Wall clock time and date at job start Sat Mar 6 2021 16:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47178 * 2 1 4 4 C 1.86298 * 109.46970 * 239.99606 * 2 1 3 5 5 C 1.86799 * 109.46962 * 119.99548 * 2 1 3 6 6 C 1.38238 * 119.99768 * 90.00159 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 C 1.34770 * 119.99664 * 179.97438 * 10 9 8 12 12 O 1.21550 * 120.00750 * 0.02562 * 11 10 9 13 13 C 1.47846 * 119.99916 * 179.97438 * 11 10 9 14 14 C 1.39984 * 120.56351 * 180.02562 * 13 11 10 15 15 C 1.38393 * 118.29093 * 179.97438 * 14 13 11 16 16 C 1.50693 * 120.34922 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47113 * 65.00547 * 16 15 14 18 18 Si 1.86300 * 109.47189 * 185.00055 * 16 15 14 19 19 H 1.48497 * 109.47257 * 300.00169 * 18 16 15 20 20 H 1.48499 * 109.46878 * 60.00568 * 18 16 15 21 21 H 1.48507 * 109.46999 * 180.02562 * 18 16 15 22 22 C 1.38309 * 119.30367 * 0.02562 * 15 14 13 23 23 N 1.31957 * 121.08045 * 359.97438 * 22 15 14 24 24 C 1.31663 * 121.88360 * 359.72708 * 23 22 15 25 25 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 26 26 C 1.38234 * 120.00169 * 270.02385 * 5 2 1 27 27 H 1.09006 * 109.47606 * 300.00755 * 1 2 3 28 28 H 1.09001 * 109.47017 * 60.00247 * 1 2 3 29 29 H 1.09004 * 109.47654 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47074 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46492 * 299.99514 * 3 2 1 32 32 H 1.08993 * 109.47520 * 59.99489 * 3 2 1 33 33 H 1.09003 * 109.47232 * 299.99789 * 4 2 1 34 34 H 1.08991 * 109.47125 * 60.00223 * 4 2 1 35 35 H 1.09007 * 109.46666 * 180.02562 * 4 2 1 36 36 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 37 37 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 39 39 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 40 40 H 0.97000 * 120.00105 * 359.97438 * 10 9 8 41 41 H 1.08007 * 120.85087 * 359.95590 * 14 13 11 42 42 H 1.08996 * 109.47438 * 305.00732 * 16 15 14 43 43 H 0.96690 * 114.00814 * 179.97438 * 17 16 15 44 44 H 1.08002 * 119.46407 * 179.97438 * 22 15 14 45 45 H 1.07997 * 119.72127 * 180.27116 * 24 23 22 46 46 H 1.08004 * 119.99934 * 179.72684 * 25 8 7 47 47 H 1.07999 * 120.00005 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8805 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4055 -2.1839 3.7832 9 6 3.9068 -2.8945 5.0141 10 7 5.3718 -2.8946 5.0154 11 6 6.0447 -3.4779 6.0270 12 8 5.4362 -4.0043 6.9380 13 6 7.5231 -3.4785 6.0281 14 6 8.2340 -4.0813 7.0725 15 6 9.6168 -4.0549 7.0257 16 6 10.4282 -4.6902 8.1252 17 8 10.2044 -6.1016 8.1276 18 14 12.2371 -4.3488 7.8388 19 1 12.6469 -4.9172 6.5296 20 1 12.4696 -2.8822 7.8365 21 1 13.0366 -4.9755 8.9221 22 6 10.2464 -3.4392 5.9592 23 7 9.5503 -2.8788 4.9883 24 6 8.2337 -2.8829 4.9848 25 6 3.1697 -0.8223 3.8191 26 6 2.7155 -0.1696 2.6883 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1207 2.2702 -0.8901 32 1 2.1206 2.2703 0.8899 33 1 2.1206 -1.9060 -1.5210 34 1 2.1206 -0.3646 -2.4110 35 1 3.5740 -0.8787 -1.5208 36 1 2.5356 -2.7987 0.5827 37 1 3.3558 -3.9594 2.5934 38 1 3.5427 -2.3807 5.9038 39 1 3.5434 -3.9222 5.0136 40 1 5.8575 -2.4748 4.2882 41 1 7.7164 -4.5546 7.8939 42 1 10.1273 -4.2732 9.0862 43 1 10.6964 -6.5768 8.8110 44 1 11.3255 -3.4167 5.9203 45 1 7.6989 -2.4175 4.1700 46 1 3.3447 -0.2677 4.7292 47 1 2.5355 0.8950 2.7150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_13287814.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:37:21 Heat of formation + Delta-G solvation = -47.309830 kcal Electronic energy + Delta-G solvation = -26142.792834 eV Core-core repulsion = 22413.775460 eV Total energy + Delta-G solvation = -3729.017374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.95473 -40.61366 -39.78497 -37.87202 -36.18797 -33.90249 -33.59488 -31.98461 -31.85213 -29.41789 -28.27730 -28.26170 -27.54946 -27.26457 -25.17322 -23.76542 -23.44466 -22.10672 -21.65038 -19.23693 -18.64825 -18.19577 -18.12759 -17.26739 -16.75445 -16.72850 -16.15822 -15.88204 -15.78257 -15.64422 -15.08106 -14.84100 -14.57463 -14.32198 -14.31737 -14.17810 -14.02759 -13.93968 -13.86166 -13.79757 -13.61402 -13.44277 -13.13630 -13.09963 -12.95351 -12.67326 -12.64072 -12.11646 -12.03645 -11.91444 -11.58013 -11.11309 -10.91156 -10.76577 -10.74284 -10.74155 -10.56355 -10.31711 -10.17490 -9.78390 -9.65508 -0.64165 -0.06514 0.18978 0.54227 1.08973 1.44323 1.50497 1.58827 1.85594 1.87411 1.92648 2.04326 2.17873 2.55183 2.68204 2.95931 3.04275 3.25559 3.51694 3.63744 3.65619 3.67304 3.77255 3.91229 4.08934 4.16956 4.20034 4.34925 4.48045 4.56358 4.59153 4.76219 4.79115 4.85377 4.85461 4.88496 4.89671 4.91015 4.91369 4.91722 5.02044 5.13962 5.19414 5.27194 5.42218 5.60171 5.60502 5.63524 5.68820 5.72926 6.14149 6.27450 6.57222 6.76470 6.93963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.129 2.871 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.101 4.101 7 C -0.122 4.122 8 C -0.108 4.108 9 C 0.164 3.836 10 N -0.705 5.705 11 C 0.567 3.433 12 O -0.571 6.571 13 C -0.196 4.196 14 C 0.003 3.997 15 C -0.138 4.138 16 C -0.083 4.083 17 O -0.564 6.564 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.250 1.250 21 H -0.246 1.246 22 C 0.115 3.885 23 N -0.495 5.495 24 C 0.144 3.856 25 C -0.121 4.121 26 C -0.100 4.100 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.413 0.587 41 H 0.146 0.854 42 H 0.102 0.898 43 H 0.402 0.598 44 H 0.170 0.830 45 H 0.189 0.811 46 H 0.127 0.873 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 2.723 -2.048 3.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.316 2.684 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.118 4.118 7 C -0.140 4.140 8 C -0.109 4.109 9 C 0.041 3.959 10 N -0.357 5.357 11 C 0.354 3.646 12 O -0.451 6.451 13 C -0.201 4.201 14 C -0.024 4.024 15 C -0.140 4.140 16 C -0.193 4.193 17 O -0.373 6.373 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.174 1.174 21 H -0.170 1.170 22 C -0.041 4.041 23 N -0.202 5.202 24 C -0.015 4.015 25 C -0.140 4.140 26 C -0.118 4.118 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.251 0.749 41 H 0.164 0.836 42 H 0.119 0.881 43 H 0.253 0.747 44 H 0.187 0.813 45 H 0.206 0.794 46 H 0.145 0.855 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.731 3.038 -2.660 4.393 hybrid contribution -0.469 -0.723 1.193 1.472 sum 1.262 2.315 -1.467 3.017 Atomic orbital electron populations 1.26333 1.22005 1.04376 1.04482 0.77111 0.64890 0.64596 0.61759 1.26286 1.06498 1.19409 1.04792 1.26294 1.06492 1.08451 1.15795 1.27952 1.02486 0.99612 1.11106 1.21376 0.97109 0.95105 0.98241 1.21361 0.99420 1.00289 0.92970 1.19775 1.02128 0.94394 0.94591 1.20208 0.78916 1.00667 0.96069 1.45873 1.07351 1.57733 1.24761 1.18146 0.86826 0.77816 0.81837 1.90795 1.70286 1.46679 1.37337 1.21000 0.93818 1.05890 0.99356 1.21691 0.93284 0.90843 0.96547 1.20544 0.94345 1.01045 0.98082 1.24776 1.10543 0.84748 0.99184 1.86455 1.73224 1.16936 1.60720 0.85326 0.73070 0.80952 0.80968 1.18693 1.17417 1.16987 1.23157 1.01202 0.91521 0.88191 1.67778 1.08637 1.17655 1.26169 1.23401 0.89780 0.92444 0.95861 1.21362 0.99371 0.93800 0.99417 1.21381 0.97104 1.00721 0.92594 0.91464 0.90821 0.91494 0.91153 0.90837 0.90939 0.90990 0.90833 0.91169 0.84502 0.85583 0.90731 0.90884 0.74881 0.83595 0.88054 0.74657 0.81315 0.79438 0.85457 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.92 8.65 113.37 0.98 2.90 16 2 Si 1.13 -7.88 12.32 68.60 0.85 -7.03 16 3 C -0.46 2.52 8.53 113.37 0.97 3.49 16 4 C -0.46 2.46 8.53 113.37 0.97 3.43 16 5 C -0.37 1.05 4.59 22.27 0.10 1.15 16 6 C -0.10 0.18 9.29 22.27 0.21 0.38 16 7 C -0.12 0.05 9.70 22.27 0.22 0.26 16 8 C -0.11 0.00 5.25 -19.86 -0.10 -0.10 16 9 C 0.16 0.23 5.80 85.63 0.50 0.73 16 10 N -0.71 -0.47 5.50 -469.70 -2.58 -3.06 16 11 C 0.57 3.67 7.78 86.79 0.68 4.35 16 12 O -0.57 -8.19 16.42 -3.87 -0.06 -8.25 16 13 C -0.20 -0.86 5.89 -19.99 -0.12 -0.98 16 14 C 0.00 0.01 9.38 22.73 0.21 0.23 16 15 C -0.14 -0.39 5.38 -19.81 -0.11 -0.50 16 16 C -0.08 0.17 2.81 71.23 0.20 0.37 16 17 O -0.56 0.32 12.82 -148.98 -1.91 -1.59 16 18 Si 0.97 -3.47 25.16 68.60 1.73 -1.74 16 19 H -0.26 0.12 7.04 99.48 0.70 0.82 16 20 H -0.25 0.68 7.11 99.48 0.71 1.38 16 21 H -0.25 0.97 7.11 99.48 0.71 1.68 16 22 C 0.12 0.36 9.84 84.69 0.83 1.20 16 23 N -0.49 -2.26 10.35 -194.75 -2.01 -4.27 16 24 C 0.14 0.21 10.71 85.04 0.91 1.12 16 25 C -0.12 0.08 9.70 22.27 0.22 0.29 16 26 C -0.10 0.19 9.29 22.27 0.21 0.40 16 27 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 28 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 30 H 0.07 -0.35 7.96 -2.38 -0.02 -0.36 16 31 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 32 H 0.07 -0.42 7.69 -2.39 -0.02 -0.43 16 33 H 0.07 -0.40 7.69 -2.39 -0.02 -0.42 16 34 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 35 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 36 H 0.14 -0.73 7.43 -2.91 -0.02 -0.75 16 37 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 38 H 0.07 0.20 8.08 -2.39 -0.02 0.18 16 39 H 0.07 0.22 8.09 -2.39 -0.02 0.20 16 40 H 0.41 -1.76 6.53 -92.71 -0.61 -2.36 16 41 H 0.15 0.90 7.74 -2.91 -0.02 0.87 16 42 H 0.10 -0.62 7.96 -2.39 -0.02 -0.64 16 43 H 0.40 -3.97 8.74 -74.06 -0.65 -4.62 16 44 H 0.17 -0.08 4.87 -2.91 -0.01 -0.10 16 45 H 0.19 -1.03 6.42 -2.91 -0.02 -1.05 16 46 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 47 H 0.14 -0.77 7.43 -2.91 -0.02 -0.79 16 Total: 0.00 -19.61 395.49 3.35 -16.26 By element: Atomic # 1 Polarization: -9.52 SS G_CDS: 0.49 Total: -9.03 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.86 Total: 18.72 kcal Atomic # 7 Polarization: -2.73 SS G_CDS: -4.60 Total: -7.33 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.97 Total: -9.84 kcal Atomic # 14 Polarization: -11.34 SS G_CDS: 2.57 Total: -8.77 kcal Total: -19.61 3.35 -16.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_13287814.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.054 kcal (2) G-P(sol) polarization free energy of solvation -19.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds