Wall clock time and date at job start Sat Mar 6 2021 16:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86299 * 109.46898 * 2 1 4 4 C 1.86289 * 109.47392 * 239.99952 * 2 1 3 5 5 C 1.86800 * 109.46994 * 119.99501 * 2 1 3 6 6 C 1.38233 * 119.99552 * 90.00274 * 5 2 1 7 7 C 1.38240 * 119.99760 * 180.02562 * 6 5 2 8 8 C 1.38237 * 120.00086 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.00179 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.47141 * 90.00188 * 9 8 7 11 11 C 1.34776 * 120.00005 * 179.97438 * 10 9 8 12 12 O 1.21630 * 120.00206 * 0.02562 * 11 10 9 13 13 C 1.47267 * 119.99820 * 180.02562 * 11 10 9 14 14 C 1.36331 * 126.96735 * 180.02562 * 13 11 10 15 15 C 1.50995 * 126.79394 * 359.97438 * 14 13 11 16 16 C 1.53397 * 108.25092 * 164.35057 * 15 14 13 17 17 C 1.53154 * 109.04855 * 48.46591 * 16 15 14 18 18 C 1.53147 * 109.51124 * 290.41555 * 17 16 15 19 19 N 1.35213 * 108.65780 * 180.02562 * 14 13 11 20 20 C 1.36420 * 109.90188 * 359.96516 * 19 14 13 21 21 C 1.50702 * 125.49523 * 180.02562 * 20 19 14 22 22 O 1.42900 * 109.46896 * 330.00145 * 21 20 19 23 23 Si 1.86299 * 109.47216 * 209.99936 * 21 20 19 24 24 H 1.48508 * 109.46837 * 60.00243 * 23 21 20 25 25 H 1.48503 * 109.47054 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47202 * 300.00476 * 23 21 20 27 27 C 1.34502 * 109.01233 * 0.02562 * 20 19 14 28 28 C 1.38234 * 119.99607 * 0.26128 * 8 7 6 29 29 C 1.38230 * 120.00203 * 270.02766 * 5 2 1 30 30 H 1.08996 * 109.47064 * 300.00129 * 1 2 3 31 31 H 1.09003 * 109.46787 * 60.00641 * 1 2 3 32 32 H 1.08996 * 109.46725 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47367 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47045 * 300.00060 * 3 2 1 35 35 H 1.08998 * 109.47439 * 59.99517 * 3 2 1 36 36 H 1.09006 * 109.47388 * 300.00001 * 4 2 1 37 37 H 1.09003 * 109.47638 * 59.99928 * 4 2 1 38 38 H 1.08997 * 109.47255 * 180.02562 * 4 2 1 39 39 H 1.07998 * 120.00665 * 359.97438 * 6 5 2 40 40 H 1.07996 * 119.99989 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.47442 * 330.00765 * 9 8 7 42 42 H 1.09003 * 109.47562 * 210.00261 * 9 8 7 43 43 H 0.96996 * 119.99824 * 0.02562 * 10 9 8 44 44 H 1.09003 * 109.70621 * 44.66548 * 15 14 13 45 45 H 1.09000 * 109.71285 * 284.04447 * 15 14 13 46 46 H 1.09006 * 109.53968 * 168.33359 * 16 15 14 47 47 H 1.08997 * 109.54371 * 288.58969 * 16 15 14 48 48 H 1.09005 * 109.45940 * 50.43997 * 17 16 15 49 49 H 1.08993 * 109.46636 * 170.40688 * 17 16 15 50 50 H 1.09000 * 109.59749 * 291.18122 * 18 17 16 51 51 H 1.08997 * 109.63272 * 170.89150 * 18 17 16 52 52 H 1.08998 * 109.46846 * 89.99924 * 21 20 19 53 53 H 0.96693 * 113.99860 * 299.99766 * 22 21 20 54 54 H 1.07998 * 126.81456 * 179.97438 * 27 20 19 55 55 H 1.08000 * 119.99830 * 179.72086 * 28 8 7 56 56 H 1.08002 * 119.99976 * 359.97438 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5210 5 6 2.4857 -0.8805 1.5253 6 6 2.7161 -2.2430 1.4911 7 6 3.1764 -2.8947 2.6200 8 6 3.4067 -2.1837 3.7829 9 6 3.9079 -2.8942 5.0137 10 7 5.3730 -2.8953 5.0145 11 6 6.0459 -3.4787 6.0260 12 8 5.4370 -4.0048 6.9380 13 6 7.5186 -3.4792 6.0270 14 6 8.3376 -4.0242 6.9709 15 6 7.9142 -4.7484 8.2263 16 6 9.1259 -5.5162 8.7698 17 6 10.3351 -4.5772 8.8111 18 6 10.7857 -4.2602 7.3822 19 7 9.6216 -3.8117 6.6042 20 6 9.6605 -3.1302 5.4230 21 6 10.9120 -2.7104 4.6959 22 8 11.9575 -2.4785 5.6420 23 14 10.5801 -1.1456 3.7410 24 1 10.1689 -0.0708 4.6796 25 1 11.8135 -0.7316 3.0249 26 1 9.4935 -1.3866 2.7579 27 6 8.4019 -2.8933 5.0121 28 6 3.1716 -0.8220 3.8184 29 6 2.7155 -0.1696 2.6883 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 3.5740 1.7566 0.0005 34 1 2.1206 2.2703 -0.8900 35 1 2.1206 2.2704 0.8899 36 1 2.1208 -1.9059 -1.5211 37 1 2.1208 -0.3644 -2.4111 38 1 3.5741 -0.8786 -1.5208 39 1 2.5358 -2.7986 0.5827 40 1 3.3560 -3.9593 2.5934 41 1 3.5439 -3.9217 5.0137 42 1 3.5445 -2.3800 5.9035 43 1 5.8586 -2.4754 4.2873 44 1 7.1104 -5.4471 7.9942 45 1 7.5724 -4.0276 8.9691 46 1 8.9087 -5.8754 9.7758 47 1 9.3435 -6.3625 8.1183 48 1 10.0599 -3.6528 9.3189 49 1 11.1507 -5.0587 9.3506 50 1 11.2079 -5.1551 6.9250 51 1 11.5372 -3.4710 7.4017 52 1 11.2138 -3.4994 4.0070 53 1 11.7573 -1.7872 6.2878 54 1 8.1012 -2.3746 4.1139 55 1 3.3473 -0.2673 4.7283 56 1 2.5355 0.8950 2.7150 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_16915396.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:48:17 Heat of formation + Delta-G solvation = -48.779957 kcal Electronic energy + Delta-G solvation = -33210.569729 eV Core-core repulsion = 29014.875748 eV Total energy + Delta-G solvation = -4195.693981 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 386.194 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.82219 -40.64946 -39.70847 -37.97643 -36.88499 -35.91779 -33.53608 -32.29344 -31.85627 -31.18595 -29.64845 -29.33711 -28.28024 -28.26384 -27.19735 -26.26379 -24.67238 -23.71145 -23.44366 -22.07737 -21.76393 -21.13052 -19.69091 -18.98749 -17.68361 -17.39628 -16.94339 -16.76081 -16.53065 -16.37681 -16.09974 -15.73512 -15.61976 -15.48177 -15.32328 -15.08822 -14.70032 -14.65337 -14.53506 -14.31830 -14.14531 -14.03277 -14.00941 -13.88380 -13.76841 -13.54478 -13.43527 -13.28298 -13.12884 -13.09999 -12.95657 -12.77136 -12.63165 -12.41555 -12.14390 -12.02176 -11.97314 -11.91361 -11.78506 -11.72305 -11.10785 -10.86478 -10.75176 -10.74571 -10.66522 -10.21459 -9.78944 -9.64262 -9.60121 -9.08731 0.21037 0.53681 0.67130 0.94844 1.32530 1.51624 1.55625 1.78785 1.85816 1.98252 2.04313 2.08615 2.43629 2.48174 2.67960 3.01459 3.30539 3.46689 3.58069 3.66408 3.70361 3.80340 3.82174 3.92023 4.12137 4.17294 4.33312 4.34898 4.36267 4.40577 4.53570 4.55603 4.60818 4.61876 4.74619 4.76087 4.79520 4.83302 4.85289 4.85351 4.89631 4.90901 4.90950 4.91682 4.96310 5.00468 5.02602 5.13493 5.19013 5.22055 5.37856 5.42463 5.59715 5.60158 5.64505 5.66386 5.68539 5.72497 5.99397 6.14289 6.20290 6.52027 6.57364 7.25943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.374 4.374 6 C -0.099 4.099 7 C -0.123 4.123 8 C -0.106 4.106 9 C 0.167 3.833 10 N -0.714 5.714 11 C 0.588 3.412 12 O -0.587 6.587 13 C -0.258 4.258 14 C 0.107 3.893 15 C -0.053 4.053 16 C -0.125 4.125 17 C -0.134 4.134 18 C 0.094 3.906 19 N -0.423 5.423 20 C -0.010 4.010 21 C -0.051 4.051 22 O -0.547 6.547 23 Si 1.004 2.996 24 H -0.262 1.262 25 H -0.265 1.265 26 H -0.250 1.250 27 C -0.180 4.180 28 C -0.123 4.123 29 C -0.099 4.099 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.409 0.591 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.086 0.914 51 H 0.121 0.879 52 H 0.131 0.869 53 H 0.389 0.611 54 H 0.161 0.839 55 H 0.124 0.876 56 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 2.528 -2.780 5.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.413 4.413 6 C -0.117 4.117 7 C -0.142 4.142 8 C -0.107 4.107 9 C 0.044 3.956 10 N -0.365 5.365 11 C 0.379 3.621 12 O -0.470 6.470 13 C -0.268 4.268 14 C -0.011 4.011 15 C -0.091 4.091 16 C -0.162 4.162 17 C -0.171 4.171 18 C -0.025 4.025 19 N -0.099 5.099 20 C -0.119 4.119 21 C -0.161 4.161 22 O -0.354 6.354 23 Si 0.825 3.175 24 H -0.186 1.186 25 H -0.189 1.189 26 H -0.173 1.173 27 C -0.204 4.204 28 C -0.142 4.142 29 C -0.117 4.117 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.245 0.755 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.127 0.873 50 H 0.104 0.896 51 H 0.139 0.861 52 H 0.149 0.851 53 H 0.239 0.761 54 H 0.179 0.821 55 H 0.142 0.858 56 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.619 2.309 -2.705 5.073 hybrid contribution -0.305 -0.144 0.515 0.616 sum 3.314 2.165 -2.189 4.524 Atomic orbital electron populations 1.26320 1.21919 1.04388 1.04500 0.77137 0.64971 0.64652 0.61698 1.26274 1.06476 1.19335 1.04823 1.26278 1.06478 1.08444 1.15728 1.28001 1.02604 0.99577 1.11144 1.21374 0.97076 0.95143 0.98127 1.21341 0.99584 1.00213 0.93044 1.19810 1.01699 0.94447 0.94700 1.20098 0.79712 1.00099 0.95692 1.45752 1.06659 1.58759 1.25301 1.17613 0.86543 0.76886 0.81099 1.90736 1.70666 1.47888 1.37665 1.19920 0.91501 1.14602 1.00753 1.20557 0.83523 0.99665 0.97397 1.20446 0.98647 0.98482 0.91549 1.21708 0.93761 0.98027 1.02750 1.21938 0.99395 1.00894 0.94896 1.22538 0.86054 1.02659 0.91292 1.44059 1.05851 1.41950 1.18036 1.21011 0.97035 1.03517 0.90364 1.24846 0.84293 1.11389 0.95580 1.86471 1.40902 1.61586 1.46439 0.84941 0.79724 0.74177 0.78658 1.18621 1.18930 1.17334 1.21956 0.90800 1.06818 1.00828 1.21342 0.99595 0.93806 0.99442 1.21374 0.97096 1.00697 0.92558 0.91484 0.90734 0.91497 0.91174 0.90720 0.90970 0.90983 0.90721 0.91179 0.84391 0.85807 0.91502 0.91450 0.75520 0.90283 0.90015 0.89215 0.91573 0.90845 0.87259 0.89571 0.86093 0.85148 0.76149 0.82136 0.85763 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.59 8.65 113.37 0.98 2.57 16 2 Si 1.13 -6.87 12.32 68.60 0.85 -6.02 16 3 C -0.46 2.21 8.53 113.37 0.97 3.18 16 4 C -0.46 2.18 8.53 113.37 0.97 3.15 16 5 C -0.37 0.45 4.59 22.27 0.10 0.55 16 6 C -0.10 -0.01 9.29 22.27 0.21 0.19 16 7 C -0.12 -0.29 9.70 22.27 0.22 -0.07 16 8 C -0.11 -0.35 5.25 -19.87 -0.10 -0.46 16 9 C 0.17 0.94 5.80 85.63 0.50 1.44 16 10 N -0.71 -4.31 5.54 -470.24 -2.61 -6.92 16 11 C 0.59 6.71 7.81 86.62 0.68 7.39 16 12 O -0.59 -10.47 15.34 -4.13 -0.06 -10.54 16 13 C -0.26 -2.19 6.28 -19.12 -0.12 -2.31 16 14 C 0.11 0.73 6.57 41.69 0.27 1.00 16 15 C -0.05 -0.27 5.32 30.07 0.16 -0.11 16 16 C -0.12 0.14 5.98 30.78 0.18 0.33 16 17 C -0.13 0.61 5.92 30.69 0.18 0.79 16 18 C 0.09 -0.30 6.22 86.33 0.54 0.23 16 19 N -0.42 -0.93 3.11 -493.58 -1.54 -2.46 16 20 C -0.01 -0.01 6.15 40.99 0.25 0.24 16 21 C -0.05 0.17 3.00 71.24 0.21 0.39 16 22 O -0.55 2.32 10.28 -148.98 -1.53 0.79 16 23 Si 1.00 -3.34 26.55 68.60 1.82 -1.52 16 24 H -0.26 0.32 7.11 99.48 0.71 1.03 16 25 H -0.26 0.24 7.11 99.48 0.71 0.94 16 26 H -0.25 0.73 6.80 99.48 0.68 1.41 16 27 C -0.18 -0.62 9.09 23.64 0.21 -0.40 16 28 C -0.12 -0.28 9.70 22.27 0.22 -0.06 16 29 C -0.10 0.00 9.29 22.27 0.21 0.20 16 30 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 31 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 33 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 34 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 35 H 0.07 -0.36 7.69 -2.39 -0.02 -0.38 16 36 H 0.07 -0.35 7.69 -2.38 -0.02 -0.37 16 37 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 38 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.14 -0.53 7.43 -2.91 -0.02 -0.55 16 40 H 0.12 0.11 8.06 -2.91 -0.02 0.08 16 41 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 42 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 43 H 0.41 0.92 7.59 -92.71 -0.70 0.22 16 44 H 0.08 0.72 7.40 -2.39 -0.02 0.70 16 45 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.09 -0.29 8.14 -2.38 -0.02 -0.31 16 47 H 0.07 -0.03 8.12 -2.39 -0.02 -0.05 16 48 H 0.07 -0.28 8.11 -2.38 -0.02 -0.29 16 49 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 50 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 51 H 0.12 -0.75 5.67 -2.39 -0.01 -0.76 16 52 H 0.13 -0.66 7.96 -2.39 -0.02 -0.68 16 53 H 0.39 -3.71 8.27 -74.06 -0.61 -4.32 16 54 H 0.16 -0.12 6.32 -2.91 -0.02 -0.13 16 55 H 0.12 0.08 8.06 -2.91 -0.02 0.06 16 56 H 0.14 -0.55 7.43 -2.91 -0.02 -0.57 16 Total: 0.00 -18.44 446.10 4.05 -14.39 By element: Atomic # 1 Polarization: -6.25 SS G_CDS: 0.29 Total: -5.96 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.83 Total: 18.23 kcal Atomic # 7 Polarization: -5.24 SS G_CDS: -4.14 Total: -9.38 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.59 Total: -9.75 kcal Atomic # 14 Polarization: -10.21 SS G_CDS: 2.67 Total: -7.54 kcal Total: -18.44 4.05 -14.39 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_16915396.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.388 kcal (2) G-P(sol) polarization free energy of solvation -18.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds