Wall clock time and date at job start Sat Mar 6 2021 16:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47001 * 2 1 4 4 C 1.86299 * 109.46874 * 240.00203 * 2 1 3 5 5 C 1.86799 * 109.47028 * 120.00401 * 2 1 3 6 6 C 1.38234 * 120.00228 * 90.00161 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 N 1.46500 * 109.47298 * 89.99945 * 9 8 7 11 11 C 1.34770 * 119.99686 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00567 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99863 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47207 * 179.97438 * 13 11 10 15 15 C 1.35905 * 116.99833 * 180.02562 * 14 13 11 16 16 C 1.38706 * 120.05977 * 0.02562 * 15 14 13 17 17 C 1.38166 * 119.94814 * 180.02562 * 16 15 14 18 18 C 1.38239 * 120.05109 * 359.97438 * 17 16 15 19 19 C 1.38287 * 120.11390 * 0.02886 * 18 17 16 20 20 C 1.38122 * 120.05851 * 359.67782 * 19 18 17 21 21 C 1.50695 * 120.03182 * 180.32429 * 20 19 18 22 22 O 1.42903 * 109.47347 * 105.26667 * 21 20 19 23 23 Si 1.86302 * 109.46979 * 345.27029 * 21 20 19 24 24 H 1.48504 * 109.47116 * 60.00206 * 23 21 20 25 25 H 1.48501 * 109.46967 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47243 * 300.00123 * 23 21 20 27 27 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 28 28 C 1.38235 * 119.99567 * 270.01874 * 5 2 1 29 29 H 1.09001 * 109.47205 * 299.99925 * 1 2 3 30 30 H 1.08999 * 109.47227 * 59.99973 * 1 2 3 31 31 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46574 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47152 * 300.00073 * 3 2 1 34 34 H 1.09000 * 109.46711 * 60.00392 * 3 2 1 35 35 H 1.09007 * 109.47223 * 300.00044 * 4 2 1 36 36 H 1.08999 * 109.47337 * 59.99891 * 4 2 1 37 37 H 1.09000 * 109.47073 * 180.02562 * 4 2 1 38 38 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 39 39 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 41 41 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 42 42 H 0.96993 * 119.99824 * 0.02562 * 10 9 8 43 43 H 1.08994 * 109.47437 * 299.99933 * 13 11 10 44 44 H 1.09001 * 109.46970 * 60.00315 * 13 11 10 45 45 H 1.08004 * 120.02403 * 359.97405 * 16 15 14 46 46 H 1.07997 * 119.97455 * 179.97438 * 17 16 15 47 47 H 1.08003 * 119.94260 * 180.02562 * 18 17 16 48 48 H 1.08001 * 119.96693 * 179.97438 * 19 18 17 49 49 H 1.08994 * 109.47325 * 225.27026 * 21 20 19 50 50 H 0.96694 * 114.00300 * 300.00328 * 22 21 20 51 51 H 1.08001 * 120.00279 * 180.02562 * 27 8 7 52 52 H 1.07997 * 120.00423 * 359.97438 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7161 -2.2433 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9021 -2.8958 5.0152 10 7 5.3671 -2.9027 5.0195 11 6 6.0352 -3.4889 6.0325 12 8 5.4237 -4.0104 6.9409 13 6 7.5422 -3.4965 6.0367 14 8 8.0119 -4.1713 7.2055 15 6 9.3583 -4.2664 7.3638 16 6 10.2098 -3.7213 6.4141 17 6 11.5782 -3.8198 6.5771 18 6 12.0990 -4.4606 7.6857 19 6 11.2523 -5.0050 8.6339 20 6 9.8836 -4.9039 8.4787 21 6 8.9615 -5.4910 9.5161 22 8 8.3994 -4.4394 10.3036 23 14 9.9217 -6.6465 10.6177 24 1 11.0115 -5.8961 11.2920 25 1 9.0132 -7.2245 11.6403 26 1 10.5060 -7.7393 9.7994 27 6 3.1773 -0.8214 3.8166 28 6 2.7157 -0.1698 2.6882 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2702 0.8900 35 1 2.1206 -1.9059 -1.5212 36 1 2.1206 -0.3644 -2.4111 37 1 3.5740 -0.8786 -1.5210 38 1 2.5358 -2.7987 0.5824 39 1 3.3560 -3.9596 2.5931 40 1 3.5386 -2.3794 5.9037 41 1 3.5339 -3.9217 5.0151 42 1 5.8561 -2.4853 4.2933 43 1 7.9054 -4.0128 5.1482 44 1 7.9107 -2.4707 6.0371 45 1 9.8033 -3.2209 5.5476 46 1 12.2416 -3.3959 5.8377 47 1 13.1690 -4.5363 7.8116 48 1 11.6618 -5.5055 9.4990 49 1 8.1616 -6.0417 9.0212 50 1 9.0551 -3.9064 10.7737 51 1 3.3576 -0.2659 4.7251 52 1 2.5358 0.8947 2.7150 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10854838_2989392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:48:35 Heat of formation + Delta-G solvation = -96.193792 kcal Electronic energy + Delta-G solvation = -30071.760749 eV Core-core repulsion = 25931.829707 eV Total energy + Delta-G solvation = -4139.931042 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 373.167 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.57679 -40.73750 -39.90062 -38.43411 -37.36006 -35.94798 -32.83004 -32.50138 -31.96356 -31.24148 -29.75758 -29.40852 -28.51361 -28.46871 -26.65365 -26.55442 -23.57694 -23.54892 -22.59077 -22.14963 -21.57128 -19.48433 -18.65924 -17.96455 -17.49775 -17.41656 -16.96806 -16.92875 -16.47166 -16.30079 -15.94354 -15.83811 -15.63030 -15.25286 -15.05591 -14.76337 -14.51415 -14.44981 -14.32098 -14.21161 -14.08936 -13.96087 -13.80036 -13.71083 -13.57918 -13.34366 -13.31266 -13.28092 -13.16476 -13.01223 -12.76305 -12.54140 -12.19324 -12.03702 -12.01677 -11.82449 -11.53778 -11.15668 -10.97419 -10.93624 -10.85836 -10.21959 -10.19582 -9.99828 -9.87241 -9.73995 -9.20364 0.09678 0.20634 0.40402 0.45196 1.24670 1.47104 1.52621 1.54200 1.59820 1.63495 1.78043 1.89206 1.99517 2.47535 2.58545 2.67999 2.92087 3.49999 3.59835 3.65861 3.78812 3.79952 3.83144 3.88751 3.93211 4.02330 4.04857 4.26380 4.32557 4.33048 4.42936 4.51095 4.62091 4.63881 4.64615 4.65225 4.68755 4.70530 4.71413 4.71654 4.72003 4.93647 4.98751 5.08133 5.24471 5.26336 5.30928 5.32213 5.39310 5.43272 5.47331 5.48654 5.54680 5.56258 5.68156 6.02940 6.25415 6.40731 6.75746 7.12792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.362 4.362 6 C -0.090 4.090 7 C -0.111 4.111 8 C -0.103 4.103 9 C 0.163 3.837 10 N -0.724 5.724 11 C 0.515 3.485 12 O -0.507 6.507 13 C 0.040 3.960 14 O -0.276 6.276 15 C 0.154 3.846 16 C -0.212 4.212 17 C -0.073 4.073 18 C -0.151 4.151 19 C -0.089 4.089 20 C -0.148 4.148 21 C -0.071 4.071 22 O -0.530 6.530 23 Si 0.950 3.050 24 H -0.252 1.252 25 H -0.252 1.252 26 H -0.250 1.250 27 C -0.111 4.111 28 C -0.090 4.090 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.403 0.597 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.118 0.882 50 H 0.370 0.630 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 3.113 -5.753 7.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.404 4.404 6 C -0.108 4.108 7 C -0.130 4.130 8 C -0.103 4.103 9 C 0.040 3.960 10 N -0.379 5.379 11 C 0.299 3.701 12 O -0.381 6.381 13 C -0.039 4.039 14 O -0.188 6.188 15 C 0.108 3.892 16 C -0.231 4.231 17 C -0.091 4.091 18 C -0.169 4.169 19 C -0.106 4.106 20 C -0.149 4.149 21 C -0.181 4.181 22 O -0.334 6.334 23 Si 0.772 3.228 24 H -0.177 1.177 25 H -0.176 1.176 26 H -0.173 1.173 27 C -0.130 4.130 28 C -0.108 4.108 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.237 0.763 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.135 0.865 50 H 0.216 0.784 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.797 1.787 -4.568 5.224 hybrid contribution 0.704 0.828 -0.673 1.278 sum 2.500 2.615 -5.241 6.368 Atomic orbital electron populations 1.26132 1.20454 1.04619 1.04539 0.78182 0.66906 0.66097 0.63683 1.26138 1.06419 1.18577 1.04622 1.26140 1.06417 1.08075 1.15123 1.27465 1.03124 0.99541 1.10244 1.21098 0.97255 0.94639 0.97816 1.21190 0.99212 0.99839 0.92746 1.19838 1.01478 0.94192 0.94824 1.20237 0.79011 1.00976 0.95763 1.45878 1.07181 1.59542 1.25312 1.20021 0.88793 0.78905 0.82369 1.90810 1.69304 1.43020 1.34920 1.22460 0.92926 0.99182 0.89356 1.86240 1.18792 1.72506 1.41240 1.18768 0.82001 0.94719 0.93705 1.21302 0.94561 1.06410 1.00795 1.21015 0.94317 0.96547 0.97189 1.21047 1.00100 1.00694 0.95058 1.21010 0.91831 0.98499 0.99297 1.19677 0.94094 1.04367 0.96809 1.24857 1.02001 0.96056 0.95232 1.86619 1.36113 1.46618 1.64033 0.85752 0.78580 0.78826 0.79608 1.17656 1.17607 1.17299 1.21198 0.99172 0.93783 0.98820 1.21104 0.97235 0.99801 0.92660 0.91151 0.91003 0.91153 0.91082 0.90911 0.91161 0.91165 0.90912 0.91083 0.85952 0.86089 0.90264 0.90283 0.76283 0.88869 0.88831 0.85232 0.85352 0.85353 0.85215 0.86456 0.78377 0.86070 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.89 8.65 101.05 0.87 1.76 16 2 Si 1.06 -3.50 12.32 -169.99 -2.09 -5.59 16 3 C -0.45 1.14 8.53 101.05 0.86 2.00 16 4 C -0.45 1.15 8.53 101.05 0.86 2.01 16 5 C -0.36 0.48 4.59 -39.58 -0.18 0.30 16 6 C -0.09 0.08 9.29 -39.59 -0.37 -0.28 16 7 C -0.11 0.06 9.70 -39.59 -0.38 -0.33 16 8 C -0.10 0.04 5.25 -104.62 -0.55 -0.51 16 9 C 0.16 0.03 5.80 -5.19 -0.03 0.00 16 10 N -0.72 0.46 5.55 -61.47 -0.34 0.12 16 11 C 0.51 1.15 7.91 -10.99 -0.09 1.06 16 12 O -0.51 -3.71 16.50 -14.35 -0.24 -3.95 16 13 C 0.04 0.00 5.22 36.01 0.19 0.18 16 14 O -0.28 -1.01 9.00 -39.35 -0.35 -1.37 16 15 C 0.15 0.38 6.66 -39.22 -0.26 0.12 16 16 C -0.21 -0.05 9.04 -39.44 -0.36 -0.41 16 17 C -0.07 0.02 10.04 -39.61 -0.40 -0.37 16 18 C -0.15 0.00 10.04 -39.56 -0.40 -0.39 16 19 C -0.09 -0.07 8.66 -39.61 -0.34 -0.41 16 20 C -0.15 -0.33 5.27 -104.47 -0.55 -0.88 16 21 C -0.07 -0.17 2.38 36.00 0.09 -0.08 16 22 O -0.53 -1.79 12.88 -35.23 -0.45 -2.24 16 23 Si 0.95 0.81 25.48 -169.99 -4.33 -3.52 16 24 H -0.25 -0.04 6.74 56.52 0.38 0.34 16 25 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 26 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 27 C -0.11 0.05 9.70 -39.58 -0.38 -0.33 16 28 C -0.09 0.08 9.29 -39.58 -0.37 -0.29 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 34 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 35 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 38 H 0.12 -0.31 7.43 -52.49 -0.39 -0.70 16 39 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 40 H 0.08 0.08 8.08 -51.93 -0.42 -0.34 16 41 H 0.08 0.07 8.09 -51.93 -0.42 -0.35 16 42 H 0.40 -1.31 8.46 -40.82 -0.35 -1.65 16 43 H 0.09 -0.26 7.66 -51.93 -0.40 -0.65 16 44 H 0.09 -0.23 7.66 -51.93 -0.40 -0.63 16 45 H 0.13 -0.30 6.30 -52.48 -0.33 -0.63 16 46 H 0.13 -0.32 8.06 -52.49 -0.42 -0.75 16 47 H 0.13 -0.25 8.06 -52.48 -0.42 -0.67 16 48 H 0.13 -0.08 4.89 -52.49 -0.26 -0.34 16 49 H 0.12 0.38 7.83 -51.93 -0.41 -0.03 16 50 H 0.37 -0.19 8.70 45.56 0.40 0.21 16 51 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 52 H 0.12 -0.31 7.43 -52.49 -0.39 -0.70 16 LS Contribution 433.12 15.07 6.53 6.53 Total: 0.00 -9.60 433.12 -10.63 -20.23 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: -7.56 Total: -13.35 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.79 Total: 3.14 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -0.34 Total: 0.12 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -1.04 Total: -7.56 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: -6.43 Total: -9.11 kcal Total LS contribution 6.53 Total: 6.53 kcal Total: -9.60 -10.63 -20.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_2989392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.961 kcal (2) G-P(sol) polarization free energy of solvation -9.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds