Wall clock time and date at job start Sat Mar 6 2021 17:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33817 * 122.44755 * 2 1 4 4 C 1.50700 * 124.52386 * 359.95187 * 3 2 1 5 5 O 1.42901 * 109.47273 * 113.32965 * 4 3 2 6 6 Si 1.86298 * 109.47410 * 233.33082 * 4 3 2 7 7 H 1.48505 * 109.47285 * 59.99700 * 6 4 3 8 8 H 1.48494 * 109.47386 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46998 * 299.99977 * 6 4 3 10 10 S 1.70612 * 110.95478 * 179.97438 * 3 2 1 11 11 C 1.75830 * 91.56459 * 359.97438 * 10 3 2 12 12 C 1.46585 * 125.46253 * 179.97438 * 11 10 3 13 13 O 1.21698 * 120.00407 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99633 * 0.03127 * 12 11 10 15 15 C 1.46503 * 119.99958 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47093 * 179.97438 * 15 14 12 17 17 C 1.38238 * 120.00269 * 270.27948 * 16 15 14 18 18 C 1.38235 * 119.99921 * 180.23714 * 17 16 15 19 19 C 1.38234 * 120.00118 * 359.48151 * 18 17 16 20 20 Si 1.86796 * 119.99997 * 180.27897 * 19 18 17 21 21 C 1.86299 * 109.46947 * 90.00619 * 20 19 18 22 22 C 1.86301 * 109.47046 * 210.00375 * 20 19 18 23 23 C 1.86298 * 109.47247 * 330.00472 * 20 19 18 24 24 C 1.38232 * 119.99803 * 0.26634 * 19 18 17 25 25 C 1.38233 * 119.99933 * 90.00286 * 16 15 14 26 26 C 1.36656 * 109.08181 * 0.26474 * 11 10 3 27 27 H 1.09001 * 109.47030 * 84.89973 * 1 2 3 28 28 H 1.08997 * 109.47058 * 204.89602 * 1 2 3 29 29 H 1.08997 * 109.47252 * 324.89879 * 1 2 3 30 30 H 1.09000 * 109.47250 * 353.33186 * 4 3 2 31 31 H 0.96697 * 114.00018 * 59.99790 * 5 4 3 32 32 H 0.97007 * 120.00450 * 359.97438 * 14 12 11 33 33 H 1.09002 * 109.47132 * 60.00071 * 15 14 12 34 34 H 1.08996 * 109.47254 * 299.99498 * 15 14 12 35 35 H 1.07997 * 120.00030 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.99753 * 179.76841 * 18 17 16 37 37 H 1.08997 * 109.47167 * 59.99778 * 21 20 19 38 38 H 1.09002 * 109.46944 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47471 * 299.99596 * 21 20 19 40 40 H 1.09000 * 109.47263 * 60.00540 * 22 20 19 41 41 H 1.09002 * 109.47206 * 180.02562 * 22 20 19 42 42 H 1.08999 * 109.47570 * 299.99942 * 22 20 19 43 43 H 1.09001 * 109.47095 * 60.00450 * 23 20 19 44 44 H 1.09002 * 109.47091 * 180.02562 * 23 20 19 45 45 H 1.09000 * 109.47351 * 299.99637 * 23 20 19 46 46 H 1.08001 * 119.99913 * 180.02562 * 24 19 18 47 47 H 1.07998 * 119.99960 * 0.02562 * 25 16 15 48 48 H 1.08000 * 123.35203 * 179.73717 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5162 -0.0010 5 8 1.9393 3.1639 1.2360 6 14 2.3588 3.4974 -1.4098 7 1 2.0432 2.8244 -2.6954 8 1 1.7784 4.8642 -1.4104 9 1 3.8321 3.5860 -1.2462 10 16 3.8969 0.7893 0.0007 11 6 3.5938 -0.9426 0.0018 12 6 4.6232 -1.9862 0.0023 13 8 4.3003 -3.1596 0.0026 14 7 5.9273 -1.6462 0.0025 15 6 6.9562 -2.6891 0.0035 16 6 8.3204 -2.0488 0.0030 17 6 8.9437 -1.7510 -1.1944 18 6 10.1972 -1.1682 -1.1949 19 6 10.8228 -0.8734 0.0020 20 14 12.5133 -0.0787 0.0013 21 6 12.3280 1.7751 0.0003 22 6 13.4491 -0.6084 1.5226 23 6 13.4488 -0.6102 -1.5196 24 6 10.1973 -1.1664 1.1993 25 6 8.9461 -1.7541 1.1998 26 6 2.2446 -1.1600 -0.0044 27 1 -0.3633 0.0914 -1.0236 28 1 -0.3633 -0.9321 0.4326 29 1 -0.3633 0.8407 0.5909 30 1 0.5541 2.4512 -0.1211 31 1 2.8861 3.2564 1.4094 32 1 6.1848 -0.7109 0.0020 33 1 6.8459 -3.3092 -0.8861 34 1 6.8454 -3.3080 0.8939 35 1 8.4532 -1.9776 -2.1295 36 1 10.6858 -0.9390 -2.1304 37 1 11.7807 2.0860 0.8901 38 1 13.3145 2.2388 0.0003 39 1 11.7805 2.0851 -0.8898 40 1 13.5576 -1.6930 1.5233 41 1 14.4354 -0.1443 1.5225 42 1 12.9019 -0.2975 2.4125 43 1 12.9013 -0.3002 -2.4097 44 1 14.4354 -0.1468 -1.5198 45 1 13.5572 -1.6947 -1.5190 46 1 10.6859 -0.9357 2.1345 47 1 8.4574 -1.9830 2.1353 48 1 1.8019 -2.1451 -0.0092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10854838_6739946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:10:05 Heat of formation + Delta-G solvation = -68.438610 kcal Electronic energy + Delta-G solvation = -26697.972027 eV Core-core repulsion = 22967.078978 eV Total energy + Delta-G solvation = -3730.893048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99424 -40.12799 -39.53451 -37.63724 -35.96596 -32.91102 -31.96971 -31.95421 -29.90596 -29.62941 -28.49848 -28.47157 -27.84346 -25.91775 -24.17285 -23.53985 -22.15718 -21.76813 -20.27123 -19.51966 -18.00901 -17.88288 -17.15304 -16.95081 -16.66822 -16.09557 -15.90308 -15.87787 -15.72230 -15.22316 -14.94141 -14.61952 -14.44035 -14.36017 -14.31978 -14.15985 -14.09440 -13.94730 -13.65765 -13.62504 -13.49121 -13.31165 -13.28989 -13.19524 -13.15876 -13.04713 -12.76307 -12.48070 -12.42342 -12.22727 -12.02526 -11.79157 -11.25403 -11.05177 -10.96280 -10.89034 -10.80835 -10.24180 -9.86373 -9.74242 -9.71978 -9.48857 -0.66081 0.11355 0.26900 0.46209 0.67471 0.92753 1.22563 1.26267 1.43417 1.64058 1.78839 1.79307 1.83180 2.14760 2.17284 2.48261 2.90389 3.23294 3.50164 3.57936 3.77106 3.84783 4.05518 4.07400 4.16637 4.32528 4.40833 4.43783 4.43886 4.61526 4.63248 4.64654 4.65737 4.66249 4.69780 4.70279 4.70988 4.72815 4.80640 4.93782 4.95821 5.09025 5.23401 5.24470 5.32919 5.35313 5.40160 5.44769 5.48071 5.55639 5.57026 6.03847 6.29074 6.34058 7.07818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.093 4.093 3 C -0.233 4.233 4 C -0.047 4.047 5 O -0.531 6.531 6 Si 0.920 3.080 7 H -0.241 1.241 8 H -0.235 1.235 9 H -0.237 1.237 10 S 0.185 5.815 11 C -0.257 4.257 12 C 0.592 3.408 13 O -0.524 6.524 14 N -0.723 5.723 15 C 0.161 3.839 16 C -0.104 4.104 17 C -0.111 4.111 18 C -0.090 4.090 19 C -0.362 4.362 20 Si 1.060 2.940 21 C -0.449 4.449 22 C -0.450 4.450 23 C -0.450 4.450 24 C -0.090 4.090 25 C -0.111 4.111 26 C -0.044 4.044 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.375 0.625 32 H 0.400 0.600 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 3.727 -0.797 4.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.352 4.352 4 C -0.160 4.160 5 O -0.336 6.336 6 Si 0.739 3.261 7 H -0.164 1.164 8 H -0.158 1.158 9 H -0.160 1.160 10 S 0.454 5.546 11 C -0.377 4.377 12 C 0.378 3.622 13 O -0.402 6.402 14 N -0.375 5.375 15 C 0.039 3.961 16 C -0.105 4.105 17 C -0.130 4.130 18 C -0.108 4.108 19 C -0.404 4.404 20 Si 1.251 2.749 21 C -0.557 4.557 22 C -0.558 4.558 23 C -0.558 4.558 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.078 4.078 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.222 0.778 32 H 0.234 0.766 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.439 4.241 -1.440 5.647 hybrid contribution -0.939 -0.911 0.337 1.351 sum 2.499 3.330 -1.104 4.308 Atomic orbital electron populations 1.20635 0.88886 1.03682 1.02863 1.18695 0.98237 0.90716 1.02935 1.24448 0.98462 1.00998 1.11276 1.24586 1.05582 0.89605 0.96179 1.86584 1.29470 1.79448 1.38055 0.86095 0.81300 0.81094 0.77595 1.16352 1.15783 1.16030 1.82895 1.03429 0.98985 1.69261 1.24459 0.97998 0.96484 1.18739 1.16924 0.81476 0.87427 0.76350 1.90867 1.81560 1.18076 1.49651 1.45934 1.05130 1.10381 1.76061 1.20265 0.82799 0.89367 1.03678 1.19842 0.95739 1.00937 0.93941 1.21193 0.95690 0.98779 0.97310 1.21099 0.94430 0.97038 0.98224 1.27470 1.14484 1.04228 0.94175 0.78180 0.62874 0.66473 0.67326 1.26124 1.04686 1.20246 1.04601 1.26142 1.08598 1.06016 1.15034 1.26142 1.08590 1.06030 1.15031 1.21102 0.94451 0.97001 0.98220 1.21195 0.95696 0.98732 0.97320 1.20728 0.90844 1.00149 0.96052 0.90612 0.90814 0.90699 0.85187 0.77823 0.76589 0.90138 0.90122 0.86083 0.85928 0.91164 0.90997 0.91177 0.91035 0.90925 0.91169 0.91179 0.90924 0.91037 0.85911 0.86061 0.82477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.13 9.48 36.01 0.34 0.47 16 2 C -0.09 -0.06 5.78 -106.45 -0.62 -0.68 16 3 C -0.23 -0.04 4.83 -35.86 -0.17 -0.21 16 4 C -0.05 0.04 2.77 36.01 0.10 0.14 16 5 O -0.53 0.13 12.88 -35.23 -0.45 -0.32 16 6 Si 0.92 -1.01 27.41 -169.99 -4.66 -5.67 16 7 H -0.24 0.03 7.11 56.52 0.40 0.43 16 8 H -0.24 0.04 7.11 56.52 0.40 0.44 16 9 H -0.24 0.31 7.11 56.52 0.40 0.71 16 10 S 0.19 -0.06 20.83 -107.50 -2.24 -2.30 16 11 C -0.26 -0.51 6.45 -36.79 -0.24 -0.75 16 12 C 0.59 2.00 7.78 -12.90 -0.10 1.90 16 13 O -0.52 -3.58 16.84 5.19 0.09 -3.49 16 14 N -0.72 -0.69 5.54 -62.83 -0.35 -1.04 16 15 C 0.16 0.12 5.80 -5.19 -0.03 0.09 16 16 C -0.10 -0.02 5.25 -104.62 -0.55 -0.56 16 17 C -0.11 0.01 9.70 -39.58 -0.38 -0.37 16 18 C -0.09 0.06 9.29 -39.58 -0.37 -0.31 16 19 C -0.36 0.40 4.59 -39.58 -0.18 0.22 16 20 Si 1.06 -3.35 12.32 -169.99 -2.09 -5.44 16 21 C -0.45 0.98 8.65 101.05 0.87 1.85 16 22 C -0.45 1.02 8.53 101.05 0.86 1.89 16 23 C -0.45 1.02 8.53 101.05 0.86 1.88 16 24 C -0.09 0.06 9.29 -39.58 -0.37 -0.31 16 25 C -0.11 0.01 9.70 -39.58 -0.38 -0.37 16 26 C -0.04 -0.08 9.78 -40.43 -0.40 -0.47 16 27 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.07 -0.12 8.10 -51.93 -0.42 -0.54 16 29 H 0.07 -0.12 7.00 -51.93 -0.36 -0.48 16 30 H 0.13 -0.26 6.25 -51.93 -0.32 -0.58 16 31 H 0.37 -1.23 8.70 45.56 0.40 -0.83 16 32 H 0.40 -0.27 7.58 -40.82 -0.31 -0.58 16 33 H 0.08 0.09 8.09 -51.93 -0.42 -0.33 16 34 H 0.08 0.09 8.09 -51.93 -0.42 -0.33 16 35 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 36 H 0.12 -0.29 7.43 -52.49 -0.39 -0.68 16 37 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 39 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 42 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 43 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 44 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 45 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 46 H 0.12 -0.29 7.43 -52.49 -0.39 -0.68 16 47 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 48 H 0.16 0.23 8.06 -52.49 -0.42 -0.20 16 LS Contribution 415.44 15.07 6.26 6.26 Total: 0.00 -7.00 415.44 -11.02 -18.02 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: -6.82 Total: -10.41 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.75 Total: 4.39 kcal Atomic # 7 Polarization: -0.69 SS G_CDS: -0.35 Total: -1.04 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.37 Total: -3.81 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: -6.75 Total: -11.11 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.24 Total: -2.30 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -7.00 -11.02 -18.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_6739946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.423 kcal (2) G-P(sol) polarization free energy of solvation -7.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds