Wall clock time and date at job start Sat Mar 6 2021 17:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33817 * 122.44755 * 2 1 4 4 C 1.50700 * 124.52386 * 359.95187 * 3 2 1 5 5 O 1.42901 * 109.47273 * 113.32965 * 4 3 2 6 6 Si 1.86298 * 109.47410 * 233.33082 * 4 3 2 7 7 H 1.48505 * 109.47285 * 59.99700 * 6 4 3 8 8 H 1.48494 * 109.47386 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46998 * 299.99977 * 6 4 3 10 10 S 1.70612 * 110.95478 * 179.97438 * 3 2 1 11 11 C 1.75830 * 91.56459 * 359.97438 * 10 3 2 12 12 C 1.46585 * 125.46253 * 179.97438 * 11 10 3 13 13 O 1.21698 * 120.00407 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99633 * 0.03127 * 12 11 10 15 15 C 1.46503 * 119.99958 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47093 * 179.97438 * 15 14 12 17 17 C 1.38238 * 120.00269 * 270.27948 * 16 15 14 18 18 C 1.38235 * 119.99921 * 180.23714 * 17 16 15 19 19 C 1.38234 * 120.00118 * 359.48151 * 18 17 16 20 20 Si 1.86796 * 119.99997 * 180.27897 * 19 18 17 21 21 C 1.86299 * 109.46947 * 90.00619 * 20 19 18 22 22 C 1.86301 * 109.47046 * 210.00375 * 20 19 18 23 23 C 1.86298 * 109.47247 * 330.00472 * 20 19 18 24 24 C 1.38232 * 119.99803 * 0.26634 * 19 18 17 25 25 C 1.38233 * 119.99933 * 90.00286 * 16 15 14 26 26 C 1.36656 * 109.08181 * 0.26474 * 11 10 3 27 27 H 1.09001 * 109.47030 * 84.89973 * 1 2 3 28 28 H 1.08997 * 109.47058 * 204.89602 * 1 2 3 29 29 H 1.08997 * 109.47252 * 324.89879 * 1 2 3 30 30 H 1.09000 * 109.47250 * 353.33186 * 4 3 2 31 31 H 0.96697 * 114.00018 * 59.99790 * 5 4 3 32 32 H 0.97007 * 120.00450 * 359.97438 * 14 12 11 33 33 H 1.09002 * 109.47132 * 60.00071 * 15 14 12 34 34 H 1.08996 * 109.47254 * 299.99498 * 15 14 12 35 35 H 1.07997 * 120.00030 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.99753 * 179.76841 * 18 17 16 37 37 H 1.08997 * 109.47167 * 59.99778 * 21 20 19 38 38 H 1.09002 * 109.46944 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47471 * 299.99596 * 21 20 19 40 40 H 1.09000 * 109.47263 * 60.00540 * 22 20 19 41 41 H 1.09002 * 109.47206 * 180.02562 * 22 20 19 42 42 H 1.08999 * 109.47570 * 299.99942 * 22 20 19 43 43 H 1.09001 * 109.47095 * 60.00450 * 23 20 19 44 44 H 1.09002 * 109.47091 * 180.02562 * 23 20 19 45 45 H 1.09000 * 109.47351 * 299.99637 * 23 20 19 46 46 H 1.08001 * 119.99913 * 180.02562 * 24 19 18 47 47 H 1.07998 * 119.99960 * 0.02562 * 25 16 15 48 48 H 1.08000 * 123.35203 * 179.73717 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5162 -0.0010 5 8 1.9393 3.1639 1.2360 6 14 2.3588 3.4974 -1.4098 7 1 2.0432 2.8244 -2.6954 8 1 1.7784 4.8642 -1.4104 9 1 3.8321 3.5860 -1.2462 10 16 3.8969 0.7893 0.0007 11 6 3.5938 -0.9426 0.0018 12 6 4.6232 -1.9862 0.0023 13 8 4.3003 -3.1596 0.0026 14 7 5.9273 -1.6462 0.0025 15 6 6.9562 -2.6891 0.0035 16 6 8.3204 -2.0488 0.0030 17 6 8.9437 -1.7510 -1.1944 18 6 10.1972 -1.1682 -1.1949 19 6 10.8228 -0.8734 0.0020 20 14 12.5133 -0.0787 0.0013 21 6 12.3280 1.7751 0.0003 22 6 13.4491 -0.6084 1.5226 23 6 13.4488 -0.6102 -1.5196 24 6 10.1973 -1.1664 1.1993 25 6 8.9461 -1.7541 1.1998 26 6 2.2446 -1.1600 -0.0044 27 1 -0.3633 0.0914 -1.0236 28 1 -0.3633 -0.9321 0.4326 29 1 -0.3633 0.8407 0.5909 30 1 0.5541 2.4512 -0.1211 31 1 2.8861 3.2564 1.4094 32 1 6.1848 -0.7109 0.0020 33 1 6.8459 -3.3092 -0.8861 34 1 6.8454 -3.3080 0.8939 35 1 8.4532 -1.9776 -2.1295 36 1 10.6858 -0.9390 -2.1304 37 1 11.7807 2.0860 0.8901 38 1 13.3145 2.2388 0.0003 39 1 11.7805 2.0851 -0.8898 40 1 13.5576 -1.6930 1.5233 41 1 14.4354 -0.1443 1.5225 42 1 12.9019 -0.2975 2.4125 43 1 12.9013 -0.3002 -2.4097 44 1 14.4354 -0.1468 -1.5198 45 1 13.5572 -1.6947 -1.5190 46 1 10.6859 -0.9357 2.1345 47 1 8.4574 -1.9830 2.1353 48 1 1.8019 -2.1451 -0.0092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10854838_6739946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:10:04 Heat of formation + Delta-G solvation = -61.023752 kcal Electronic energy + Delta-G solvation = -26697.650494 eV Core-core repulsion = 22967.078978 eV Total energy + Delta-G solvation = -3730.571516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.124 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.16292 -40.10925 -39.58525 -37.60866 -36.13988 -32.97900 -31.96708 -31.87874 -29.84767 -29.43176 -28.28984 -28.26137 -27.88118 -25.92287 -24.21057 -23.47019 -22.14017 -21.92253 -20.28733 -19.59084 -18.02615 -17.87439 -17.14440 -17.05832 -16.78159 -16.07337 -15.90691 -15.84844 -15.75498 -15.30455 -14.92155 -14.61783 -14.36056 -14.34375 -14.17890 -13.99052 -13.94252 -13.85072 -13.65618 -13.52367 -13.43955 -13.19521 -13.11254 -13.10777 -13.02429 -12.95934 -12.69679 -12.45397 -12.37711 -12.21076 -11.94013 -11.76578 -11.49153 -10.90467 -10.77285 -10.76952 -10.75336 -10.43357 -9.81247 -9.76407 -9.68265 -9.48574 -0.75304 0.16314 0.22942 0.51644 0.63989 0.96674 1.19130 1.34654 1.48522 1.84475 1.85810 1.91193 1.97948 2.02769 2.17911 2.67243 2.95539 3.34628 3.52697 3.57239 3.70180 3.87916 4.04529 4.14212 4.20933 4.31345 4.43107 4.50324 4.53563 4.55191 4.73508 4.75472 4.81949 4.85344 4.85576 4.89498 4.89883 4.90087 4.91409 4.97005 4.99254 5.09547 5.16860 5.27088 5.36833 5.39621 5.57795 5.60159 5.60815 5.68953 5.71445 6.11623 6.20881 6.50518 6.88268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.104 4.104 3 C -0.235 4.235 4 C -0.046 4.046 5 O -0.543 6.543 6 Si 0.945 3.055 7 H -0.255 1.255 8 H -0.247 1.247 9 H -0.232 1.232 10 S 0.226 5.774 11 C -0.282 4.282 12 C 0.590 3.410 13 O -0.568 6.568 14 N -0.711 5.711 15 C 0.164 3.836 16 C -0.110 4.110 17 C -0.122 4.122 18 C -0.100 4.100 19 C -0.372 4.372 20 Si 1.129 2.871 21 C -0.462 4.462 22 C -0.464 4.464 23 C -0.464 4.464 24 C -0.099 4.099 25 C -0.122 4.122 26 C -0.052 4.052 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.387 0.613 32 H 0.408 0.592 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.139 0.861 47 H 0.126 0.874 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 5.147 -0.762 6.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C -0.355 4.355 4 C -0.158 4.158 5 O -0.350 6.350 6 Si 0.764 3.236 7 H -0.178 1.178 8 H -0.171 1.171 9 H -0.154 1.154 10 S 0.495 5.505 11 C -0.402 4.402 12 C 0.377 3.623 13 O -0.449 6.449 14 N -0.362 5.362 15 C 0.041 3.959 16 C -0.111 4.111 17 C -0.141 4.141 18 C -0.117 4.117 19 C -0.411 4.411 20 Si 1.316 2.684 21 C -0.569 4.569 22 C -0.571 4.571 23 C -0.571 4.571 24 C -0.117 4.117 25 C -0.140 4.140 26 C -0.086 4.086 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.158 0.842 31 H 0.236 0.764 32 H 0.244 0.756 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.157 0.843 47 H 0.144 0.856 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.133 5.686 -1.397 7.167 hybrid contribution -1.115 -1.302 0.324 1.744 sum 3.018 4.384 -1.072 5.429 Atomic orbital electron populations 1.20692 0.87668 1.04049 1.03690 1.18856 0.99245 0.90356 1.03168 1.24731 0.98853 1.01502 1.10386 1.24674 1.06323 0.88746 0.96088 1.86561 1.30838 1.79376 1.38223 0.85757 0.81346 0.79921 0.76536 1.17836 1.17061 1.15434 1.82657 1.02923 0.96619 1.68259 1.24447 0.97831 0.97778 1.20124 1.17168 0.82239 0.87168 0.75684 1.90832 1.82277 1.19824 1.51979 1.45880 1.04541 1.10975 1.74834 1.20225 0.83247 0.89306 1.03074 1.19781 0.95341 1.01576 0.94390 1.21358 0.96218 0.99048 0.97433 1.21383 0.94299 0.96844 0.99219 1.27994 1.15542 1.03725 0.93857 0.77134 0.60661 0.64793 0.65852 1.26277 1.04789 1.21284 1.04505 1.26307 1.09022 1.05869 1.15922 1.26308 1.09014 1.05884 1.15919 1.21384 0.94317 0.96802 0.99214 1.21359 0.96223 0.99006 0.97438 1.20845 0.91084 1.00528 0.96159 0.89556 0.90658 0.90100 0.84172 0.76413 0.75552 0.90743 0.90750 0.85588 0.84345 0.91269 0.90796 0.91292 0.91398 0.90776 0.90877 0.90890 0.90774 0.91400 0.84324 0.85578 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.27 9.48 71.24 0.68 0.94 16 2 C -0.10 -0.16 5.78 -21.05 -0.12 -0.28 16 3 C -0.24 0.01 4.83 24.68 0.12 0.13 16 4 C -0.05 0.12 2.77 71.24 0.20 0.32 16 5 O -0.54 0.80 12.88 -148.98 -1.92 -1.12 16 6 Si 0.94 -2.70 27.41 68.60 1.88 -0.82 16 7 H -0.25 0.12 7.11 99.48 0.71 0.83 16 8 H -0.25 0.19 7.11 99.48 0.71 0.89 16 9 H -0.23 0.91 7.11 99.48 0.71 1.62 16 10 S 0.23 -0.19 20.83 -56.49 -1.18 -1.36 16 11 C -0.28 -1.43 6.45 24.08 0.16 -1.27 16 12 C 0.59 5.00 7.78 86.42 0.67 5.67 16 13 O -0.57 -9.17 16.84 -4.34 -0.07 -9.25 16 14 N -0.71 -2.21 5.54 -470.91 -2.61 -4.82 16 15 C 0.16 0.48 5.80 85.63 0.50 0.98 16 16 C -0.11 -0.12 5.25 -19.87 -0.10 -0.22 16 17 C -0.12 -0.02 9.70 22.27 0.22 0.19 16 18 C -0.10 0.16 9.29 22.27 0.21 0.37 16 19 C -0.37 1.01 4.59 22.27 0.10 1.12 16 20 Si 1.13 -8.09 12.32 68.60 0.85 -7.24 16 21 C -0.46 2.42 8.65 113.37 0.98 3.40 16 22 C -0.46 2.45 8.53 113.37 0.97 3.41 16 23 C -0.46 2.44 8.53 113.37 0.97 3.41 16 24 C -0.10 0.16 9.29 22.27 0.21 0.37 16 25 C -0.12 -0.02 9.70 22.27 0.22 0.19 16 26 C -0.05 -0.25 9.78 21.72 0.21 -0.04 16 27 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.07 -0.22 8.10 -2.39 -0.02 -0.24 16 29 H 0.08 -0.31 7.00 -2.39 -0.02 -0.32 16 30 H 0.14 -0.69 6.25 -2.39 -0.01 -0.70 16 31 H 0.39 -2.97 8.70 -74.06 -0.64 -3.61 16 32 H 0.41 -0.33 7.58 -92.70 -0.70 -1.03 16 33 H 0.07 0.31 8.09 -2.39 -0.02 0.29 16 34 H 0.07 0.31 8.09 -2.39 -0.02 0.29 16 35 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 36 H 0.14 -0.75 7.43 -2.91 -0.02 -0.77 16 37 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 38 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 39 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 40 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 42 H 0.07 -0.42 7.69 -2.39 -0.02 -0.44 16 43 H 0.07 -0.42 7.69 -2.39 -0.02 -0.44 16 44 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 45 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 46 H 0.14 -0.76 7.43 -2.91 -0.02 -0.78 16 47 H 0.13 -0.19 8.06 -2.91 -0.02 -0.22 16 48 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 Total: 0.00 -16.52 415.44 3.49 -13.03 By element: Atomic # 1 Polarization: -7.48 SS G_CDS: 0.38 Total: -7.10 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.17 Total: 18.69 kcal Atomic # 7 Polarization: -2.21 SS G_CDS: -2.61 Total: -4.82 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.99 Total: -10.37 kcal Atomic # 14 Polarization: -10.79 SS G_CDS: 2.73 Total: -8.06 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -1.18 Total: -1.36 kcal Total: -16.52 3.49 -13.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10854838_6739946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.998 kcal (2) G-P(sol) polarization free energy of solvation -16.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds