * 179.97438 * 23 16 15 46 46 H 1.08001 * 120.00310 * 179.72161 * 25 8 7 47 47 H 1.07997 * 120.00460 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 7 2.7675 -3.3550 5.8102 11 6 2.9760 -4.0212 6.9631 12 8 4.1097 -4.2404 7.3417 13 6 1.8229 -4.4865 7.7689 14 6 2.0451 -5.1749 8.9590 15 6 0.9562 -5.6035 9.7024 16 6 -0.3169 -5.3278 9.2293 17 6 -1.5298 -5.7739 10.0044 18 8 -1.5734 -5.0877 11.2571 19 14 -3.0682 -5.3842 9.0288 20 1 -4.2634 -5.8243 9.7923 21 1 -3.1448 -3.9206 8.7890 22 1 -3.0228 -6.0973 7.7270 23 6 -0.4636 -4.6369 8.0368 24 7 0.5868 -4.2371 7.3542 25 6 3.1758 -0.8214 3.8172 26 6 2.7155 -0.1696 2.6883 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5211 34 1 2.1208 -0.3644 -2.4111 35 1 3.5741 -0.8786 -1.5208 36 1 2.5357 -2.7986 0.5826 37 1 3.3471 -3.9610 2.5960 38 1 4.5134 -3.7509 4.7175 39 1 4.5127 -2.2094 5.6076 40 1 1.8625 -3.1804 5.5078 41 1 3.0514 -5.3723 9.2978 42 1 1.0969 -6.1392 10.6295 43 1 -1.4736 -6.8482 10.1804 44 1 -2.3299 -5.3265 11.8102 45 1 -1.4543 -4.4207 7.6649 46 1 3.3551 -0.2660 4.7259 47 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_13287726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:36:16 Heat of formation + Delta-G solvation = -47.423387 kcal Electronic energy + Delta-G solvation = -26151.763843 eV Core-core repulsion = 22422.741544 eV Total energy + Delta-G solvation = -3729.022298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.92662 -40.60269 -39.79379 -37.81265 -36.17003 -34.04530 -33.10551 -32.18927 -31.87434 -29.44075 -28.31962 -28.29061 -28.26119 -26.56173 -25.07628 -23.62878 -23.46755 -22.12048 -21.87739 -19.54535 -18.63676 -18.22317 -17.54577 -16.87417 -16.80997 -16.79470 -16.27924 -15.96552 -15.79537 -15.62484 -15.17534 -14.81787 -14.46273 -14.33442 -14.27538 -14.17093 -14.01151 -13.98525 -13.92663 -13.78695 -13.60420 -13.48861 -13.11316 -13.11114 -12.96377 -12.68331 -12.50055 -12.11027 -12.05432 -11.93747 -11.62538 -11.08061 -10.93596 -10.83868 -10.75484 -10.75405 -10.53988 -10.32822 -10.13095 -9.80428 -9.67030 -0.63880 0.03742 0.17716 0.52166 1.11367 1.44536 1.45951 1.53910 1.84393 1.90326 1.91027 2.03049 2.16613 2.59057 2.67033 2.84215 3.00733 3.31178 3.56529 3.62506 3.69314 3.80776 3.88591 3.89802 4.14109 4.17831 4.32058 4.38502 4.52556 4.54165 4.55397 4.73768 4.84857 4.84923 4.85114 4.89030 4.89721 4.90107 4.90896 4.96751 5.00246 5.16328 5.17044 5.34508 5.39877 5.57901 5.59555 5.61480 5.68182 5.71271 6.12229 6.18236 6.53114 6.78661 6.93087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.128 2.872 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.100 4.100 7 C -0.122 4.122 8 C -0.109 4.109 9 C 0.161 3.839 10 N -0.697 5.697 11 C 0.570 3.430 12 O -0.564 6.564 13 C 0.059 3.941 14 C -0.112 4.112 15 C -0.048 4.048 16 C -0.105 4.105 17 C -0.078 4.078 18 O -0.561 6.561 19 Si 0.967 3.033 20 H -0.247 1.247 21 H -0.266 1.266 22 H -0.254 1.254 23 C 0.087 3.913 24 N -0.464 5.464 25 C -0.123 4.123 26 C -0.100 4.100 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.417 0.583 41 H 0.155 0.845 42 H 0.172 0.828 43 H 0.111 0.889 44 H 0.403 0.597 45 H 0.171 0.829 46 H 0.125 0.875 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 -1.105 -0.807 5.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.118 4.118 7 C -0.141 4.141 8 C -0.110 4.110 9 C 0.039 3.961 10 N -0.348 5.348 11 C 0.355 3.645 12 O -0.443 6.443 13 C -0.078 4.078 14 C -0.133 4.133 15 C -0.074 4.074 16 C -0.107 4.107 17 C -0.188 4.188 18 O -0.370 6.370 19 Si 0.790 3.210 20 H -0.171 1.171 21 H -0.191 1.191 22 H -0.178 1.178 23 C -0.073 4.073 24 N -0.175 5.175 25 C -0.141 4.141 26 C -0.118 4.118 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.254 0.746 41 H 0.173 0.827 42 H 0.189 0.811 43 H 0.129 0.871 44 H 0.255 0.745 45 H 0.187 0.813 46 H 0.143 0.857 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.001 -0.367 -1.993 5.396 hybrid contribution -0.108 -0.732 1.320 1.513 sum -5.109 -1.098 -0.673 5.269 Atomic orbital electron populations 1.26289 1.21629 1.04466 1.04545 0.77143 0.65141 0.64541 0.61641 1.26293 1.06411 1.19488 1.04833 1.26286 1.06414 1.08498 1.15786 1.28022 1.02463 0.99621 1.11135 1.21385 0.97113 0.95141 0.98148 1.21356 0.99388 1.00200 0.93125 1.19788 1.02105 0.94412 0.94655 1.20269 0.87862 0.98553 0.89441 1.45904 1.11403 1.55720 1.21759 1.18085 0.87409 0.77881 0.81103 1.90786 1.23783 1.58319 1.71380 1.21072 0.91238 1.00100 0.95426 1.22340 1.02101 0.95561 0.93311 1.21806 0.90289 0.95786 0.99519 1.20866 0.96442 0.97751 0.95668 1.24671 1.02831 1.00484 0.90844 1.86452 1.53449 1.67971 1.29166 0.85425 0.75964 0.80291 0.79299 1.17074 1.19117 1.17775 1.22925 0.97802 0.94349 0.92260 1.67474 0.98465 1.18265 1.33327 1.21355 0.99427 0.93950 0.99415 1.21379 0.97126 1.00710 0.92607 0.91424 0.90706 0.91381 0.91321 0.90690 0.90960 0.90909 0.90690 0.91311 0.84310 0.85606 0.90559 0.90683 0.74578 0.82735 0.81082 0.87121 0.74528 0.81252 0.85726 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.68 8.65 113.37 0.98 2.66 16 2 Si 1.13 -6.54 12.32 68.60 0.85 -5.70 16 3 C -0.46 1.94 8.53 113.37 0.97 2.91 16 4 C -0.46 2.00 8.53 113.37 0.97 2.96 16 5 C -0.37 0.32 4.59 22.27 0.10 0.43 16 6 C -0.10 -0.03 9.29 22.27 0.21 0.18 16 7 C -0.12 -0.28 9.70 22.27 0.22 -0.06 16 8 C -0.11 -0.36 5.25 -19.87 -0.10 -0.46 16 9 C 0.16 0.76 5.80 85.63 0.50 1.26 16 10 N -0.70 -4.22 5.54 -469.39 -2.60 -6.82 16 11 C 0.57 5.77 7.81 86.88 0.68 6.45 16 12 O -0.56 -8.84 16.32 -3.77 -0.06 -8.90 16 13 C 0.06 0.45 6.75 41.90 0.28 0.74 16 14 C -0.11 -0.51 9.63 22.61 0.22 -0.29 16 15 C -0.05 -0.02 9.83 22.45 0.22 0.20 16 16 C -0.11 -0.04 5.40 -19.70 -0.11 -0.14 16 17 C -0.08 0.40 2.81 71.23 0.20 0.60 16 18 O -0.56 2.28 12.82 -148.98 -1.91 0.37 16 19 Si 0.97 -4.62 25.16 68.60 1.73 -2.90 16 20 H -0.25 1.26 7.11 99.48 0.71 1.97 16 21 H -0.27 0.26 7.04 99.48 0.70 0.96 16 22 H -0.25 0.84 7.11 99.48 0.71 1.55 16 23 C 0.09 0.25 9.84 84.83 0.83 1.08 16 24 N -0.46 -2.98 9.54 -184.91 -1.76 -4.75 16 25 C -0.12 -0.31 9.70 22.27 0.22 -0.09 16 26 C -0.10 -0.05 9.29 22.27 0.21 0.16 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 32 H 0.07 -0.32 7.69 -2.38 -0.02 -0.34 16 33 H 0.07 -0.34 7.69 -2.38 -0.02 -0.36 16 34 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 35 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 36 H 0.14 -0.53 7.43 -2.91 -0.02 -0.55 16 37 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 38 H 0.08 0.40 8.09 -2.38 -0.02 0.38 16 39 H 0.07 0.41 8.09 -2.39 -0.02 0.39 16 40 H 0.42 1.82 7.79 -92.71 -0.72 1.09 16 41 H 0.15 0.56 7.64 -2.91 -0.02 0.54 16 42 H 0.17 -0.80 8.06 -2.91 -0.02 -0.83 16 43 H 0.11 -1.14 7.96 -2.38 -0.02 -1.16 16 44 H 0.40 -5.26 8.74 -74.06 -0.65 -5.90 16 45 H 0.17 -0.13 4.88 -2.91 -0.01 -0.15 16 46 H 0.12 0.11 8.06 -2.91 -0.02 0.08 16 47 H 0.14 -0.48 7.43 -2.91 -0.02 -0.50 16 Total: 0.00 -18.09 397.71 3.19 -14.90 By element: Atomic # 1 Polarization: -5.15 SS G_CDS: 0.37 Total: -4.79 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.58 Total: 18.58 kcal Atomic # 7 Polarization: -7.20 SS G_CDS: -4.36 Total: -11.56 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -1.97 Total: -8.53 kcal Atomic # 14 Polarization: -11.17 SS G_CDS: 2.57 Total: -8.60 kcal Total: -18.09 3.19 -14.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_13287726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.525 kcal (2) G-P(sol) polarization free energy of solvation -18.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds