Wall clock time and date at job start Sat Mar 6 2021 13:54:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42898 * 1
3 3 Si 1.86303 * 109.46899 * 2 1
4 4 C 1.50697 * 109.47498 * 120.00031 * 2 1 3
5 5 C 1.38270 * 119.93929 * 64.99941 * 4 2 1
6 6 C 1.38150 * 120.05129 * 180.02562 * 5 4 2
7 7 C 1.38722 * 119.94470 * 0.02562 * 6 5 4
8 8 O 1.35902 * 120.05628 * 180.02562 * 7 6 5
9 9 C 1.42905 * 117.00094 * 179.97438 * 8 7 6
10 10 C 1.52995 * 109.47001 * 180.02562 * 9 8 7
11 11 C 1.50700 * 109.47303 * 180.02562 * 10 9 8
12 12 O 1.21284 * 119.99677 * 359.97438 * 11 10 9
13 13 N 1.34772 * 120.00188 * 179.97438 * 11 10 9
14 14 C 1.46503 * 120.00027 * 179.97438 * 13 11 10
15 15 H 1.08997 * 112.85014 * 336.19652 * 14 13 11
16 16 C 1.53781 * 113.69216 * 107.46391 * 14 13 11
17 17 C 1.53784 * 87.08186 * 89.12665 * 16 14 13
18 18 H 1.09003 * 113.69177 * 270.87781 * 17 16 14
19 19 C 1.50701 * 113.61237 * 139.97968 * 17 16 14
20 20 C 1.38232 * 119.97343 * 322.50512 * 19 17 16
21 21 C 1.38294 * 120.11124 * 180.02562 * 20 19 17
22 22 C 1.38122 * 120.05499 * 359.97438 * 21 20 19
23 23 C 1.38756 * 119.94212 * 0.28466 * 22 21 20
24 24 O 1.35904 * 120.05096 * 179.71799 * 23 22 21
25 25 C 1.42900 * 117.00131 * 359.97438 * 24 23 22
26 26 F 1.39898 * 109.46979 * 60.00350 * 25 24 23
27 27 F 1.39898 * 109.46710 * 180.02562 * 25 24 23
28 28 F 1.39898 * 109.47016 * 300.00195 * 25 24 23
29 29 C 1.38173 * 119.96834 * 142.52862 * 19 17 16
30 30 C 1.53781 * 87.07986 * 25.43321 * 17 16 14
31 31 C 1.38736 * 119.89218 * 0.27659 * 7 6 5
32 32 C 1.38148 * 119.93718 * 359.46581 * 31 7 6
33 33 H 0.96699 * 114.00042 * 299.99776 * 1 2 3
34 34 H 1.09000 * 109.46793 * 240.00487 * 2 1 3
35 35 H 1.48502 * 110.00193 * 299.99961 * 3 2 1
36 36 H 1.48492 * 109.99982 * 61.32259 * 3 2 1
37 37 H 1.08001 * 119.97678 * 359.97438 * 5 4 2
38 38 H 1.07999 * 120.02299 * 179.97438 * 6 5 4
39 39 H 1.08996 * 109.47416 * 59.99892 * 9 8 7
40 40 H 1.09005 * 109.46840 * 300.00075 * 9 8 7
41 41 H 1.09005 * 109.47293 * 59.99890 * 10 9 8
42 42 H 1.09005 * 109.47208 * 299.99633 * 10 9 8
43 43 H 0.96996 * 120.00080 * 0.02562 * 13 11 10
44 44 H 1.08997 * 113.61243 * 334.58144 * 16 14 13
45 45 H 1.08996 * 113.61540 * 203.67243 * 16 14 13
46 46 H 1.08002 * 119.94710 * 0.02562 * 20 19 17
47 47 H 1.07999 * 119.97251 * 180.02562 * 21 20 19
48 48 H 1.08002 * 120.02504 * 180.02562 * 22 21 20
49 49 H 1.07997 * 120.02588 * 359.97438 * 29 19 17
50 50 H 1.09008 * 113.61801 * 89.11394 * 30 17 16
51 51 H 1.08999 * 113.62019 * 219.93194 * 30 17 16
52 52 H 1.07998 * 120.02883 * 179.72703 * 31 7 6
53 53 H 1.08003 * 119.96751 * 180.23086 * 32 31 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0499 1.7565 0.0000
4 6 1.9314 -0.7104 1.2304
5 6 1.6841 -2.0605 1.3971
6 6 2.1431 -2.7140 2.5244
7 6 2.8522 -2.0143 3.4898
8 8 3.3053 -2.6549 4.5994
9 6 4.0285 -1.8716 5.5510
10 6 4.4549 -2.7582 6.7226
11 6 5.2169 -1.9321 7.7265
12 8 5.4013 -0.7505 7.5244
13 7 5.6936 -2.5062 8.8488
14 6 6.4349 -1.7032 9.8244
15 1 6.8888 -0.8152 9.3843
16 6 5.6487 -1.4178 11.1149
17 6 6.2347 -2.7275 11.6682
18 1 5.6282 -3.6061 11.4482
19 6 6.6387 -2.6432 13.1176
20 6 7.2076 -1.4834 13.6096
21 6 7.5799 -1.4031 14.9391
22 6 7.3835 -2.4820 15.7789
23 6 6.8175 -3.6491 15.2861
24 8 6.6285 -4.7140 16.1091
25 6 7.0363 -4.5624 17.4703
26 9 6.3289 -3.5060 18.0541
27 9 6.7721 -5.7444 18.1705
28 9 8.4074 -4.2887 17.5186
29 6 6.4405 -3.7254 13.9535
30 6 7.4040 -2.5256 10.6901
31 6 3.0937 -0.6583 3.3232
32 6 2.6371 -0.0106 2.1915
33 1 -0.3933 0.4417 0.7651
34 1 1.7922 -0.5138 -0.8900
35 1 1.5614 2.4680 -1.2085
36 1 1.5879 2.4585 1.2242
37 1 1.1308 -2.6046 0.6458
38 1 1.9493 -3.7684 2.6543
39 1 3.3920 -1.0661 5.9173
40 1 4.9132 -1.4480 5.0756
41 1 5.0916 -3.5635 6.3560
42 1 3.5704 -3.1822 7.1982
43 1 5.5465 -3.4513 9.0102
44 1 4.5672 -1.4452 10.9823
45 1 5.9888 -0.5287 11.6458
46 1 7.3617 -0.6386 12.9547
47 1 8.0238 -0.4958 15.3212
48 1 7.6740 -2.4186 16.8171
49 1 5.9959 -4.6313 13.5686
50 1 8.2241 -1.9393 11.1048
51 1 7.7406 -3.4474 10.2156
52 1 3.6417 -0.1105 4.0755
53 1 2.8280 1.0442 2.0596
There are 80 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 80
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_10860230_4549602.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 13:54:00
Heat of formation + Delta-G solvation = -211.975381 kcal
Electronic energy + Delta-G solvation = -40260.169519 eV
Core-core repulsion = 34229.079035 eV
Total energy + Delta-G solvation = -6031.090484 eV
No. of doubly occupied orbitals = 80
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 438.153 amu
Computer time = 1.60 seconds
Orbital eigenvalues (eV)
-51.54636 -49.26463 -49.14461 -41.79623 -41.35330 -40.98830 -39.89481 -39.15415
-38.16506 -37.28933 -34.59716 -33.31797 -32.23617 -31.97747 -31.47082 -31.07724
-27.30015 -26.87896 -26.65299 -26.16597 -25.31721 -23.93486 -23.59181 -22.93788
-22.24630 -21.53784 -20.98532 -20.26408 -20.12599 -19.66542 -19.53296 -18.46411
-18.09473 -17.63464 -17.46117 -17.18851 -17.13328 -16.90266 -16.46628 -16.35776
-16.34384 -16.19260 -15.99053 -15.91460 -15.72478 -15.64277 -15.61616 -15.54941
-15.27720 -15.25828 -15.16425 -14.75018 -14.72178 -14.50602 -14.36829 -14.29178
-14.26719 -14.03217 -13.81884 -13.49858 -13.45436 -12.97755 -12.88293 -12.79645
-12.75930 -12.67772 -12.27403 -12.06191 -11.82367 -11.77356 -11.68760 -11.57973
-11.27910 -11.04373 -10.58879 -10.09748 -10.03330 -9.92296 -9.57974 -9.22159
-4.93032 0.09771 0.22352 0.28460 0.31187 0.37612 1.31914 1.52864
1.58304 1.70952 1.73562 1.94116 2.48889 2.49647 2.65402 2.67051
2.89379 3.44653 3.45212 3.57095 3.58819 3.60915 3.69745 3.73012
3.83430 3.87131 3.90373 3.92201 3.95679 4.03839 4.05976 4.19228
4.26745 4.28722 4.35110 4.42086 4.45298 4.56707 4.66329 4.69633
4.70797 4.79998 4.80166 4.86245 4.90026 4.98125 4.98499 5.00568
5.05240 5.16737 5.18685 5.26576 5.29337 5.35541 5.48696 5.49842
5.65059 5.72642 5.88422 6.32804 6.48351 6.49249 7.18126
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.549 6.549
2 C -0.075 4.075
3 Si 0.759 3.241
4 C -0.158 4.158
5 C -0.059 4.059
6 C -0.159 4.159
7 C 0.124 3.876
8 O -0.321 6.321
9 C 0.072 3.928
10 C -0.133 4.133
11 C 0.523 3.477
12 O -0.582 6.582
13 N -0.699 5.699
14 C 0.115 3.885
15 H 0.088 0.912
16 C -0.141 4.141
17 C -0.068 4.068
18 H 0.116 0.884
19 C -0.034 4.034
20 C -0.134 4.134
21 C -0.080 4.080
22 C -0.208 4.208
23 C 0.084 3.916
24 O -0.319 6.319
25 C 0.608 3.392
26 F -0.166 7.166
27 F -0.133 7.133
28 F -0.165 7.165
29 C -0.128 4.128
30 C -0.124 4.124
31 C -0.210 4.210
32 C -0.082 4.082
33 H 0.385 0.615
34 H 0.126 0.874
35 H -0.302 1.302
36 H -0.285 1.285
37 H 0.141 0.859
38 H 0.142 0.858
39 H 0.064 0.936
40 H 0.068 0.932
41 H 0.128 0.872
42 H 0.126 0.874
43 H 0.419 0.581
44 H 0.069 0.931
45 H 0.100 0.900
46 H 0.151 0.849
47 H 0.151 0.849
48 H 0.131 0.869
49 H 0.149 0.851
50 H 0.103 0.897
51 H 0.090 0.910
52 H 0.140 0.860
53 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.270 -1.853 0.603 3.807
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.357 6.357
2 C -0.184 4.184
3 Si 0.665 3.335
4 C -0.159 4.159
5 C -0.077 4.077
6 C -0.177 4.177
7 C 0.079 3.921
8 O -0.235 6.235
9 C -0.004 4.004
10 C -0.173 4.173
11 C 0.310 3.690
12 O -0.461 6.461
13 N -0.350 5.350
14 C 0.009 3.991
15 H 0.107 0.893
16 C -0.180 4.180
17 C -0.086 4.086
18 H 0.134 0.866
19 C -0.034 4.034
20 C -0.151 4.151
21 C -0.098 4.098
22 C -0.227 4.227
23 C 0.042 3.958
24 O -0.240 6.240
25 C 0.518 3.482
26 F -0.148 7.148
27 F -0.114 7.114
28 F -0.147 7.147
29 C -0.146 4.146
30 C -0.162 4.162
31 C -0.229 4.229
32 C -0.099 4.099
33 H 0.234 0.766
34 H 0.144 0.856
35 H -0.230 1.230
36 H -0.212 1.212
37 H 0.158 0.842
38 H 0.160 0.840
39 H 0.082 0.918
40 H 0.086 0.914
41 H 0.146 0.854
42 H 0.144 0.856
43 H 0.257 0.743
44 H 0.088 0.912
45 H 0.119 0.881
46 H 0.168 0.832
47 H 0.169 0.831
48 H 0.149 0.851
49 H 0.166 0.834
50 H 0.121 0.879
51 H 0.108 0.892
52 H 0.157 0.843
53 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 3.213 -0.892 -0.011 3.334
hybrid contribution -1.048 -0.300 1.439 1.805
sum 2.164 -1.192 1.427 2.853
Atomic orbital electron populations
1.86566 1.18637 1.80317 1.50141 1.25095 0.83282 1.11340 0.98659
0.94120 0.90543 0.72588 0.76222 1.20233 1.02644 0.95160 0.97836
1.20997 0.96546 0.93692 0.96426 1.20678 1.01781 1.01395 0.93851
1.19178 0.94528 0.91300 0.87107 1.85958 1.69280 1.38846 1.29437
1.22469 0.95854 0.93619 0.88418 1.21440 1.03047 0.99185 0.93580
1.20612 0.78478 0.87508 0.82362 1.90744 1.59582 1.18061 1.77763
1.45536 1.55723 1.13942 1.19845 1.21843 0.93502 0.95462 0.88278
0.89337 1.23572 1.00686 0.97879 0.95862 1.21670 0.98458 0.99871
0.88577 0.86597 1.19697 0.96034 0.92254 0.95449 1.21375 0.99410
0.98666 0.95686 1.21250 0.97075 0.98054 0.93398 1.21684 1.04986
0.94117 1.01890 1.18971 1.00811 0.85446 0.90563 1.86400 1.79807
1.40131 1.17637 1.19262 0.74834 0.74467 0.79682 1.93304 1.78905
1.57665 1.84919 1.93318 1.93944 1.47102 1.77047 1.93304 1.31952
1.93420 1.96062 1.20533 1.03705 1.01281 0.89112 1.23388 0.96370
1.01388 0.95042 1.21413 1.06555 0.93906 1.00985 1.21023 0.96071
1.00081 0.92745 0.76586 0.85620 1.23018 1.21223 0.84153 0.84001
0.91793 0.91395 0.85369 0.85602 0.74346 0.91185 0.88144 0.83182
0.83134 0.85146 0.83359 0.87853 0.89183 0.84269 0.84123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.55 -1.73 12.83 -148.98 -1.91 -3.64 16
2 C -0.07 -0.01 2.80 71.24 0.20 0.19 16
3 Si 0.76 -0.63 29.88 68.60 2.05 1.42 16
4 C -0.16 -0.18 5.35 -19.85 -0.11 -0.28 16
5 C -0.06 -0.09 9.68 22.26 0.22 0.13 16
6 C -0.16 -0.36 9.99 22.36 0.22 -0.13 16
7 C 0.12 0.42 6.69 22.50 0.15 0.57 16
8 O -0.32 -0.69 10.14 -92.44 -0.94 -1.63 16
9 C 0.07 -0.06 4.03 71.98 0.29 0.23 16
10 C -0.13 0.85 6.07 29.85 0.18 1.03 16
11 C 0.52 -1.04 7.83 87.66 0.69 -0.35 16
12 O -0.58 -4.20 15.58 -3.04 -0.05 -4.25 16
13 N -0.70 5.13 5.27 -440.03 -2.32 2.81 16
14 C 0.11 -0.69 4.32 45.52 0.20 -0.49 16
15 H 0.09 -0.13 7.46 -2.39 -0.02 -0.14 16
16 C -0.14 0.94 7.25 31.12 0.23 1.17 16
17 C -0.07 0.58 3.86 -11.01 -0.04 0.53 16
18 H 0.12 -1.28 8.09 -2.39 -0.02 -1.30 16
19 C -0.03 0.15 5.29 -19.88 -0.11 0.05 16
20 C -0.13 0.61 8.61 22.28 0.19 0.80 16
21 C -0.08 0.20 10.04 22.26 0.22 0.43 16
22 C -0.21 -0.20 8.26 22.37 0.18 -0.01 16
23 C 0.08 0.18 6.48 22.51 0.15 0.33 16
24 O -0.32 -1.15 10.37 -92.47 -0.96 -2.11 16
25 C 0.61 1.54 3.42 113.37 0.39 1.93 16
26 F -0.17 -0.46 15.56 44.97 0.70 0.24 16
27 F -0.13 -0.40 17.53 44.97 0.79 0.39 16
28 F -0.17 -0.43 15.56 44.97 0.70 0.27 16
29 C -0.13 0.19 9.65 22.37 0.22 0.40 16
30 C -0.12 1.15 7.29 31.12 0.23 1.37 16
31 C -0.21 -0.47 9.04 22.37 0.20 -0.27 16
32 C -0.08 -0.07 8.66 22.25 0.19 0.12 16
33 H 0.39 -0.80 8.70 -74.06 -0.64 -1.45 16
34 H 0.13 -0.23 7.96 -2.39 -0.02 -0.25 16
35 H -0.30 -2.02 7.11 99.48 0.71 -1.32 16
36 H -0.29 -0.89 7.00 99.48 0.70 -0.19 16
37 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16
38 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16
39 H 0.06 0.05 7.61 -2.39 -0.02 0.03 16
40 H 0.07 0.02 7.63 -2.38 -0.02 0.00 16
41 H 0.13 -1.30 8.14 -2.38 -0.02 -1.32 16
42 H 0.13 -1.23 8.14 -2.38 -0.02 -1.25 16
43 H 0.42 -5.59 8.70 -92.71 -0.81 -6.40 16
44 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16
45 H 0.10 -0.72 6.31 -2.39 -0.02 -0.73 16
46 H 0.15 -1.28 6.65 -2.91 -0.02 -1.30 16
47 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16
48 H 0.13 0.09 5.10 -2.91 -0.01 0.07 16
49 H 0.15 -0.67 8.05 -2.91 -0.02 -0.69 16
50 H 0.10 -0.95 7.72 -2.38 -0.02 -0.97 16
51 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16
52 H 0.14 0.06 6.30 -2.91 -0.02 0.05 16
53 H 0.14 -0.33 4.83 -2.91 -0.01 -0.34 16
Total: 0.00 -20.49 449.31 1.74 -18.76
By element:
Atomic # 1 Polarization: -19.60 SS G_CDS: -0.41 Total: -20.01 kcal
Atomic # 6 Polarization: 3.66 SS G_CDS: 4.09 Total: 7.75 kcal
Atomic # 7 Polarization: 5.13 SS G_CDS: -2.32 Total: 2.81 kcal
Atomic # 8 Polarization: -7.77 SS G_CDS: -3.86 Total: -11.63 kcal
Atomic # 9 Polarization: -1.28 SS G_CDS: 2.19 Total: 0.91 kcal
Atomic # 14 Polarization: -0.63 SS G_CDS: 2.05 Total: 1.42 kcal
Total: -20.49 1.74 -18.76 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_10860230_4549602.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -193.220 kcal
(2) G-P(sol) polarization free energy of solvation -20.495 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.755 kcal
(6) G-S(sol) free energy of system = (1) + (5) -211.975 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.60 seconds