Wall clock time and date at job start Sat Mar 6 2021 16:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46504 * 109.46975 * 270.28241 * 9 8 7 11 11 C 1.34770 * 120.00048 * 180.02562 * 10 9 8 12 12 O 1.21610 * 120.00388 * 359.97438 * 11 10 9 13 13 C 1.47388 * 120.00095 * 179.97438 * 11 10 9 14 14 C 1.36415 * 127.18728 * 359.68382 * 13 11 10 15 15 O 1.33655 * 108.39111 * 179.89389 * 14 13 11 16 16 C 1.34216 * 110.91239 * 0.38594 * 15 14 13 17 17 C 1.50699 * 125.43953 * 179.76374 * 16 15 14 18 18 O 1.42902 * 109.46731 * 244.99934 * 17 16 15 19 19 Si 1.86294 * 109.47065 * 5.00068 * 17 16 15 20 20 H 1.48505 * 109.47453 * 60.00045 * 19 17 16 21 21 H 1.48501 * 109.47025 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47280 * 299.99861 * 19 17 16 23 23 C 1.34176 * 109.12115 * 359.76413 * 16 15 14 24 24 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 25 25 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 26 26 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 27 27 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 28 28 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 31 31 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 32 32 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 33 33 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 34 34 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 37 37 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 38 38 H 1.08997 * 109.47544 * 150.28201 * 9 8 7 39 39 H 0.97001 * 120.00263 * 359.97438 * 10 9 8 40 40 H 1.07997 * 125.80604 * 0.02562 * 14 13 11 41 41 H 1.09001 * 109.46926 * 125.00284 * 17 16 15 42 42 H 0.96697 * 113.99713 * 60.00348 * 18 17 16 43 43 H 1.08005 * 127.02320 * 180.02562 * 23 16 15 44 44 H 1.08001 * 120.00274 * 179.72697 * 24 8 7 45 45 H 1.07997 * 120.00460 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4066 -2.1839 3.7828 9 6 3.9089 -2.8942 5.0133 10 7 2.7694 -3.3552 5.8105 11 6 2.9789 -4.0204 6.9637 12 8 4.1137 -4.2385 7.3424 13 6 1.8325 -4.4836 7.7659 14 6 0.5081 -4.3154 7.4854 15 8 -0.2053 -4.8845 8.4619 16 6 0.5991 -5.4216 9.3923 17 6 0.1400 -6.1388 10.6357 18 8 0.5377 -5.3946 11.7890 19 14 -1.7157 -6.3001 10.6100 20 1 -2.1290 -7.0734 9.4115 21 1 -2.1682 -7.0063 11.8355 22 1 -2.3295 -4.9486 10.5630 23 6 1.8773 -5.2180 9.0387 24 6 3.1758 -0.8214 3.8172 25 6 2.7155 -0.1696 2.6883 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.5357 -2.7986 0.5826 36 1 3.3471 -3.9610 2.5960 37 1 4.5149 -3.7504 4.7167 38 1 4.5141 -2.2090 5.6069 39 1 1.8642 -3.1809 5.5086 40 1 0.1047 -3.8103 6.6203 41 1 0.5906 -7.1307 10.6702 42 1 0.1729 -4.4998 11.8246 43 1 2.7591 -5.5303 9.5786 44 1 3.3555 -0.2659 4.7258 45 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_13456056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:47:12 Heat of formation + Delta-G solvation = -71.386670 kcal Electronic energy + Delta-G solvation = -24890.127317 eV Core-core repulsion = 21190.573372 eV Total energy + Delta-G solvation = -3699.553946 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.76359 -40.85066 -39.81611 -37.99824 -36.09244 -34.09925 -32.55289 -31.85842 -31.51207 -29.41515 -28.28542 -28.25456 -27.50695 -26.47451 -24.47607 -23.44839 -22.35230 -22.08683 -21.01407 -19.45201 -18.07008 -17.65707 -17.53252 -17.33225 -16.75430 -16.61633 -16.22079 -15.82575 -15.74565 -15.55143 -14.96637 -14.61120 -14.32752 -14.19306 -14.06317 -13.98879 -13.92953 -13.81199 -13.62973 -13.62273 -13.46045 -13.11119 -13.10173 -12.95428 -12.84649 -12.66021 -12.18361 -12.04834 -11.91949 -11.43008 -10.99958 -10.89390 -10.75686 -10.74844 -10.60648 -10.31072 -9.82546 -9.78889 -9.65880 0.18926 0.20435 0.53492 0.79860 1.06254 1.44055 1.50075 1.76946 1.85901 1.92356 1.97655 2.03229 2.19201 2.21462 2.68000 2.97552 3.30438 3.46813 3.58017 3.65489 3.90481 3.94875 4.16309 4.31525 4.34056 4.45232 4.50487 4.56020 4.62832 4.75538 4.85105 4.85683 4.86124 4.89975 4.90304 4.90433 4.91912 5.01494 5.11324 5.18847 5.20552 5.41791 5.59650 5.60678 5.63240 5.69553 5.72083 5.79657 6.13530 6.38208 6.56021 7.05184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.130 2.870 3 C -0.465 4.465 4 C -0.466 4.466 5 C -0.371 4.371 6 C -0.100 4.100 7 C -0.121 4.121 8 C -0.106 4.106 9 C 0.165 3.835 10 N -0.706 5.706 11 C 0.587 3.413 12 O -0.584 6.584 13 C -0.266 4.266 14 C 0.062 3.938 15 O -0.172 6.172 16 C -0.055 4.055 17 C -0.043 4.043 18 O -0.543 6.543 19 Si 1.002 2.998 20 H -0.260 1.260 21 H -0.259 1.259 22 H -0.255 1.255 23 C -0.146 4.146 24 C -0.121 4.121 25 C -0.100 4.100 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.414 0.586 40 H 0.257 0.743 41 H 0.147 0.853 42 H 0.394 0.606 43 H 0.150 0.850 44 H 0.126 0.874 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 2.659 -4.495 8.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.317 2.683 3 C -0.572 4.572 4 C -0.572 4.572 5 C -0.411 4.411 6 C -0.117 4.117 7 C -0.140 4.140 8 C -0.107 4.107 9 C 0.042 3.958 10 N -0.358 5.358 11 C 0.376 3.624 12 O -0.465 6.465 13 C -0.271 4.271 14 C -0.009 4.009 15 O -0.068 6.068 16 C -0.104 4.104 17 C -0.153 4.153 18 O -0.350 6.350 19 Si 0.824 3.176 20 H -0.184 1.184 21 H -0.183 1.183 22 H -0.179 1.179 23 C -0.166 4.166 24 C -0.140 4.140 25 C -0.117 4.117 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.251 0.749 40 H 0.273 0.727 41 H 0.164 0.836 42 H 0.244 0.756 43 H 0.168 0.832 44 H 0.144 0.856 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.114 1.835 -4.010 7.538 hybrid contribution 0.657 0.490 -0.097 0.825 sum -5.457 2.325 -4.108 7.215 Atomic orbital electron populations 1.26271 1.21427 1.04544 1.04575 0.77104 0.65232 0.64331 0.61631 1.26323 1.06351 1.19730 1.04813 1.26324 1.06353 1.08567 1.15982 1.27951 1.02551 0.99597 1.11015 1.21375 0.97118 0.95100 0.98142 1.21346 0.99367 1.00229 0.93060 1.19750 1.02034 0.94351 0.94548 1.20151 0.88061 0.98220 0.89379 1.45756 1.10906 1.57221 1.21943 1.17525 0.87522 0.76956 0.80435 1.90793 1.25373 1.58686 1.71686 1.21469 0.93931 1.11574 1.00122 1.25213 0.88534 0.94728 0.92381 1.83723 1.38180 1.56468 1.28452 1.22952 0.88864 1.04001 0.94542 1.24610 1.14650 0.96821 0.79174 1.86559 1.76426 1.32032 1.40026 0.84884 0.71264 0.81233 0.80261 1.18392 1.18272 1.17882 1.22583 0.97666 1.01146 0.95205 1.21348 0.99351 0.93870 0.99429 1.21374 0.97098 1.00678 0.92578 0.91231 0.90883 0.91240 0.91455 0.90840 0.90873 0.90879 0.90839 0.91454 0.84450 0.85622 0.91249 0.91246 0.74901 0.72701 0.83558 0.75640 0.83234 0.85613 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.70 8.65 113.37 0.98 3.69 16 2 Si 1.13 -8.71 12.32 68.60 0.85 -7.87 16 3 C -0.47 2.59 8.53 113.37 0.97 3.56 16 4 C -0.47 2.59 8.53 113.37 0.97 3.55 16 5 C -0.37 1.33 4.59 22.27 0.10 1.43 16 6 C -0.10 0.25 9.29 22.27 0.21 0.46 16 7 C -0.12 0.12 9.70 22.27 0.22 0.34 16 8 C -0.11 0.03 5.25 -19.87 -0.10 -0.07 16 9 C 0.16 0.32 5.80 85.63 0.50 0.82 16 10 N -0.71 -0.34 5.54 -470.14 -2.60 -2.94 16 11 C 0.59 4.44 7.81 86.65 0.68 5.12 16 12 O -0.58 -10.12 16.98 -4.06 -0.07 -10.19 16 13 C -0.27 -1.02 6.31 -18.99 -0.12 -1.14 16 14 C 0.06 -0.22 11.61 67.39 0.78 0.56 16 15 O -0.17 0.10 8.90 4.43 0.04 0.14 16 16 C -0.06 -0.08 6.18 24.76 0.15 0.08 16 17 C -0.04 0.08 2.97 71.24 0.21 0.29 16 18 O -0.54 0.20 12.88 -148.98 -1.92 -1.71 16 19 Si 1.00 -2.68 27.38 68.60 1.88 -0.80 16 20 H -0.26 0.17 7.11 99.48 0.71 0.88 16 21 H -0.26 0.14 7.11 99.48 0.71 0.84 16 22 H -0.26 0.43 7.11 99.48 0.71 1.14 16 23 C -0.15 -0.83 10.90 23.65 0.26 -0.57 16 24 C -0.12 0.12 9.70 22.27 0.22 0.34 16 25 C -0.10 0.25 9.29 22.27 0.21 0.46 16 26 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 27 H 0.07 -0.43 7.96 -2.38 -0.02 -0.45 16 28 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 31 H 0.07 -0.45 7.69 -2.38 -0.02 -0.46 16 32 H 0.07 -0.44 7.69 -2.38 -0.02 -0.46 16 33 H 0.07 -0.41 7.96 -2.39 -0.02 -0.42 16 34 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 35 H 0.14 -0.85 7.43 -2.91 -0.02 -0.87 16 36 H 0.13 -0.32 8.06 -2.91 -0.02 -0.35 16 37 H 0.07 0.27 8.09 -2.38 -0.02 0.25 16 38 H 0.07 0.27 8.09 -2.39 -0.02 0.25 16 39 H 0.41 -2.49 7.43 -92.71 -0.69 -3.18 16 40 H 0.26 -3.57 7.47 -2.91 -0.02 -3.59 16 41 H 0.15 -0.63 7.96 -2.39 -0.02 -0.65 16 42 H 0.39 -2.75 8.70 -74.06 -0.64 -3.39 16 43 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 44 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 45 H 0.14 -0.85 7.43 -2.91 -0.02 -0.87 16 Total: 0.00 -21.69 388.34 4.81 -16.88 By element: Atomic # 1 Polarization: -12.84 SS G_CDS: 0.42 Total: -12.42 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.22 Total: 18.91 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -2.60 Total: -2.94 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.95 Total: -11.77 kcal Atomic # 14 Polarization: -11.39 SS G_CDS: 2.72 Total: -8.67 kcal Total: -21.69 4.81 -16.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_13456056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.506 kcal (2) G-P(sol) polarization free energy of solvation -21.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds