Wall clock time and date at job start Sat Mar 6 2021 16:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36418 * 125.80039 * 2 1 4 4 C 1.47384 * 127.19259 * 0.02562 * 3 2 1 5 5 O 1.21616 * 120.00043 * 359.71119 * 4 3 2 6 6 N 1.34772 * 120.00123 * 179.70982 * 4 3 2 7 7 C 1.46501 * 120.00233 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47472 * 179.97438 * 7 6 4 9 9 C 1.38228 * 120.00200 * 270.28569 * 8 7 6 10 10 C 1.38238 * 120.00120 * 180.23540 * 9 8 7 11 11 C 1.38234 * 119.99675 * 359.47825 * 10 9 8 12 12 Si 1.86803 * 119.99940 * 180.28096 * 11 10 9 13 13 C 1.86301 * 109.46852 * 90.00443 * 12 11 10 14 14 C 1.86305 * 109.47191 * 210.00145 * 12 11 10 15 15 C 1.86296 * 109.47316 * 330.00190 * 12 11 10 16 16 C 1.38234 * 120.00240 * 0.26327 * 11 10 9 17 17 C 1.38234 * 119.99739 * 89.99934 * 8 7 6 18 18 C 1.47015 * 105.61629 * 179.75155 * 3 2 1 19 19 C 1.34170 * 105.95534 * 0.22056 * 18 3 2 20 20 C 1.50708 * 125.44196 * 180.02562 * 19 18 3 21 21 O 1.42900 * 109.46674 * 300.00345 * 20 19 18 22 22 Si 1.86296 * 109.47133 * 180.02562 * 20 19 18 23 23 H 1.48500 * 109.47639 * 60.00173 * 22 20 19 24 24 H 1.48502 * 109.46599 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46907 * 299.99552 * 22 20 19 26 26 O 1.33653 * 125.80542 * 180.13272 * 2 1 3 27 27 H 1.09006 * 109.46786 * 90.00301 * 1 2 3 28 28 H 1.08995 * 109.47077 * 210.00221 * 1 2 3 29 29 H 1.09005 * 109.47379 * 330.00553 * 1 2 3 30 30 H 0.97001 * 120.00355 * 0.02562 * 6 4 3 31 31 H 1.09007 * 109.46851 * 59.99959 * 7 6 4 32 32 H 1.08998 * 109.47589 * 300.00398 * 7 6 4 33 33 H 1.08004 * 120.00256 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.00519 * 179.76445 * 10 9 8 35 35 H 1.08992 * 109.47179 * 60.00150 * 13 12 11 36 36 H 1.09007 * 109.47049 * 179.97438 * 13 12 11 37 37 H 1.08994 * 109.47120 * 299.99515 * 13 12 11 38 38 H 1.09002 * 109.46698 * 60.00064 * 14 12 11 39 39 H 1.08998 * 109.47017 * 180.02562 * 14 12 11 40 40 H 1.09004 * 109.46851 * 300.00496 * 14 12 11 41 41 H 1.09006 * 109.46796 * 60.00075 * 15 12 11 42 42 H 1.08998 * 109.47288 * 179.97438 * 15 12 11 43 43 H 1.09002 * 109.47253 * 300.00352 * 15 12 11 44 44 H 1.07997 * 120.00460 * 180.02562 * 16 11 10 45 45 H 1.08001 * 120.00310 * 0.02562 * 17 8 7 46 46 H 1.08010 * 127.02600 * 180.20510 * 18 3 2 47 47 H 1.08997 * 109.46993 * 60.00087 * 20 19 18 48 48 H 0.96696 * 114.00139 * 299.99353 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5158 0.0005 5 8 0.6889 2.7893 -0.0043 6 7 2.7929 3.5016 0.0064 7 6 2.3644 4.9026 0.0063 8 6 3.5761 5.7985 0.0141 9 6 4.1291 6.2028 1.2147 10 6 5.2377 7.0286 1.2218 11 6 5.7997 7.4414 0.0282 12 14 7.3024 8.5510 0.0377 13 6 8.8453 7.5068 0.0433 14 6 7.2879 9.6293 -1.4815 15 6 7.2728 9.6235 1.5607 16 6 5.2499 7.0328 -1.1725 17 6 4.1381 6.2113 -1.1795 18 6 3.6848 0.5992 0.0061 19 6 3.5859 -0.7389 0.0042 20 6 4.7460 -1.7009 0.0094 21 8 5.5488 -1.4851 -1.1530 22 14 4.1027 -3.4493 0.0033 23 1 3.2816 -3.6706 -1.2140 24 1 5.2459 -4.3972 0.0090 25 1 3.2682 -3.6738 1.2109 26 8 2.2889 -1.0839 -0.0025 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8901 0.5138 30 1 3.7381 3.2836 0.0098 31 1 1.7625 5.0984 0.8938 32 1 1.7710 5.1011 -0.8862 33 1 3.6926 5.8769 2.1473 34 1 5.6676 7.3476 2.1598 35 1 8.8626 6.8794 -0.8477 36 1 9.7222 8.1542 0.0484 37 1 8.8538 6.8760 0.9321 38 1 6.3851 10.2402 -1.4848 39 1 8.1650 10.2764 -1.4762 40 1 7.3051 9.0017 -2.3726 41 1 7.2814 8.9926 2.4496 42 1 8.1499 10.2706 1.5665 43 1 6.3701 10.2344 1.5574 44 1 5.6891 7.3549 -2.1050 45 1 3.7085 5.8920 -2.1176 46 1 4.5928 1.1841 0.0109 47 1 5.3489 -1.5383 0.9027 48 1 5.0760 -1.6128 -1.9868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10854838_13308374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:37:34 Heat of formation + Delta-G solvation = -81.782835 kcal Electronic energy + Delta-G solvation = -27200.128056 eV Core-core repulsion = 23344.585680 eV Total energy + Delta-G solvation = -3855.542376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.151 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.73197 -40.69321 -39.75242 -38.10809 -35.92506 -34.14527 -33.15343 -32.15797 -31.91800 -29.64371 -29.41760 -28.47755 -28.44657 -27.29319 -25.58332 -23.97782 -23.50315 -22.33444 -21.84515 -20.70969 -19.00756 -18.08905 -17.70887 -17.59868 -16.79500 -16.64162 -16.52543 -15.96394 -15.94848 -15.73067 -15.44130 -14.96442 -14.49889 -14.40732 -14.31670 -14.21902 -14.10962 -14.06636 -13.94491 -13.91881 -13.86308 -13.55327 -13.49762 -13.28823 -13.25632 -13.13623 -12.93917 -12.83685 -12.69708 -12.23748 -12.09543 -11.98996 -11.15952 -10.98932 -10.94067 -10.87584 -10.84528 -10.64813 -10.09175 -9.82625 -9.69701 -9.53528 0.15940 0.31854 0.49772 0.83874 0.99667 1.34155 1.41662 1.66868 1.69763 1.81240 1.86589 1.88115 2.30552 2.39347 2.50769 2.95564 3.14384 3.38857 3.64549 3.79057 3.84304 3.88776 4.09084 4.14706 4.28514 4.37220 4.43457 4.47140 4.55308 4.61714 4.65903 4.66826 4.68485 4.71320 4.72390 4.72486 4.73460 4.75953 4.83064 4.98545 5.11999 5.12617 5.23091 5.36279 5.41034 5.42746 5.47036 5.50547 5.58773 5.61233 5.92064 6.07615 6.30705 6.52833 7.25750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.095 3.905 3 C -0.252 4.252 4 C 0.592 3.408 5 O -0.540 6.540 6 N -0.719 5.719 7 C 0.162 3.838 8 C -0.102 4.102 9 C -0.112 4.112 10 C -0.090 4.090 11 C -0.362 4.362 12 Si 1.060 2.940 13 C -0.449 4.449 14 C -0.450 4.450 15 C -0.450 4.450 16 C -0.090 4.090 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.059 4.059 20 C -0.040 4.040 21 O -0.529 6.529 22 Si 0.956 3.044 23 H -0.248 1.248 24 H -0.245 1.245 25 H -0.246 1.246 26 O -0.173 6.173 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.403 0.597 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.159 0.841 47 H 0.137 0.863 48 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 0.279 -0.054 3.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 C -0.257 4.257 4 C 0.381 3.619 5 O -0.419 6.419 6 N -0.371 5.371 7 C 0.039 3.961 8 C -0.102 4.102 9 C -0.130 4.130 10 C -0.108 4.108 11 C -0.404 4.404 12 Si 1.251 2.749 13 C -0.557 4.557 14 C -0.558 4.558 15 C -0.558 4.558 16 C -0.108 4.108 17 C -0.130 4.130 18 C -0.165 4.165 19 C -0.107 4.107 20 C -0.150 4.150 21 O -0.334 6.334 22 Si 0.776 3.224 23 H -0.172 1.172 24 H -0.168 1.168 25 H -0.170 1.170 26 O -0.070 6.070 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.237 0.763 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.177 0.823 47 H 0.154 0.846 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.219 -0.580 0.384 2.325 hybrid contribution 0.192 0.453 -0.384 0.624 sum 2.411 -0.126 0.001 2.414 Atomic orbital electron populations 1.20704 0.83341 1.05446 1.04778 1.22904 0.94059 0.82814 0.96087 1.21110 0.93282 0.93719 1.17541 1.17166 0.85344 0.83669 0.75731 1.90783 1.16499 1.84007 1.50600 1.45832 1.09968 1.05494 1.75812 1.20223 0.93830 0.78669 1.03390 1.19850 0.97134 0.99400 0.93857 1.21185 0.96533 0.98006 0.97287 1.21096 0.95244 0.96242 0.98223 1.27455 1.11669 1.07120 0.94176 0.78179 0.63915 0.65464 0.67300 1.26124 1.15305 1.09618 1.04614 1.26142 1.04681 1.09934 1.15025 1.26142 1.04688 1.09878 1.15076 1.21096 0.95261 0.96278 0.98160 1.21187 0.96449 0.97996 0.97363 1.22574 0.96453 0.93429 1.04001 1.22659 0.82831 0.95803 1.09405 1.24370 0.90344 1.07443 0.92870 1.86569 1.38155 1.93334 1.15372 0.85525 0.80084 0.73969 0.82792 1.17155 1.16797 1.16957 1.83673 1.16519 1.35232 1.71595 0.88941 0.90027 0.87034 0.76277 0.90398 0.90395 0.86135 0.85978 0.91167 0.91017 0.91172 0.91047 0.90937 0.91178 0.91182 0.90936 0.91044 0.85975 0.86132 0.82315 0.84586 0.77066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.03 9.89 36.01 0.36 0.32 16 2 C 0.09 0.21 7.37 -34.96 -0.26 -0.05 16 3 C -0.25 -0.61 6.31 -103.28 -0.65 -1.26 16 4 C 0.59 1.97 7.81 -12.54 -0.10 1.87 16 5 O -0.54 -3.24 14.85 5.26 0.08 -3.16 16 6 N -0.72 -0.72 5.54 -62.58 -0.35 -1.07 16 7 C 0.16 0.14 5.80 -5.19 -0.03 0.11 16 8 C -0.10 -0.04 5.25 -104.63 -0.55 -0.59 16 9 C -0.11 -0.02 9.70 -39.58 -0.38 -0.41 16 10 C -0.09 0.03 9.29 -39.58 -0.37 -0.34 16 11 C -0.36 0.29 4.59 -39.58 -0.18 0.11 16 12 Si 1.06 -3.07 12.32 -169.99 -2.09 -5.17 16 13 C -0.45 0.84 8.65 101.05 0.87 1.71 16 14 C -0.45 0.92 8.53 101.05 0.86 1.79 16 15 C -0.45 0.93 8.53 101.05 0.86 1.79 16 16 C -0.09 0.03 9.29 -39.58 -0.37 -0.34 16 17 C -0.11 -0.02 9.70 -39.58 -0.38 -0.41 16 18 C -0.15 -0.11 10.46 -37.46 -0.39 -0.50 16 19 C -0.06 -0.04 6.20 -35.74 -0.22 -0.26 16 20 C -0.04 0.05 2.98 36.01 0.11 0.16 16 21 O -0.53 0.50 12.86 -35.23 -0.45 0.04 16 22 Si 0.96 -0.80 27.37 -169.99 -4.65 -5.46 16 23 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 24 H -0.24 0.03 7.11 56.52 0.40 0.43 16 25 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 26 O -0.17 -0.33 8.89 7.65 0.07 -0.26 16 27 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 28 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.11 0.17 6.49 -51.93 -0.34 -0.16 16 30 H 0.40 -0.24 7.64 -40.82 -0.31 -0.55 16 31 H 0.08 0.10 8.09 -51.93 -0.42 -0.32 16 32 H 0.08 0.10 8.09 -51.93 -0.42 -0.32 16 33 H 0.12 -0.09 8.06 -52.48 -0.42 -0.51 16 34 H 0.12 -0.25 7.43 -52.49 -0.39 -0.64 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 39 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 40 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 41 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 43 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 44 H 0.12 -0.25 7.43 -52.49 -0.39 -0.64 16 45 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 46 H 0.16 -0.18 7.74 -52.48 -0.41 -0.59 16 47 H 0.14 -0.37 7.96 -51.93 -0.41 -0.79 16 48 H 0.38 -1.48 8.70 45.56 0.40 -1.09 16 LS Contribution 406.58 15.07 6.13 6.13 Total: 0.00 -7.18 406.58 -8.97 -16.15 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: -6.87 Total: -10.91 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.82 Total: 3.70 kcal Atomic # 7 Polarization: -0.72 SS G_CDS: -0.35 Total: -1.07 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.31 Total: -3.38 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: -6.75 Total: -10.62 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -7.18 -8.97 -16.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_13308374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.638 kcal (2) G-P(sol) polarization free energy of solvation -7.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds