Wall clock time and date at job start Sat Mar 6 2021 17:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47001 * 2 1 4 4 C 1.86299 * 109.46874 * 240.00203 * 2 1 3 5 5 C 1.86799 * 109.47028 * 120.00401 * 2 1 3 6 6 C 1.38234 * 120.00228 * 90.00161 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 N 1.46500 * 109.47298 * 89.99945 * 9 8 7 11 11 C 1.34770 * 119.99686 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00567 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99863 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47207 * 179.97438 * 13 11 10 15 15 C 1.35920 * 117.00157 * 180.02562 * 14 13 11 16 16 C 1.38678 * 120.05284 * 359.72501 * 15 14 13 17 17 C 1.38193 * 119.94805 * 179.72171 * 16 15 14 18 18 C 1.38240 * 120.07483 * 0.53550 * 17 16 15 19 19 C 1.50694 * 119.94505 * 179.74469 * 18 17 16 20 20 O 1.42898 * 109.47444 * 120.01607 * 19 18 17 21 21 Si 1.86301 * 109.47007 * 0.02562 * 19 18 17 22 22 H 1.48498 * 109.47138 * 60.00387 * 21 19 18 23 23 H 1.48501 * 109.47145 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47200 * 300.00097 * 21 19 18 25 25 C 1.38286 * 120.11418 * 359.76002 * 18 17 16 26 26 C 1.38197 * 120.04860 * 359.95993 * 25 18 17 27 27 Br 1.89103 * 120.03843 * 179.97438 * 26 25 18 28 28 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 29 29 C 1.38235 * 119.99567 * 270.01874 * 5 2 1 30 30 H 1.09001 * 109.47205 * 299.99925 * 1 2 3 31 31 H 1.08999 * 109.47227 * 59.99973 * 1 2 3 32 32 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46574 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47152 * 300.00073 * 3 2 1 35 35 H 1.09000 * 109.46711 * 60.00392 * 3 2 1 36 36 H 1.09007 * 109.47223 * 300.00044 * 4 2 1 37 37 H 1.08999 * 109.47337 * 59.99891 * 4 2 1 38 38 H 1.09000 * 109.47073 * 180.02562 * 4 2 1 39 39 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 40 40 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 41 41 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 42 42 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 43 43 H 0.96993 * 119.99824 * 0.02562 * 10 9 8 44 44 H 1.08994 * 109.47437 * 299.99933 * 13 11 10 45 45 H 1.09001 * 109.46970 * 60.00315 * 13 11 10 46 46 H 1.07992 * 120.02813 * 0.02562 * 16 15 14 47 47 H 1.08003 * 119.96521 * 180.27610 * 17 16 15 48 48 H 1.09000 * 109.47159 * 240.01939 * 19 18 17 49 49 H 0.96703 * 114.00482 * 300.00185 * 20 19 18 50 50 H 1.08000 * 119.98028 * 179.97438 * 25 18 17 51 51 H 1.08001 * 120.00279 * 180.02562 * 28 8 7 52 52 H 1.07997 * 120.00423 * 359.97438 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7161 -2.2433 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9021 -2.8958 5.0152 10 7 5.3671 -2.9027 5.0195 11 6 6.0352 -3.4889 6.0325 12 8 5.4237 -4.0104 6.9409 13 6 7.5422 -3.4965 6.0367 14 8 8.0119 -4.1713 7.2055 15 6 9.3585 -4.2665 7.3639 16 6 10.2097 -3.7269 6.4112 17 6 11.5784 -3.8198 6.5773 18 6 12.0999 -4.4597 7.6862 19 6 13.5929 -4.5645 7.8614 20 8 13.9762 -3.9197 9.0777 21 14 14.4461 -3.7390 6.4256 22 1 14.0531 -2.3079 6.3726 23 1 15.9174 -3.8427 6.5979 24 1 14.0478 -4.4088 5.1615 25 6 11.2537 -5.0042 8.6348 26 6 9.8842 -4.9090 8.4766 27 35 8.7273 -5.6543 9.7737 28 6 3.1773 -0.8214 3.8166 29 6 2.7157 -0.1698 2.6882 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1207 2.2703 -0.8900 35 1 2.1207 2.2702 0.8900 36 1 2.1206 -1.9059 -1.5212 37 1 2.1206 -0.3644 -2.4111 38 1 3.5740 -0.8786 -1.5210 39 1 2.5358 -2.7987 0.5824 40 1 3.3560 -3.9596 2.5931 41 1 3.5386 -2.3794 5.9037 42 1 3.5339 -3.9217 5.0151 43 1 5.8561 -2.4853 4.2933 44 1 7.9054 -4.0128 5.1482 45 1 7.9107 -2.4707 6.0371 46 1 9.8032 -3.2301 5.5428 47 1 12.2416 -3.3958 5.8378 48 1 13.8814 -5.6149 7.9004 49 1 13.7500 -2.9802 9.1131 50 1 11.6634 -5.5040 9.5001 51 1 3.3576 -0.2659 4.7251 52 1 2.5358 0.8947 2.7150 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_6201210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:09:02 Heat of formation + Delta-G solvation = -86.302272 kcal Electronic energy + Delta-G solvation = -31670.165618 eV Core-core repulsion = 27190.845502 eV Total energy + Delta-G solvation = -4479.320116 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 451.077 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.72053 -40.84510 -39.94232 -39.08457 -37.22500 -36.07216 -33.65684 -32.60646 -31.89352 -31.85749 -30.55659 -29.79151 -29.34004 -28.28060 -28.26858 -26.86199 -26.11384 -23.99644 -23.44904 -22.46150 -22.08698 -21.72636 -19.64770 -18.81996 -18.24570 -17.60174 -17.44110 -17.22098 -16.85077 -16.46197 -16.29901 -16.07416 -15.83625 -15.74447 -15.53929 -15.17004 -14.88645 -14.59473 -14.33718 -14.16963 -14.09614 -14.02521 -13.91362 -13.84609 -13.75159 -13.70719 -13.53080 -13.44666 -13.14264 -13.10285 -12.95760 -12.66572 -12.38713 -12.23327 -12.22118 -12.04730 -11.91787 -11.89694 -11.67726 -11.22551 -11.20263 -10.88476 -10.75568 -10.74697 -10.40971 -10.30699 -9.98725 -9.78930 -9.65585 -9.33881 -0.09069 0.09994 0.17637 0.53682 0.62397 1.21065 1.39936 1.42483 1.50374 1.54418 1.85643 1.96622 2.03917 2.09073 2.37162 2.50716 2.67663 2.97852 3.45504 3.48663 3.63137 3.67574 3.72840 3.79779 3.89535 3.97554 4.03156 4.08362 4.16660 4.32853 4.34444 4.56120 4.58734 4.62305 4.64327 4.75798 4.82926 4.84484 4.84725 4.89290 4.90609 4.90927 4.91509 4.95986 5.01800 5.18929 5.19077 5.20090 5.41665 5.46296 5.59826 5.59969 5.63168 5.68188 5.72621 6.01940 6.13657 6.37580 6.72763 7.05214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.372 4.372 6 C -0.100 4.100 7 C -0.121 4.121 8 C -0.106 4.106 9 C 0.166 3.834 10 N -0.705 5.705 11 C 0.512 3.488 12 O -0.568 6.568 13 C 0.034 3.966 14 O -0.304 6.304 15 C 0.147 3.853 16 C -0.191 4.191 17 C -0.068 4.068 18 C -0.151 4.151 19 C -0.080 4.080 20 O -0.555 6.555 21 Si 0.984 3.016 22 H -0.243 1.243 23 H -0.279 1.279 24 H -0.248 1.248 25 C -0.030 4.030 26 C -0.143 4.143 27 Br -0.052 7.052 28 C -0.121 4.121 29 C -0.100 4.100 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.419 0.581 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.176 0.824 47 H 0.153 0.847 48 H 0.123 0.877 49 H 0.389 0.611 50 H 0.143 0.857 51 H 0.127 0.873 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 5.732 -9.690 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.314 2.686 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.412 4.412 6 C -0.118 4.118 7 C -0.140 4.140 8 C -0.107 4.107 9 C 0.043 3.957 10 N -0.360 5.360 11 C 0.299 3.701 12 O -0.446 6.446 13 C -0.043 4.043 14 O -0.217 6.217 15 C 0.099 3.901 16 C -0.210 4.210 17 C -0.086 4.086 18 C -0.152 4.152 19 C -0.190 4.190 20 O -0.362 6.362 21 Si 0.807 3.193 22 H -0.167 1.167 23 H -0.205 1.205 24 H -0.172 1.172 25 C -0.050 4.050 26 C -0.223 4.223 27 Br 0.033 6.967 28 C -0.139 4.139 29 C -0.118 4.118 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.256 0.744 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.193 0.807 47 H 0.170 0.830 48 H 0.141 0.859 49 H 0.239 0.761 50 H 0.161 0.839 51 H 0.145 0.855 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.721 4.772 -8.904 10.248 hybrid contribution -0.226 0.298 0.156 0.406 sum 1.494 5.070 -8.748 10.221 Atomic orbital electron populations 1.26352 1.22189 1.04340 1.04443 0.77144 0.64816 0.64710 0.61888 1.26277 1.06551 1.19322 1.04776 1.26279 1.06551 1.08418 1.15683 1.27931 1.02545 0.99649 1.11055 1.21372 0.97083 0.95064 0.98282 1.21345 0.99422 1.00264 0.92921 1.19759 1.02113 0.94305 0.94516 1.20123 0.79479 1.00317 0.95786 1.45743 1.06935 1.58322 1.24983 1.20514 0.89888 0.77918 0.81823 1.90794 1.70624 1.45809 1.37349 1.22819 0.91069 1.01301 0.89146 1.86246 1.18692 1.73240 1.43491 1.18797 0.82817 0.94771 0.93679 1.21507 0.93464 1.05238 1.00744 1.21261 0.95305 0.95489 0.96502 1.20397 0.96931 1.01902 0.96019 1.25100 0.92062 1.04358 0.97468 1.86503 1.83200 1.28763 1.37707 0.85212 0.78227 0.80138 0.75727 1.16651 1.20472 1.17209 1.20907 0.89138 0.95904 0.99064 1.21308 0.94555 1.09476 0.96934 1.96765 1.64212 1.82930 1.52812 1.21349 0.99412 0.93830 0.99357 1.21376 0.97076 1.00721 0.92629 0.91538 0.90845 0.91538 0.91033 0.90846 0.90990 0.90993 0.90848 0.91034 0.84500 0.85556 0.91339 0.91346 0.74366 0.85188 0.85174 0.80721 0.83000 0.85901 0.76142 0.83914 0.85547 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.18 8.65 113.37 0.98 3.16 16 2 Si 1.13 -8.93 12.32 68.60 0.85 -8.09 16 3 C -0.46 3.01 8.53 113.37 0.97 3.98 16 4 C -0.46 3.01 8.53 113.37 0.97 3.97 16 5 C -0.37 1.47 4.59 22.27 0.10 1.57 16 6 C -0.10 0.31 9.29 22.27 0.21 0.51 16 7 C -0.12 0.22 9.70 22.27 0.22 0.44 16 8 C -0.11 0.15 5.25 -19.87 -0.10 0.04 16 9 C 0.17 0.04 5.80 85.63 0.50 0.54 16 10 N -0.71 2.02 5.55 -466.79 -2.59 -0.57 16 11 C 0.51 1.54 7.91 87.66 0.69 2.24 16 12 O -0.57 -8.49 16.50 16.01 0.26 -8.22 16 13 C 0.03 -0.13 5.22 71.24 0.37 0.24 16 14 O -0.30 -1.70 9.01 -73.62 -0.66 -2.36 16 15 C 0.15 0.46 6.68 22.52 0.15 0.61 16 16 C -0.19 0.75 9.04 22.36 0.20 0.96 16 17 C -0.07 0.28 8.66 22.26 0.19 0.48 16 18 C -0.15 0.21 5.39 -19.85 -0.11 0.10 16 19 C -0.08 0.26 2.82 71.23 0.20 0.46 16 20 O -0.55 0.56 12.77 -148.98 -1.90 -1.34 16 21 Si 0.98 -4.80 25.07 68.60 1.72 -3.08 16 22 H -0.24 1.46 7.11 99.48 0.71 2.17 16 23 H -0.28 0.04 7.11 99.48 0.71 0.74 16 24 H -0.25 1.25 7.11 99.48 0.71 1.96 16 25 C -0.03 -0.08 9.35 22.27 0.21 0.13 16 26 C -0.14 -0.85 6.24 22.40 0.14 -0.71 16 27 Br -0.05 -0.51 33.16 -20.37 -0.68 -1.19 16 28 C -0.12 0.22 9.70 22.27 0.22 0.44 16 29 C -0.10 0.31 9.29 22.27 0.21 0.51 16 30 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 31 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 32 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 33 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 34 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 35 H 0.07 -0.48 7.69 -2.39 -0.02 -0.50 16 36 H 0.07 -0.48 7.69 -2.38 -0.02 -0.50 16 37 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 38 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 39 H 0.14 -0.90 7.43 -2.91 -0.02 -0.92 16 40 H 0.13 -0.45 8.06 -2.91 -0.02 -0.47 16 41 H 0.07 0.17 8.08 -2.39 -0.02 0.15 16 42 H 0.07 0.17 8.09 -2.39 -0.02 0.16 16 43 H 0.42 -3.89 8.46 -92.71 -0.78 -4.67 16 44 H 0.13 -1.38 7.65 -2.39 -0.02 -1.40 16 45 H 0.13 -1.39 7.67 -2.39 -0.02 -1.41 16 46 H 0.18 -2.06 6.30 -2.91 -0.02 -2.08 16 47 H 0.15 -1.34 4.87 -2.91 -0.01 -1.36 16 48 H 0.12 -0.52 7.96 -2.39 -0.02 -0.54 16 49 H 0.39 -2.93 8.70 -74.06 -0.64 -3.58 16 50 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 51 H 0.13 -0.46 8.06 -2.91 -0.02 -0.48 16 52 H 0.14 -0.90 7.43 -2.91 -0.02 -0.93 16 Total: 0.00 -24.92 454.26 3.59 -21.33 By element: Atomic # 1 Polarization: -16.43 SS G_CDS: 0.28 Total: -16.15 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.31 Total: 19.67 kcal Atomic # 7 Polarization: 2.02 SS G_CDS: -2.59 Total: -0.57 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -2.30 Total: -11.92 kcal Atomic # 14 Polarization: -13.73 SS G_CDS: 2.56 Total: -11.17 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.68 Total: -1.19 kcal Total: -24.92 3.59 -21.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_6201210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.976 kcal (2) G-P(sol) polarization free energy of solvation -24.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds