Wall clock time and date at job start Sat Mar 6 2021 16:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47001 * 2 1 4 4 C 1.86299 * 109.46874 * 240.00203 * 2 1 3 5 5 C 1.86799 * 109.47028 * 120.00401 * 2 1 3 6 6 C 1.38234 * 120.00228 * 90.00161 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 N 1.46500 * 109.47298 * 89.99945 * 9 8 7 11 11 C 1.34770 * 119.99686 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00567 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99863 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47207 * 179.97438 * 13 11 10 15 15 C 1.35905 * 116.99833 * 180.02562 * 14 13 11 16 16 C 1.38724 * 120.05747 * 359.72741 * 15 14 13 17 17 C 1.38141 * 119.94607 * 179.74305 * 16 15 14 18 18 C 1.38278 * 120.05256 * 0.50609 * 17 16 15 19 19 C 1.50699 * 119.94006 * 179.74529 * 18 17 16 20 20 O 1.42900 * 109.46877 * 245.02208 * 19 18 17 21 21 Si 1.86294 * 109.47510 * 5.02462 * 19 18 17 22 22 H 1.48499 * 109.47324 * 59.99738 * 21 19 18 23 23 H 1.48501 * 109.47116 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47036 * 299.99945 * 21 19 18 25 25 C 1.38264 * 120.11128 * 359.77006 * 18 17 16 26 26 C 1.38146 * 120.05428 * 359.97438 * 25 18 17 27 27 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 28 28 C 1.38235 * 119.99567 * 270.01874 * 5 2 1 29 29 H 1.09001 * 109.47205 * 299.99925 * 1 2 3 30 30 H 1.08999 * 109.47227 * 59.99973 * 1 2 3 31 31 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46574 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47152 * 300.00073 * 3 2 1 34 34 H 1.09000 * 109.46711 * 60.00392 * 3 2 1 35 35 H 1.09007 * 109.47223 * 300.00044 * 4 2 1 36 36 H 1.08999 * 109.47337 * 59.99891 * 4 2 1 37 37 H 1.09000 * 109.47073 * 180.02562 * 4 2 1 38 38 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 39 39 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 41 41 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 42 42 H 0.96993 * 119.99824 * 0.02562 * 10 9 8 43 43 H 1.08994 * 109.47437 * 299.99933 * 13 11 10 44 44 H 1.09001 * 109.46970 * 60.00315 * 13 11 10 45 45 H 1.08006 * 120.02719 * 359.97438 * 16 15 14 46 46 H 1.07996 * 119.97695 * 180.23075 * 17 16 15 47 47 H 1.09002 * 109.46835 * 125.02719 * 19 18 17 48 48 H 0.96696 * 114.00163 * 180.02562 * 20 19 18 49 49 H 1.07992 * 119.97250 * 179.97438 * 25 18 17 50 50 H 1.08004 * 120.02518 * 179.97438 * 26 25 18 51 51 H 1.08001 * 120.00279 * 180.02562 * 27 8 7 52 52 H 1.07997 * 120.00423 * 359.97438 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7161 -2.2433 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9021 -2.8958 5.0152 10 7 5.3671 -2.9027 5.0195 11 6 6.0352 -3.4889 6.0325 12 8 5.4237 -4.0104 6.9409 13 6 7.5422 -3.4965 6.0367 14 8 8.0119 -4.1713 7.2055 15 6 9.3583 -4.2664 7.3638 16 6 10.2098 -3.7266 6.4109 17 6 11.5781 -3.8200 6.5767 18 6 12.0991 -4.4601 7.6862 19 6 13.5921 -4.5655 7.8616 20 8 13.9836 -5.9383 7.7965 21 14 14.4454 -3.6115 6.5080 22 1 14.0386 -2.1849 6.5757 23 1 15.9167 -3.7159 6.6807 24 1 14.0613 -4.1737 5.1884 25 6 11.2525 -5.0039 8.6345 26 6 9.8835 -4.9085 8.4758 27 6 3.1773 -0.8214 3.8166 28 6 2.7157 -0.1698 2.6882 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2702 0.8900 35 1 2.1206 -1.9059 -1.5212 36 1 2.1206 -0.3644 -2.4111 37 1 3.5740 -0.8786 -1.5210 38 1 2.5358 -2.7987 0.5824 39 1 3.3560 -3.9596 2.5931 40 1 3.5386 -2.3794 5.9037 41 1 3.5339 -3.9217 5.0151 42 1 5.8561 -2.4853 4.2933 43 1 7.9054 -4.0128 5.1482 44 1 7.9107 -2.4707 6.0371 45 1 9.8033 -3.2304 5.5419 46 1 12.2414 -3.3966 5.8371 47 1 13.8741 -4.1528 8.8303 48 1 14.9339 -6.0817 7.9023 49 1 11.6618 -5.5037 9.4999 50 1 9.2227 -5.3339 9.2167 51 1 3.3576 -0.2659 4.7251 52 1 2.5358 0.8947 2.7150 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_2989410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:48:49 Heat of formation + Delta-G solvation = -92.100154 kcal Electronic energy + Delta-G solvation = -29406.745036 eV Core-core repulsion = 25266.991508 eV Total energy + Delta-G solvation = -4139.753528 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 373.167 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.60172 -40.77721 -39.91654 -38.90711 -37.19756 -36.09204 -32.78700 -32.26706 -31.86436 -31.81921 -29.84741 -29.34202 -28.28535 -28.27076 -26.79061 -25.99995 -24.03301 -23.45614 -22.36104 -22.08249 -21.67076 -19.53708 -18.73659 -18.41494 -17.54489 -17.42289 -17.34731 -16.80776 -16.54295 -16.41190 -15.89179 -15.68806 -15.64934 -15.50733 -14.98429 -14.47327 -14.44319 -14.33533 -14.18485 -14.06657 -14.02733 -13.91756 -13.90066 -13.70440 -13.49418 -13.45354 -13.36251 -13.14467 -13.10720 -12.96132 -12.67366 -12.46553 -12.22576 -12.09365 -11.92512 -11.83904 -11.69087 -11.22027 -10.89008 -10.76185 -10.75128 -10.33102 -10.27466 -10.06239 -9.79616 -9.66318 -9.24277 0.16999 0.24159 0.28487 0.53012 1.19273 1.36689 1.47773 1.48421 1.53036 1.85144 1.92134 2.03433 2.09504 2.56847 2.60957 2.67256 2.97814 3.46923 3.53996 3.65006 3.74408 3.84201 3.88811 3.96360 4.02623 4.03357 4.15942 4.26351 4.33627 4.40094 4.47129 4.55381 4.58787 4.68110 4.75078 4.84368 4.84551 4.88925 4.90250 4.90452 4.91043 4.93704 5.01011 5.13666 5.17618 5.18263 5.21462 5.41028 5.48592 5.59137 5.59660 5.62414 5.66717 5.67929 5.72091 6.12943 6.20811 6.38338 6.84777 7.01894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.372 4.372 6 C -0.100 4.100 7 C -0.121 4.121 8 C -0.107 4.107 9 C 0.165 3.835 10 N -0.705 5.705 11 C 0.514 3.486 12 O -0.571 6.571 13 C 0.037 3.963 14 O -0.317 6.317 15 C 0.119 3.881 16 C -0.202 4.202 17 C -0.092 4.092 18 C -0.126 4.126 19 C -0.081 4.081 20 O -0.565 6.565 21 Si 0.979 3.021 22 H -0.256 1.256 23 H -0.257 1.257 24 H -0.268 1.268 25 C -0.056 4.056 26 C -0.163 4.163 27 C -0.121 4.121 28 C -0.100 4.100 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.419 0.581 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.161 0.839 46 H 0.137 0.863 47 H 0.093 0.907 48 H 0.397 0.603 49 H 0.143 0.857 50 H 0.132 0.868 51 H 0.127 0.873 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 4.971 -5.996 8.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.314 2.686 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.118 4.118 7 C -0.140 4.140 8 C -0.108 4.108 9 C 0.042 3.958 10 N -0.360 5.360 11 C 0.300 3.700 12 O -0.450 6.450 13 C -0.040 4.040 14 O -0.231 6.231 15 C 0.074 3.926 16 C -0.220 4.220 17 C -0.110 4.110 18 C -0.126 4.126 19 C -0.190 4.190 20 O -0.374 6.374 21 Si 0.803 3.197 22 H -0.180 1.180 23 H -0.182 1.182 24 H -0.193 1.193 25 C -0.074 4.074 26 C -0.182 4.182 27 C -0.139 4.139 28 C -0.118 4.118 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.256 0.744 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.179 0.821 46 H 0.155 0.845 47 H 0.111 0.889 48 H 0.247 0.753 49 H 0.161 0.839 50 H 0.150 0.850 51 H 0.145 0.855 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.020 4.871 -5.887 7.903 hybrid contribution 0.380 -0.238 0.382 0.589 sum 2.401 4.633 -5.505 7.585 Atomic orbital electron populations 1.26341 1.22086 1.04362 1.04471 0.77146 0.64881 0.64694 0.61838 1.26277 1.06524 1.19329 1.04799 1.26283 1.06520 1.08432 1.15722 1.27948 1.02530 0.99640 1.11083 1.21374 0.97093 0.95083 0.98266 1.21349 0.99421 1.00277 0.92938 1.19762 1.02136 0.94339 0.94523 1.20146 0.79360 1.00397 0.95867 1.45761 1.07031 1.58225 1.24937 1.20529 0.89873 0.77791 0.81776 1.90766 1.70681 1.46050 1.37476 1.22712 0.90882 1.01084 0.89358 1.86125 1.19709 1.73806 1.43411 1.19200 0.81675 0.96390 0.95378 1.21420 0.93577 1.05859 1.01140 1.21044 0.95387 0.98061 0.96508 1.19518 0.94910 1.01929 0.96246 1.24763 0.94943 0.89471 1.09866 1.86468 1.30909 1.23586 1.96416 0.85290 0.78662 0.78307 0.77430 1.17962 1.18162 1.19272 1.20974 0.91337 0.96097 0.99009 1.20676 0.95801 1.03560 0.98159 1.21354 0.99389 0.93809 0.99396 1.21380 0.97072 1.00734 0.92616 0.91503 0.90815 0.91520 0.91085 0.90818 0.90961 0.90989 0.90820 0.91094 0.84486 0.85565 0.91201 0.91258 0.74388 0.85840 0.85652 0.82141 0.84540 0.88907 0.75269 0.83890 0.84974 0.85507 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.04 8.65 113.37 0.98 3.02 16 2 Si 1.13 -8.38 12.32 68.60 0.85 -7.54 16 3 C -0.46 2.79 8.53 113.37 0.97 3.76 16 4 C -0.46 2.75 8.53 113.37 0.97 3.72 16 5 C -0.37 1.24 4.59 22.27 0.10 1.35 16 6 C -0.10 0.24 9.29 22.27 0.21 0.44 16 7 C -0.12 0.13 9.70 22.27 0.22 0.34 16 8 C -0.11 0.06 5.25 -19.87 -0.10 -0.04 16 9 C 0.17 0.18 5.80 85.63 0.50 0.68 16 10 N -0.71 1.00 5.55 -466.79 -2.59 -1.59 16 11 C 0.51 2.42 7.91 87.66 0.69 3.11 16 12 O -0.57 -9.20 16.50 16.01 0.26 -8.94 16 13 C 0.04 -0.04 5.22 71.24 0.37 0.33 16 14 O -0.32 -2.50 9.67 -73.45 -0.71 -3.21 16 15 C 0.12 0.70 6.69 22.50 0.15 0.85 16 16 C -0.20 -0.24 9.04 22.36 0.20 -0.03 16 17 C -0.09 -0.18 8.66 22.26 0.19 0.01 16 18 C -0.13 -0.42 5.39 -19.85 -0.11 -0.53 16 19 C -0.08 0.08 2.79 71.24 0.20 0.28 16 20 O -0.56 -0.20 12.81 -148.98 -1.91 -2.11 16 21 Si 0.98 -2.06 25.14 68.60 1.72 -0.34 16 22 H -0.26 0.34 7.11 99.48 0.71 1.05 16 23 H -0.26 0.55 7.11 99.48 0.71 1.26 16 24 H -0.27 -0.24 7.04 99.48 0.70 0.46 16 25 C -0.06 -0.25 9.68 22.25 0.22 -0.03 16 26 C -0.16 -1.06 9.99 22.37 0.22 -0.84 16 27 C -0.12 0.14 9.70 22.27 0.22 0.36 16 28 C -0.10 0.25 9.29 22.27 0.21 0.45 16 29 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 31 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 32 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 33 H 0.07 -0.44 7.96 -2.39 -0.02 -0.45 16 34 H 0.07 -0.45 7.69 -2.39 -0.02 -0.47 16 35 H 0.07 -0.44 7.69 -2.38 -0.02 -0.46 16 36 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 37 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 38 H 0.14 -0.81 7.43 -2.91 -0.02 -0.83 16 39 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 40 H 0.07 0.22 8.08 -2.39 -0.02 0.20 16 41 H 0.07 0.22 8.09 -2.39 -0.02 0.20 16 42 H 0.42 -3.18 8.46 -92.71 -0.78 -3.96 16 43 H 0.12 -0.86 7.65 -2.39 -0.02 -0.88 16 44 H 0.13 -0.93 7.67 -2.39 -0.02 -0.95 16 45 H 0.16 -0.96 6.30 -2.91 -0.02 -0.98 16 46 H 0.14 -0.20 4.86 -2.91 -0.01 -0.22 16 47 H 0.09 -0.45 7.96 -2.39 -0.02 -0.47 16 48 H 0.40 -3.47 8.74 -74.06 -0.65 -4.12 16 49 H 0.14 0.23 8.06 -2.91 -0.02 0.20 16 50 H 0.13 0.80 8.06 -2.91 -0.02 0.78 16 51 H 0.13 -0.38 8.06 -2.91 -0.02 -0.40 16 52 H 0.14 -0.84 7.43 -2.91 -0.02 -0.86 16 Total: 0.00 -24.23 433.95 4.27 -19.96 By element: Atomic # 1 Polarization: -13.70 SS G_CDS: 0.25 Total: -13.45 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.40 Total: 17.21 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -2.59 Total: -1.59 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -2.35 Total: -14.25 kcal Atomic # 14 Polarization: -10.45 SS G_CDS: 2.57 Total: -7.88 kcal Total: -24.23 4.27 -19.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_2989410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.140 kcal (2) G-P(sol) polarization free energy of solvation -24.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds