Wall clock time and date at job start Sat Mar 6 2021 13:54:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42901 * 1
3 3 Si 1.86299 * 109.47112 * 2 1
4 4 C 1.50699 * 109.46839 * 239.99796 * 2 1 3
5 5 C 1.38241 * 119.94532 * 300.01978 * 4 2 1
6 6 C 1.38176 * 120.05609 * 179.72493 * 5 4 2
7 7 N 1.47998 * 120.02979 * 180.26207 * 6 5 4
8 8 O 1.21801 * 119.99961 * 0.22661 * 7 6 5
9 9 O 1.21799 * 119.99952 * 180.23473 * 7 6 5
10 10 C 1.38710 * 119.93840 * 0.48581 * 6 5 4
11 11 O 1.35905 * 120.05304 * 179.79269 * 10 6 5
12 12 C 1.42893 * 117.00040 * 179.72947 * 11 10 6
13 13 C 1.50698 * 109.47354 * 180.02562 * 12 11 10
14 14 O 1.21285 * 119.99705 * 359.97438 * 13 12 11
15 15 N 1.34772 * 120.00304 * 179.97438 * 13 12 11
16 16 C 1.46502 * 120.00016 * 179.97438 * 15 13 12
17 17 H 1.08995 * 112.84952 * 336.19397 * 16 15 13
18 18 C 1.53957 * 113.53676 * 107.50871 * 16 15 13
19 19 C 1.53780 * 87.02062 * 89.18723 * 18 16 15
20 20 H 1.09001 * 113.61379 * 270.77134 * 19 18 16
21 21 C 1.50703 * 113.61266 * 139.95057 * 19 18 16
22 22 C 1.38237 * 119.97379 * 320.84189 * 21 19 18
23 23 C 1.38289 * 120.11494 * 179.76931 * 22 21 19
24 24 C 1.38125 * 120.05202 * 0.50894 * 23 22 21
25 25 C 1.38755 * 119.93999 * 359.48967 * 24 23 22
26 26 O 1.35906 * 120.05296 * 180.27973 * 25 24 23
27 27 C 1.42901 * 117.00155 * 359.97438 * 26 25 24
28 28 F 1.39903 * 109.46874 * 59.99823 * 27 26 25
29 29 F 1.39901 * 109.47402 * 180.02562 * 27 26 25
30 30 F 1.39903 * 109.46994 * 300.00634 * 27 26 25
31 31 C 1.38167 * 119.96762 * 140.86582 * 21 19 18
32 32 C 1.53787 * 113.61402 * 205.00373 * 16 15 13
33 33 C 1.38750 * 119.89348 * 359.51965 * 10 6 5
34 34 C 1.38125 * 119.94072 * 0.24540 * 33 10 6
35 35 H 0.96696 * 113.99999 * 299.99852 * 1 2 3
36 36 H 1.09003 * 109.46708 * 120.00063 * 2 1 3
37 37 H 1.48498 * 109.99807 * 300.00106 * 3 2 1
38 38 H 1.48500 * 109.99972 * 61.31880 * 3 2 1
39 39 H 1.07998 * 119.97823 * 359.97438 * 5 4 2
40 40 H 1.08997 * 109.47926 * 59.99404 * 12 11 10
41 41 H 1.09004 * 109.46944 * 299.99729 * 12 11 10
42 42 H 0.97003 * 120.00180 * 0.02562 * 15 13 12
43 43 H 1.08998 * 113.66587 * 334.65996 * 18 16 15
44 44 H 1.09002 * 113.60681 * 203.71005 * 18 16 15
45 45 H 1.08001 * 119.94627 * 0.02562 * 22 21 19
46 46 H 1.07995 * 119.98087 * 180.27524 * 23 22 21
47 47 H 1.08002 * 120.03152 * 179.77429 * 24 23 22
48 48 H 1.07993 * 120.03379 * 359.95490 * 31 21 19
49 49 H 1.08995 * 113.61757 * 156.33496 * 32 16 15
50 50 H 1.09001 * 113.69322 * 25.44086 * 32 16 15
51 51 H 1.08001 * 120.03108 * 180.27376 * 33 10 6
52 52 H 1.08007 * 119.97185 * 179.97438 * 34 33 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7564 0.0000
4 6 1.9313 -0.7105 -1.2304
5 6 1.5962 -2.0339 -1.4482
6 6 2.0508 -2.6858 -2.5785
7 7 1.6870 -4.1009 -2.8140
8 8 0.9831 -4.6901 -2.0134
9 8 2.0915 -4.6764 -3.8084
10 6 2.8523 -2.0142 -3.4899
11 8 3.3041 -2.6545 -4.6003
12 6 4.1199 -1.8991 -5.4979
13 6 4.5230 -2.7672 -6.6618
14 8 4.1490 -3.9196 -6.7169
15 7 5.2992 -2.2631 -7.6415
16 6 5.6916 -3.1073 -8.7727
17 1 5.6672 -4.1709 -8.5356
18 6 4.9730 -2.7483 -10.0861
19 6 6.1245 -1.7647 -10.3536
20 1 5.9521 -0.7691 -9.9448
21 6 6.5730 -1.7372 -11.7920
22 6 6.6418 -2.9124 -12.5167
23 6 7.0484 -2.8899 -13.8382
24 6 7.3970 -1.6937 -14.4344
25 6 7.3287 -0.5127 -13.7092
26 8 7.6658 0.6663 -14.2952
27 6 8.0822 0.6161 -15.6613
28 9 7.0499 0.0886 -16.4444
29 9 8.3900 1.9075 -16.1028
30 9 9.2151 -0.1971 -15.7738
31 6 6.9156 -0.5373 -12.3853
32 6 6.9951 -2.6578 -9.4539
33 6 3.1872 -0.6860 -3.2690
34 6 2.7262 -0.0373 -2.1400
35 1 -0.3933 0.4417 0.7650
36 1 1.7923 -0.5139 0.8900
37 1 1.5614 2.4678 -1.2085
38 1 1.5879 2.4585 1.2242
39 1 0.9754 -2.5575 -0.7364
40 1 5.0120 -1.5540 -4.9754
41 1 3.5579 -1.0396 -5.8637
42 1 5.5987 -1.3415 -7.5973
43 1 4.0088 -2.2620 -9.9385
44 1 4.9281 -3.5722 -10.7984
45 1 6.3735 -3.8493 -12.0511
46 1 7.0971 -3.8087 -14.4036
47 1 7.7180 -1.6770 -15.4655
48 1 6.8614 0.3806 -11.8189
49 1 7.5040 -3.4568 -9.9931
50 1 7.6619 -2.0985 -8.7976
51 1 3.8074 -0.1596 -3.9794
52 1 2.9870 0.9965 -1.9673
There are 85 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 85
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_10860230_4549638.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 13:54:42
Heat of formation + Delta-G solvation = -198.761025 kcal
Electronic energy + Delta-G solvation = -45653.268586 eV
Core-core repulsion = 38947.272303 eV
Total energy + Delta-G solvation = -6705.996283 eV
No. of doubly occupied orbitals = 85
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 469.132 amu
Computer time = 1.77 seconds
Orbital eigenvalues (eV)
-51.53804 -49.25706 -49.13718 -43.28250 -41.88745 -41.58402 -40.95574 -39.98032
-39.20743 -38.11583 -37.61955 -37.47531 -34.64042 -33.50032 -32.38047 -32.21458
-31.30170 -29.74932 -27.80996 -27.24619 -26.67080 -26.60448 -25.95738 -24.16398
-23.88794 -23.05447 -22.71740 -21.91524 -21.00734 -20.44482 -20.25566 -20.12164
-19.77553 -19.65620 -19.06112 -18.72032 -18.59437 -18.43007 -17.90621 -17.54360
-17.38060 -17.12801 -16.88359 -16.49300 -16.35175 -16.34434 -15.96195 -15.92141
-15.90122 -15.62412 -15.59971 -15.55108 -15.53291 -15.34772 -15.25140 -15.24740
-14.86435 -14.46551 -14.34964 -14.24082 -14.10226 -13.96157 -13.79050 -13.73178
-13.44317 -13.13592 -12.92413 -12.81167 -12.70264 -12.68457 -12.67294 -12.33137
-12.26256 -12.11608 -11.90336 -11.80371 -11.68172 -11.27091 -11.00545 -10.81567
-10.60958 -10.12369 -9.90721 -9.75470 -9.56714 -4.92679 -1.29584 -0.22450
0.10938 0.17265 0.23864 0.36381 0.38340 1.22089 1.26909 1.47457
1.63761 1.74592 1.98642 2.04172 2.33699 2.50480 2.67832 2.90021
3.07411 3.23567 3.32261 3.46257 3.54854 3.60064 3.61598 3.63272
3.71711 3.72790 3.88492 3.90318 3.95978 3.97899 4.05168 4.08359
4.20812 4.25164 4.30632 4.33973 4.43423 4.52758 4.63755 4.68292
4.81987 4.86530 4.87337 4.90274 4.99551 5.01640 5.06945 5.08804
5.17063 5.20491 5.27341 5.36764 5.48160 5.65102 5.78174 5.89700
6.43965 6.48255 6.53483 7.19335
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.562 6.562
2 C -0.095 4.095
3 Si 0.786 3.214
4 C -0.112 4.112
5 C -0.005 4.005
6 C -0.105 4.105
7 N 0.035 4.965
8 O -0.205 6.205
9 O -0.171 6.171
10 C 0.194 3.806
11 O -0.291 6.291
12 C 0.023 3.977
13 C 0.511 3.489
14 O -0.565 6.565
15 N -0.690 5.690
16 C 0.115 3.885
17 H 0.082 0.918
18 C -0.144 4.144
19 C -0.064 4.064
20 H 0.123 0.877
21 C -0.034 4.034
22 C -0.135 4.135
23 C -0.081 4.081
24 C -0.209 4.209
25 C 0.083 3.917
26 O -0.318 6.318
27 C 0.608 3.392
28 F -0.166 7.166
29 F -0.133 7.133
30 F -0.166 7.166
31 C -0.125 4.125
32 C -0.121 4.121
33 C -0.187 4.187
34 C -0.007 4.007
35 H 0.399 0.601
36 H 0.099 0.901
37 H -0.280 1.280
38 H -0.292 1.292
39 H 0.150 0.850
40 H 0.149 0.851
41 H 0.143 0.857
42 H 0.423 0.577
43 H 0.071 0.929
44 H 0.096 0.904
45 H 0.148 0.852
46 H 0.149 0.851
47 H 0.130 0.870
48 H 0.153 0.847
49 H 0.101 0.899
50 H 0.096 0.904
51 H 0.210 0.790
52 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.334 11.595 2.994 14.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.373 6.373
2 C -0.202 4.202
3 Si 0.689 3.311
4 C -0.114 4.114
5 C -0.024 4.024
6 C -0.191 4.191
7 N 0.545 4.455
8 O -0.411 6.411
9 O -0.385 6.385
10 C 0.144 3.856
11 O -0.201 6.201
12 C -0.054 4.054
13 C 0.297 3.703
14 O -0.442 6.442
15 N -0.345 5.345
16 C 0.010 3.990
17 H 0.100 0.900
18 C -0.182 4.182
19 C -0.082 4.082
20 H 0.141 0.859
21 C -0.034 4.034
22 C -0.152 4.152
23 C -0.099 4.099
24 C -0.227 4.227
25 C 0.042 3.958
26 O -0.239 6.239
27 C 0.517 3.483
28 F -0.148 7.148
29 F -0.114 7.114
30 F -0.148 7.148
31 C -0.143 4.143
32 C -0.159 4.159
33 C -0.205 4.205
34 C -0.024 4.024
35 H 0.250 0.750
36 H 0.117 0.883
37 H -0.207 1.207
38 H -0.219 1.219
39 H 0.168 0.832
40 H 0.166 0.834
41 H 0.160 0.840
42 H 0.262 0.738
43 H 0.089 0.911
44 H 0.114 0.886
45 H 0.165 0.835
46 H 0.166 0.834
47 H 0.148 0.852
48 H 0.170 0.830
49 H 0.119 0.881
50 H 0.114 0.886
51 H 0.226 0.774
52 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges 7.082 11.878 2.500 14.053
hybrid contribution -1.416 -0.719 -0.197 1.600
sum 5.667 11.159 2.302 12.725
Atomic orbital electron populations
1.86544 1.18475 1.81002 1.51284 1.25240 0.84361 1.13087 0.97467
0.94246 0.89249 0.70178 0.77425 1.19461 1.01202 0.91967 0.98742
1.20827 0.93960 0.94867 0.92763 1.20844 1.13386 0.81736 1.03096
1.43861 0.98235 1.03896 0.99466 1.94498 1.35922 1.68314 1.42408
1.94671 1.56434 1.69205 1.18226 1.18932 0.89625 0.92024 0.84980
1.86467 1.63749 1.39711 1.30172 1.23148 0.98313 0.94454 0.89469
1.20487 0.78448 0.87598 0.83806 1.90856 1.54738 1.20265 1.78308
1.45282 1.51463 1.16510 1.21211 1.21876 0.96447 0.95542 0.85170
0.89952 1.23611 0.97989 0.99669 0.96955 1.21682 0.96341 1.00551
0.89638 0.85885 1.19707 0.96138 0.91462 0.96140 1.21369 1.00548
0.99237 0.94095 1.21231 0.95801 0.97485 0.95406 1.21675 1.06837
0.93053 1.01141 1.18981 1.00621 0.82229 0.94004 1.86398 1.81505
1.33208 1.22752 1.19277 0.75184 0.74613 0.79225 1.93306 1.59471
1.86404 1.75668 1.93319 1.92705 1.37350 1.88017 1.93306 1.52554
1.73224 1.95684 1.20543 1.02594 1.00275 0.90909 1.23381 0.95303
0.99836 0.97411 1.21799 1.06186 0.90460 1.02099 1.21672 0.89920
1.01055 0.89786 0.74975 0.88308 1.20682 1.21902 0.83211 0.83399
0.84001 0.73794 0.91072 0.88570 0.83458 0.83368 0.85242 0.82956
0.88085 0.88550 0.77361 0.79636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.56 1.06 12.74 -148.98 -1.90 -0.84 16
2 C -0.09 0.62 2.81 71.24 0.20 0.82 16
3 Si 0.79 -8.08 29.78 68.60 2.04 -6.04 16
4 C -0.11 0.43 5.42 -19.85 -0.11 0.32 16
5 C -0.01 -0.02 9.11 22.26 0.20 0.19 16
6 C -0.11 -0.82 6.87 36.48 0.25 -0.57 16
7 N 0.04 0.60 4.45 -46.24 -0.21 0.40 16
8 O -0.20 -3.88 18.45 18.89 0.35 -3.53 16
9 O -0.17 -3.69 17.24 25.61 0.44 -3.25 16
10 C 0.19 0.16 6.67 22.51 0.15 0.31 16
11 O -0.29 -1.14 7.68 -63.46 -0.49 -1.63 16
12 C 0.02 -0.20 5.22 71.24 0.37 0.17 16
13 C 0.51 -0.41 7.91 87.66 0.69 0.28 16
14 O -0.56 -7.53 16.10 15.99 0.26 -7.27 16
15 N -0.69 6.07 5.26 -439.75 -2.31 3.76 16
16 C 0.12 -0.67 4.33 45.58 0.20 -0.48 16
17 H 0.08 0.04 7.46 -2.39 -0.02 0.02 16
18 C -0.14 0.94 7.27 31.18 0.23 1.16 16
19 C -0.06 0.63 3.85 -11.01 -0.04 0.59 16
20 H 0.12 -1.70 8.09 -2.39 -0.02 -1.72 16
21 C -0.03 0.18 5.29 -19.88 -0.11 0.07 16
22 C -0.13 0.60 8.53 22.28 0.19 0.79 16
23 C -0.08 0.19 10.04 22.25 0.22 0.41 16
24 C -0.21 -0.17 8.26 22.37 0.18 0.01 16
25 C 0.08 0.12 6.48 22.51 0.15 0.27 16
26 O -0.32 -0.91 10.37 -92.49 -0.96 -1.87 16
27 C 0.61 1.30 3.42 113.37 0.39 1.69 16
28 F -0.17 -0.43 15.56 44.97 0.70 0.27 16
29 F -0.13 -0.33 17.53 44.97 0.79 0.46 16
30 F -0.17 -0.38 15.56 44.97 0.70 0.32 16
31 C -0.12 0.33 9.65 22.37 0.22 0.55 16
32 C -0.12 1.24 7.29 31.12 0.23 1.47 16
33 C -0.19 1.92 9.04 22.37 0.20 2.13 16
34 C -0.01 0.07 8.66 22.25 0.19 0.26 16
35 H 0.40 -3.81 8.74 -74.06 -0.65 -4.46 16
36 H 0.10 -0.95 7.96 -2.39 -0.02 -0.97 16
37 H -0.28 1.45 7.11 99.48 0.71 2.16 16
38 H -0.29 1.17 7.11 99.48 0.71 1.88 16
39 H 0.15 0.70 7.61 -2.91 -0.02 0.68 16
40 H 0.15 -2.65 7.66 -2.39 -0.02 -2.67 16
41 H 0.14 -2.40 7.66 -2.38 -0.02 -2.42 16
42 H 0.42 -7.42 8.70 -92.71 -0.81 -8.22 16
43 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16
44 H 0.10 -0.57 6.39 -2.39 -0.02 -0.59 16
45 H 0.15 -1.15 6.72 -2.91 -0.02 -1.17 16
46 H 0.15 -0.88 8.06 -2.91 -0.02 -0.90 16
47 H 0.13 0.09 5.10 -2.91 -0.01 0.07 16
48 H 0.15 -0.98 8.05 -2.91 -0.02 -1.01 16
49 H 0.10 -0.95 7.64 -2.39 -0.02 -0.97 16
50 H 0.10 -1.24 8.14 -2.39 -0.02 -1.26 16
51 H 0.21 -4.40 6.30 -2.91 -0.02 -4.42 16
52 H 0.19 -3.27 4.87 -2.91 -0.01 -3.28 16
Total: 0.00 -41.45 454.38 3.08 -38.37
By element:
Atomic # 1 Polarization: -29.25 SS G_CDS: -0.34 Total: -29.60 kcal
Atomic # 6 Polarization: 6.44 SS G_CDS: 4.01 Total: 10.44 kcal
Atomic # 7 Polarization: 6.67 SS G_CDS: -2.52 Total: 4.16 kcal
Atomic # 8 Polarization: -16.09 SS G_CDS: -2.30 Total: -18.39 kcal
Atomic # 9 Polarization: -1.14 SS G_CDS: 2.19 Total: 1.05 kcal
Atomic # 14 Polarization: -8.08 SS G_CDS: 2.04 Total: -6.04 kcal
Total: -41.45 3.08 -38.37 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_10860230_4549638.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -160.388 kcal
(2) G-P(sol) polarization free energy of solvation -41.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) -198.761 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.78 seconds