Wall clock time and date at job start Sat Mar 6 2021 13:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47101 * 2 1 4 4 C 1.50702 * 109.47376 * 120.00028 * 2 1 3 5 5 C 1.34448 * 126.47997 * 255.02846 * 4 2 1 6 6 N 1.36565 * 109.98145 * 179.97438 * 5 4 2 7 7 C 1.37823 * 109.86473 * 359.97438 * 6 5 4 8 8 C 1.38650 * 133.38443 * 179.97438 * 7 6 5 9 9 C 1.39314 * 119.67092 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.83450 * 180.02562 * 9 8 7 11 11 O 1.21589 * 119.99894 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00051 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99986 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84731 * 334.66472 * 13 12 10 15 15 C 1.53780 * 113.61452 * 105.86370 * 13 12 10 16 16 C 1.54050 * 86.98526 * 89.16022 * 15 13 12 17 17 H 1.08995 * 113.68895 * 270.87054 * 16 15 13 18 18 C 1.50698 * 113.61771 * 139.97670 * 16 15 13 19 19 C 1.38247 * 119.97422 * 322.50527 * 18 16 15 20 20 C 1.38287 * 120.11442 * 179.97438 * 19 18 16 21 21 C 1.38130 * 120.05463 * 359.97438 * 20 19 18 22 22 C 1.38758 * 119.94215 * 0.02562 * 21 20 19 23 23 O 1.35900 * 120.05295 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99887 * 0.02562 * 23 22 21 25 25 F 1.39890 * 109.47288 * 59.99850 * 24 23 22 26 26 F 1.39903 * 109.46976 * 180.02562 * 24 23 22 27 27 F 1.39899 * 109.47019 * 299.99520 * 24 23 22 28 28 C 1.38165 * 119.97314 * 142.22792 * 18 16 15 29 29 C 1.53780 * 87.07820 * 25.42938 * 16 15 13 30 30 C 1.40202 * 120.33295 * 359.97438 * 9 8 7 31 31 C 1.36231 * 120.38088 * 359.97438 * 30 9 8 32 32 C 1.39876 * 119.96018 * 0.02562 * 31 30 9 33 33 H 0.96691 * 114.00039 * 299.99906 * 1 2 3 34 34 H 1.08997 * 109.47214 * 240.00255 * 2 1 3 35 35 H 1.48508 * 109.99894 * 300.00165 * 3 2 1 36 36 H 1.48497 * 109.99818 * 61.31767 * 3 2 1 37 37 H 1.07998 * 125.01304 * 359.95841 * 5 4 2 38 38 H 0.97003 * 125.06863 * 179.73396 * 6 5 4 39 39 H 1.08003 * 120.15970 * 0.03790 * 8 7 6 40 40 H 0.97002 * 119.99951 * 0.02562 * 12 10 9 41 41 H 1.09001 * 113.61236 * 203.66537 * 15 13 12 42 42 H 1.08993 * 113.61580 * 334.56531 * 15 13 12 43 43 H 1.08003 * 119.94155 * 359.97438 * 19 18 16 44 44 H 1.07994 * 119.97374 * 180.02562 * 20 19 18 45 45 H 1.07991 * 120.02809 * 180.02562 * 21 20 19 46 46 H 1.08001 * 120.02901 * 0.02562 * 28 18 16 47 47 H 1.09003 * 113.61715 * 220.02316 * 29 16 15 48 48 H 1.09000 * 113.68958 * 89.12806 * 29 16 15 49 49 H 1.07997 * 119.80943 * 180.02562 * 30 9 8 50 50 H 1.07999 * 120.02236 * 179.97438 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4612 -0.1362 2.3247 6 7 2.8027 -1.0946 3.2356 7 6 2.4937 -2.3430 2.7401 8 6 2.6302 -3.6279 3.2431 9 6 2.2125 -4.7155 2.4792 10 6 2.3555 -6.0845 3.0113 11 8 2.8374 -6.2611 4.1136 12 7 1.9521 -7.1391 2.2754 13 6 2.0936 -8.4982 2.8038 14 1 2.8904 -8.5842 3.5426 15 6 0.7640 -9.1249 3.2558 16 6 0.6122 -9.6443 1.8135 17 1 0.1019 -8.9475 1.1486 18 6 0.0592 -11.0436 1.7307 19 6 0.4324 -11.9903 2.6666 20 6 -0.0737 -13.2751 2.5938 21 6 -0.9543 -13.6157 1.5855 22 6 -1.3304 -12.6674 0.6449 23 8 -2.1970 -12.9998 -0.3477 24 6 -2.6821 -14.3439 -0.3622 25 9 -3.3600 -14.6080 0.8326 26 9 -3.5558 -14.5127 -1.4418 27 9 -1.6049 -15.2270 -0.4923 28 6 -0.8249 -11.3780 0.7230 29 6 2.1454 -9.5809 1.7130 30 6 1.6560 -4.5158 1.2080 31 6 1.5173 -3.2568 0.7065 32 6 1.9319 -2.1546 1.4614 33 1 -0.3933 0.4416 0.7650 34 1 1.7923 -0.5138 -0.8900 35 1 1.5614 2.4679 -1.2085 36 1 1.5878 2.4585 1.2242 37 1 2.5969 0.9262 2.4628 38 1 3.2062 -0.9226 4.1008 39 1 3.0580 -3.7846 4.2223 40 1 1.5681 -6.9983 1.3958 41 1 0.8837 -9.9171 3.9948 42 1 0.0094 -8.3912 3.5389 43 1 1.1205 -11.7258 3.4560 44 1 0.2191 -14.0127 3.3263 45 1 -1.3496 -14.6190 1.5292 46 1 -1.1194 -10.6371 -0.0055 47 1 2.5053 -9.2150 0.7513 48 1 2.6434 -10.4970 2.0305 49 1 1.3346 -5.3650 0.6232 50 1 1.0882 -3.1097 -0.2736 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10860230_12335838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:50:25 Heat of formation + Delta-G solvation = -136.681091 kcal Electronic energy + Delta-G solvation = -40091.797462 eV Core-core repulsion = 34216.313603 eV Total energy + Delta-G solvation = -5875.483859 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.133 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -51.54712 -49.26465 -49.14469 -42.45835 -41.75374 -41.06431 -39.88474 -38.25489 -37.90197 -37.46604 -34.60288 -33.25077 -32.26085 -31.33792 -30.71105 -30.37418 -27.27022 -26.68341 -26.57795 -26.22005 -24.67087 -23.88853 -23.62254 -22.95462 -21.63425 -21.01199 -20.78402 -20.26456 -20.12828 -19.67575 -19.43125 -18.44410 -17.92001 -17.61482 -17.19816 -17.09553 -16.95505 -16.46834 -16.35880 -16.24166 -16.09300 -15.92446 -15.80433 -15.71506 -15.62135 -15.60883 -15.54840 -15.27239 -15.25647 -15.09890 -15.03456 -14.76671 -14.73505 -14.53474 -14.36529 -14.17263 -13.89915 -13.88508 -13.46505 -13.05499 -12.95109 -12.80250 -12.68749 -12.60946 -12.48701 -12.19389 -11.82260 -11.76500 -11.69955 -11.27353 -11.11229 -10.77392 -10.44357 -10.13263 -9.91735 -9.57432 -9.34899 -8.78549 -4.83017 -0.30839 0.10433 0.23158 0.37742 0.39342 1.39714 1.40943 1.64811 1.73434 1.89674 1.91083 2.05572 2.25901 2.49971 2.66968 2.88238 2.89506 3.44168 3.56677 3.58406 3.60548 3.61360 3.70340 3.74714 3.87384 3.90033 3.92485 3.94702 4.06202 4.13675 4.20212 4.28875 4.32097 4.42308 4.50258 4.54189 4.61312 4.67244 4.79970 4.81226 4.87151 4.89843 4.97704 4.99251 5.00969 5.05336 5.15702 5.23653 5.27079 5.36209 5.43378 5.46985 5.53591 5.63178 5.65281 5.89076 5.99768 6.47989 6.52881 6.62884 7.15617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.048 4.048 3 Si 0.772 3.228 4 C -0.225 4.225 5 C 0.090 3.910 6 N -0.577 5.577 7 C 0.067 3.933 8 C -0.067 4.067 9 C -0.136 4.136 10 C 0.565 3.435 11 O -0.580 6.580 12 N -0.695 5.695 13 C 0.114 3.886 14 H 0.089 0.911 15 C -0.141 4.141 16 C -0.067 4.067 17 H 0.114 0.886 18 C -0.033 4.033 19 C -0.133 4.133 20 C -0.079 4.079 21 C -0.208 4.208 22 C 0.084 3.916 23 O -0.320 6.320 24 C 0.608 3.392 25 F -0.166 7.166 26 F -0.133 7.133 27 F -0.165 7.165 28 C -0.128 4.128 29 C -0.122 4.122 30 C -0.107 4.107 31 C -0.084 4.084 32 C -0.080 4.080 33 H 0.383 0.617 34 H 0.114 0.886 35 H -0.309 1.309 36 H -0.269 1.269 37 H 0.206 0.794 38 H 0.434 0.566 39 H 0.128 0.872 40 H 0.415 0.585 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.131 0.869 46 H 0.148 0.852 47 H 0.090 0.910 48 H 0.107 0.893 49 H 0.153 0.847 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 3.547 0.015 5.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.157 4.157 3 Si 0.676 3.324 4 C -0.232 4.232 5 C -0.040 4.040 6 N -0.180 5.180 7 C -0.040 4.040 8 C -0.088 4.088 9 C -0.141 4.141 10 C 0.354 3.646 11 O -0.461 6.461 12 N -0.347 5.347 13 C 0.008 3.992 14 H 0.108 0.892 15 C -0.180 4.180 16 C -0.086 4.086 17 H 0.132 0.868 18 C -0.034 4.034 19 C -0.151 4.151 20 C -0.097 4.097 21 C -0.226 4.226 22 C 0.042 3.958 23 O -0.240 6.240 24 C 0.517 3.483 25 F -0.148 7.148 26 F -0.114 7.114 27 F -0.147 7.147 28 C -0.146 4.146 29 C -0.160 4.160 30 C -0.126 4.126 31 C -0.102 4.102 32 C -0.085 4.085 33 H 0.232 0.768 34 H 0.132 0.868 35 H -0.237 1.237 36 H -0.195 1.195 37 H 0.223 0.777 38 H 0.274 0.726 39 H 0.146 0.854 40 H 0.253 0.747 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.149 0.851 46 H 0.166 0.834 47 H 0.108 0.892 48 H 0.126 0.874 49 H 0.170 0.830 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.918 4.020 0.224 5.618 hybrid contribution -1.536 -0.670 0.492 1.746 sum 2.382 3.350 0.716 4.172 Atomic orbital electron populations 1.86572 1.19188 1.80459 1.49923 1.24552 0.82685 1.11273 0.97167 0.94175 0.89998 0.71217 0.76975 1.20755 1.11954 0.91560 0.98963 1.22280 0.97744 0.95581 0.88373 1.41802 1.54050 1.03319 1.18853 1.18131 1.03839 0.86802 0.95203 1.20133 0.99828 0.88788 1.00060 1.19459 1.06142 0.91757 0.96697 1.18339 0.76729 0.85352 0.84171 1.90767 1.46656 1.86730 1.21988 1.45473 1.63141 1.04944 1.21094 1.21894 0.98693 0.80814 0.97761 0.89240 1.23628 0.97280 1.00627 0.96436 1.21700 0.96459 0.92002 0.98405 0.86787 1.19670 0.94439 0.96116 0.93138 1.21380 1.01227 0.92599 0.99868 1.21249 0.94372 0.97381 0.96692 1.21683 1.03612 0.99462 0.97863 1.18959 0.92500 0.95939 0.88380 1.86400 1.60587 1.26075 1.50957 1.19269 0.75785 0.78516 0.74715 1.93302 1.80762 1.93744 1.46965 1.93319 1.68610 1.94464 1.55018 1.93304 1.56012 1.69843 1.95549 1.20524 0.99609 0.93152 1.01361 1.23387 0.94482 0.98679 0.99449 1.20903 0.99558 0.98120 0.94052 1.20411 0.98987 0.90667 1.00150 1.19547 1.00965 0.94145 0.93846 0.76766 0.86819 1.23701 1.19486 0.77706 0.72579 0.85370 0.74670 0.87807 0.91449 0.83123 0.83039 0.85101 0.83435 0.89150 0.87425 0.82975 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.03 12.88 -148.98 -1.92 -2.95 16 2 C -0.05 0.09 3.06 71.24 0.22 0.31 16 3 Si 0.77 -3.83 30.82 68.60 2.11 -1.72 16 4 C -0.22 0.25 5.57 -18.64 -0.10 0.15 16 5 C 0.09 -0.47 10.43 83.09 0.87 0.40 16 6 N -0.58 2.12 6.07 -187.72 -1.14 0.98 16 7 C 0.07 0.15 7.26 38.96 0.28 0.44 16 8 C -0.07 -0.30 9.61 22.63 0.22 -0.08 16 9 C -0.14 -0.49 5.87 -20.08 -0.12 -0.60 16 10 C 0.56 3.06 7.76 86.71 0.67 3.73 16 11 O -0.58 -7.80 15.93 -4.00 -0.06 -7.87 16 12 N -0.69 1.26 5.21 -443.15 -2.31 -1.05 16 13 C 0.11 -0.30 4.30 45.52 0.20 -0.10 16 14 H 0.09 0.14 7.50 -2.39 -0.02 0.12 16 15 C -0.14 0.56 7.27 31.21 0.23 0.78 16 16 C -0.07 0.42 3.87 -10.92 -0.04 0.38 16 17 H 0.11 -0.96 8.09 -2.39 -0.02 -0.98 16 18 C -0.03 0.10 5.29 -19.88 -0.11 -0.01 16 19 C -0.13 0.45 8.61 22.28 0.19 0.64 16 20 C -0.08 0.13 10.04 22.26 0.22 0.36 16 21 C -0.21 -0.38 8.26 22.37 0.18 -0.19 16 22 C 0.08 0.27 6.48 22.51 0.15 0.41 16 23 O -0.32 -1.49 10.37 -92.42 -0.96 -2.45 16 24 C 0.61 2.07 3.42 113.37 0.39 2.46 16 25 F -0.17 -0.59 15.56 44.97 0.70 0.11 16 26 F -0.13 -0.50 17.53 44.97 0.79 0.29 16 27 F -0.17 -0.55 15.56 44.97 0.70 0.15 16 28 C -0.13 0.01 9.65 22.37 0.22 0.23 16 29 C -0.12 0.86 7.28 31.12 0.23 1.08 16 30 C -0.11 0.08 9.46 22.28 0.21 0.29 16 31 C -0.08 -0.09 10.03 22.20 0.22 0.14 16 32 C -0.08 -0.21 6.35 -20.14 -0.13 -0.34 16 33 H 0.38 -1.47 8.70 -74.06 -0.64 -2.12 16 34 H 0.11 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H -0.31 -1.24 7.11 99.48 0.71 -0.53 16 36 H -0.27 0.93 7.00 99.48 0.70 1.63 16 37 H 0.21 -2.44 6.27 -2.91 -0.02 -2.46 16 38 H 0.43 -3.93 8.96 -92.71 -0.83 -4.76 16 39 H 0.13 0.65 7.62 -2.91 -0.02 0.62 16 40 H 0.41 -3.10 6.69 -92.71 -0.62 -3.72 16 41 H 0.10 -0.54 6.31 -2.39 -0.02 -0.55 16 42 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.15 -1.12 6.65 -2.91 -0.02 -1.14 16 44 H 0.15 -0.89 8.06 -2.91 -0.02 -0.92 16 45 H 0.13 0.18 5.10 -2.92 -0.01 0.17 16 46 H 0.15 -0.44 8.05 -2.91 -0.02 -0.46 16 47 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 48 H 0.11 -0.84 7.73 -2.39 -0.02 -0.86 16 49 H 0.15 -1.14 6.36 -2.91 -0.02 -1.16 16 50 H 0.14 -0.18 8.06 -2.91 -0.02 -0.21 16 Total: 0.00 -23.64 428.32 1.12 -22.51 By element: Atomic # 1 Polarization: -17.51 SS G_CDS: -0.99 Total: -18.49 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 4.19 Total: 10.48 kcal Atomic # 7 Polarization: 3.38 SS G_CDS: -3.45 Total: -0.07 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -2.94 Total: -13.26 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 2.19 Total: 0.54 kcal Atomic # 14 Polarization: -3.83 SS G_CDS: 2.11 Total: -1.72 kcal Total: -23.64 1.12 -22.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10860230_12335838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.167 kcal (2) G-P(sol) polarization free energy of solvation -23.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds