Wall clock time and date at job start Sat Mar 6 2021 17:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 N 1.46501 * 109.47472 * 270.28569 * 9 8 7 11 11 C 1.34772 * 120.00233 * 179.97438 * 10 9 8 12 12 O 1.21700 * 120.00125 * 359.97438 * 11 10 9 13 13 C 1.46681 * 120.00093 * 179.97438 * 11 10 9 14 14 C 1.37870 * 126.23457 * 179.69267 * 13 11 10 15 15 C 1.39829 * 107.08576 * 179.84719 * 14 13 11 16 16 C 1.35459 * 107.86536 * 0.41295 * 15 14 13 17 17 C 1.50698 * 125.56237 * 179.72336 * 16 15 14 18 18 O 1.42892 * 109.46985 * 120.02890 * 17 16 15 19 19 Si 1.86301 * 109.47516 * 0.02562 * 17 16 15 20 20 H 1.48497 * 109.46755 * 60.00226 * 19 17 16 21 21 H 1.48497 * 109.47152 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46990 * 300.00440 * 19 17 16 23 23 N 1.35532 * 108.86849 * 359.74163 * 16 15 14 24 24 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 25 25 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 26 26 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 27 27 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 28 28 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 31 31 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 32 32 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 33 33 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 34 34 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 37 37 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 38 38 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 39 39 H 0.97001 * 119.99412 * 359.97438 * 10 9 8 40 40 H 1.08005 * 126.45433 * 359.97438 * 14 13 11 41 41 H 1.08001 * 126.07231 * 180.15834 * 15 14 13 42 42 H 1.09006 * 109.46468 * 240.02082 * 17 16 15 43 43 H 0.96699 * 114.00428 * 299.99087 * 18 17 16 44 44 H 0.96998 * 125.67560 * 179.97438 * 23 16 15 45 45 H 1.08001 * 120.00310 * 179.72161 * 24 8 7 46 46 H 1.07997 * 120.00460 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 7 2.7675 -3.3550 5.8102 11 6 2.9760 -4.0212 6.9631 12 8 4.1114 -4.2407 7.3423 13 6 1.8345 -4.4818 7.7608 14 6 1.8987 -5.1760 8.9502 15 6 0.5827 -5.4070 9.3626 16 6 -0.2442 -4.8699 8.4338 17 6 -1.7502 -4.8969 8.4807 18 8 -2.2503 -3.5585 8.4960 19 14 -2.3079 -5.7859 10.0200 20 1 -1.7881 -5.0769 11.2167 21 1 -3.7919 -5.8131 10.0658 22 1 -1.7880 -7.1769 10.0040 23 7 0.5041 -4.3047 7.4552 24 6 3.1758 -0.8214 3.8172 25 6 2.7155 -0.1696 2.6883 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.5357 -2.7986 0.5826 36 1 3.3471 -3.9610 2.5960 37 1 4.5134 -3.7509 4.7175 38 1 4.5127 -2.2094 5.6076 39 1 1.8625 -3.1804 5.5078 40 1 2.7963 -5.4819 9.4672 41 1 0.2792 -5.9254 10.2601 42 1 -2.1317 -5.4173 7.6021 43 1 -1.9508 -3.0352 9.2520 44 1 0.1594 -3.8513 6.6701 45 1 3.3551 -0.2660 4.7259 46 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10854838_6580494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:09:36 Heat of formation + Delta-G solvation = -50.672126 kcal Electronic energy + Delta-G solvation = -25034.396266 eV Core-core repulsion = 21433.459232 eV Total energy + Delta-G solvation = -3600.937034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50619 -40.62878 -39.70903 -37.80613 -36.02108 -32.80231 -31.97905 -31.96366 -31.25741 -29.63522 -28.51158 -28.48607 -27.74049 -26.13556 -23.56426 -23.17109 -22.19279 -21.53298 -21.11058 -19.96073 -18.34620 -17.58538 -16.94260 -16.81365 -16.52836 -16.34918 -15.91284 -15.76291 -15.34446 -15.13698 -14.70170 -14.60184 -14.44513 -14.34135 -14.18443 -14.11652 -14.06151 -13.94202 -13.76510 -13.58295 -13.49964 -13.32125 -13.30197 -13.17235 -12.77172 -12.39536 -12.18213 -12.04993 -11.92778 -11.30739 -11.07798 -10.97655 -10.91246 -10.76807 -10.24954 -10.07134 -9.89024 -9.76220 -9.25086 0.09146 0.37065 0.43511 0.96885 1.41989 1.46507 1.58958 1.62309 1.77356 1.80386 1.82425 2.09121 2.17876 2.39979 2.46692 2.88331 3.26318 3.52714 3.58437 3.82633 3.84529 4.03211 4.23619 4.26652 4.30821 4.40446 4.42024 4.61724 4.63216 4.63528 4.64847 4.68349 4.68989 4.69642 4.71091 4.91881 5.00169 5.06481 5.07277 5.22187 5.30914 5.38603 5.43223 5.46664 5.53507 5.54726 5.59076 5.82461 6.01342 6.20954 6.32680 6.42551 7.11651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.362 4.362 6 C -0.090 4.090 7 C -0.112 4.112 8 C -0.104 4.104 9 C 0.161 3.839 10 N -0.728 5.728 11 C 0.590 3.410 12 O -0.524 6.524 13 C -0.051 4.051 14 C -0.097 4.097 15 C -0.207 4.207 16 C 0.022 3.978 17 C -0.068 4.068 18 O -0.542 6.542 19 Si 0.978 3.022 20 H -0.247 1.247 21 H -0.253 1.253 22 H -0.247 1.247 23 N -0.521 5.521 24 C -0.112 4.112 25 C -0.090 4.090 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.381 0.619 44 H 0.417 0.583 45 H 0.121 0.879 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 1.523 -2.437 4.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.404 4.404 6 C -0.108 4.108 7 C -0.130 4.130 8 C -0.104 4.104 9 C 0.039 3.961 10 N -0.380 5.380 11 C 0.377 3.623 12 O -0.400 6.400 13 C -0.164 4.164 14 C -0.123 4.123 15 C -0.231 4.231 16 C -0.096 4.096 17 C -0.178 4.178 18 O -0.347 6.347 19 Si 0.798 3.202 20 H -0.170 1.170 21 H -0.176 1.176 22 H -0.170 1.170 23 N -0.118 5.118 24 C -0.130 4.130 25 C -0.108 4.108 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.230 0.770 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.229 0.771 44 H 0.255 0.745 45 H 0.139 0.861 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.455 0.795 -2.064 4.102 hybrid contribution -0.007 0.634 -0.419 0.760 sum -3.462 1.429 -2.483 4.493 Atomic orbital electron populations 1.26125 1.20437 1.04560 1.04543 0.78179 0.66839 0.66127 0.63687 1.26143 1.06503 1.18552 1.04601 1.26143 1.06505 1.08039 1.15114 1.27476 1.03111 0.99527 1.10244 1.21106 0.97279 0.94660 0.97744 1.21194 0.99179 0.99786 0.92886 1.19850 1.01443 0.94218 0.94916 1.20248 0.87950 0.98797 0.89121 1.45959 1.09988 1.58714 1.23311 1.17061 0.87632 0.77595 0.79977 1.90883 1.22222 1.56633 1.70217 1.20433 0.82515 1.12471 1.00989 1.21315 0.97890 0.99023 0.94075 1.20726 0.92697 1.08277 1.01431 1.21113 0.94070 1.02842 0.91598 1.24910 0.88103 0.90501 1.14309 1.86507 1.73533 1.23025 1.51673 0.85257 0.80389 0.79775 0.74819 1.17043 1.17648 1.16985 1.41928 1.05220 1.44214 1.20426 1.21197 0.99141 0.93869 0.98814 1.21106 0.97245 0.99780 0.92647 0.91182 0.90973 0.91196 0.91028 0.90902 0.91181 0.91187 0.90901 0.91026 0.85932 0.86106 0.90191 0.90192 0.77047 0.82940 0.83597 0.86220 0.77123 0.74501 0.86099 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.97 8.65 101.05 0.87 1.84 16 2 Si 1.06 -3.36 12.32 -169.99 -2.09 -5.46 16 3 C -0.45 1.02 8.53 101.05 0.86 1.88 16 4 C -0.45 1.02 8.53 101.05 0.86 1.89 16 5 C -0.36 0.42 4.59 -39.58 -0.18 0.24 16 6 C -0.09 0.07 9.29 -39.58 -0.37 -0.30 16 7 C -0.11 0.03 9.70 -39.58 -0.38 -0.36 16 8 C -0.10 0.01 5.25 -104.63 -0.55 -0.54 16 9 C 0.16 0.07 5.80 -5.19 -0.03 0.04 16 10 N -0.73 -0.17 5.54 -62.80 -0.35 -0.52 16 11 C 0.59 1.80 7.79 -12.85 -0.10 1.70 16 12 O -0.52 -3.57 16.88 5.19 0.09 -3.48 16 13 C -0.05 -0.09 7.06 -81.98 -0.58 -0.67 16 14 C -0.10 -0.21 10.65 -39.12 -0.42 -0.63 16 15 C -0.21 -0.13 9.32 -39.98 -0.37 -0.50 16 16 C 0.02 -0.01 6.47 -81.95 -0.53 -0.54 16 17 C -0.07 0.13 3.08 36.00 0.11 0.24 16 18 O -0.54 0.77 12.88 -35.23 -0.45 0.32 16 19 Si 0.98 -1.85 25.83 -169.99 -4.39 -6.24 16 20 H -0.25 0.36 7.11 56.52 0.40 0.76 16 21 H -0.25 0.13 7.11 56.52 0.40 0.53 16 22 H -0.25 0.26 7.11 56.52 0.40 0.67 16 23 N -0.52 0.29 5.99 -5.69 -0.03 0.25 16 24 C -0.11 0.03 9.70 -39.58 -0.38 -0.36 16 25 C -0.09 0.06 9.29 -39.58 -0.37 -0.30 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 32 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 35 H 0.12 -0.29 7.43 -52.49 -0.39 -0.68 16 36 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 37 H 0.08 0.08 8.09 -51.93 -0.42 -0.34 16 38 H 0.08 0.08 8.09 -51.93 -0.42 -0.34 16 39 H 0.40 -0.75 7.59 -40.82 -0.31 -1.06 16 40 H 0.15 0.29 8.06 -52.48 -0.42 -0.13 16 41 H 0.15 -0.13 6.17 -52.49 -0.32 -0.46 16 42 H 0.12 -0.35 7.96 -51.93 -0.41 -0.77 16 43 H 0.38 -1.60 8.70 45.56 0.40 -1.20 16 44 H 0.42 -1.16 8.19 -40.82 -0.33 -1.49 16 45 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 46 H 0.12 -0.29 7.43 -52.49 -0.39 -0.68 16 LS Contribution 389.41 15.07 5.87 5.87 Total: 0.00 -7.73 389.41 -9.28 -17.01 By element: Atomic # 1 Polarization: -5.02 SS G_CDS: -6.36 Total: -11.39 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.55 Total: 3.63 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -0.38 Total: -0.27 kcal Atomic # 8 Polarization: -2.80 SS G_CDS: -0.37 Total: -3.16 kcal Atomic # 14 Polarization: -5.21 SS G_CDS: -6.48 Total: -11.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -7.73 -9.28 -17.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_6580494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.663 kcal (2) G-P(sol) polarization free energy of solvation -7.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds