Wall clock time and date at job start Sat Mar 6 2021 15:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00178 * 2 1 4 4 C 1.38710 * 120.05728 * 0.29904 * 3 2 1 5 5 C 1.38164 * 119.94388 * 180.21195 * 4 3 2 6 6 C 1.38250 * 120.05443 * 359.51192 * 5 4 3 7 7 C 1.38287 * 120.10982 * 0.22931 * 6 5 4 8 8 C 1.50703 * 119.96590 * 180.02562 * 7 6 5 9 9 H 1.09002 * 112.84659 * 189.66459 * 8 7 6 10 10 C 1.53773 * 113.62028 * 320.86803 * 8 7 6 11 11 C 1.53953 * 87.02460 * 139.95250 * 10 8 7 12 12 H 1.09000 * 113.74455 * 220.05841 * 11 10 8 13 13 N 1.46500 * 113.53593 * 89.18865 * 11 10 8 14 14 C 1.46497 * 120.00059 * 338.16785 * 13 11 10 15 15 C 1.34777 * 119.99901 * 158.17453 * 13 11 10 16 16 O 1.21585 * 119.99782 * 5.76924 * 15 13 11 17 17 C 1.47597 * 119.99921 * 185.76972 * 15 13 11 18 18 C 1.39715 * 120.08820 * 323.07010 * 17 15 13 19 19 C 1.37719 * 119.90873 * 179.97438 * 18 17 15 20 20 C 1.50701 * 119.95594 * 180.02562 * 19 18 17 21 21 C 1.38979 * 120.09439 * 0.02562 * 19 18 17 22 22 O 1.35708 * 119.91389 * 179.97438 * 21 19 18 23 23 C 1.39017 * 120.16966 * 359.95515 * 21 19 18 24 24 C 1.50700 * 119.95154 * 180.02562 * 23 21 19 25 25 O 1.42905 * 109.47312 * 75.00244 * 24 23 21 26 26 Si 1.86300 * 109.47151 * 194.99976 * 24 23 21 27 27 C 1.37682 * 120.09332 * 359.78844 * 23 21 19 28 28 C 1.53777 * 113.61457 * 58.47787 * 8 7 6 29 29 C 1.38118 * 120.05856 * 0.02562 * 7 6 5 30 30 H 1.08999 * 109.47086 * 300.00017 * 1 2 3 31 31 H 1.08999 * 109.46539 * 59.99842 * 1 2 3 32 32 H 1.08994 * 109.47512 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.02414 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.97244 * 179.78889 * 5 4 3 35 35 H 1.08000 * 119.94123 * 180.25677 * 6 5 4 36 36 H 1.09003 * 113.61564 * 254.53706 * 10 8 7 37 37 H 1.09001 * 113.61342 * 25.43135 * 10 8 7 38 38 H 1.08999 * 109.46731 * 35.85131 * 14 13 11 39 39 H 1.08998 * 109.46724 * 155.84567 * 14 13 11 40 40 H 1.08997 * 109.47688 * 275.85045 * 14 13 11 41 41 H 1.07998 * 120.04591 * 359.95909 * 18 17 15 42 42 H 1.09001 * 109.47263 * 89.99771 * 20 19 18 43 43 H 1.08999 * 109.47672 * 209.99999 * 20 19 18 44 44 H 1.09003 * 109.46871 * 329.99864 * 20 19 18 45 45 H 0.96700 * 114.00249 * 90.00293 * 22 21 19 46 46 H 1.09000 * 109.47631 * 315.00013 * 24 23 21 47 47 H 0.96696 * 113.99877 * 59.99787 * 25 24 23 48 48 H 1.48501 * 110.00531 * 179.97438 * 26 24 23 49 49 H 1.48504 * 110.00326 * 301.32183 * 26 24 23 50 50 H 1.07995 * 120.04683 * 180.23252 * 27 23 21 51 51 H 1.09001 * 113.61468 * 334.56384 * 28 8 7 52 52 H 1.09000 * 113.61837 * 105.46614 * 28 8 7 53 53 H 1.07998 * 120.02886 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2918 2.3749 0.0063 5 6 1.9214 3.6047 0.0018 6 6 3.3021 3.6757 0.0013 7 6 4.0563 2.5165 0.0005 8 6 5.5612 2.5976 0.0006 9 1 6.0370 1.6317 -0.1688 10 6 6.1176 3.7227 -0.8878 11 6 7.1515 3.9797 0.2235 12 1 7.3481 5.0364 0.4044 13 7 8.3768 3.1901 0.0765 14 6 8.3641 1.9592 -0.7176 15 6 9.5156 3.5962 0.6720 16 8 9.5032 4.5580 1.4157 17 6 10.7778 2.8734 0.4214 18 6 10.7725 1.4836 0.2778 19 6 11.9523 0.8129 0.0435 20 6 11.9477 -0.6860 -0.1121 21 6 13.1472 1.5165 -0.0497 22 8 14.3077 0.8519 -0.2802 23 6 13.1566 2.8994 0.0922 24 6 14.4550 3.6574 -0.0104 25 8 14.8571 3.7306 -1.3797 26 14 14.2235 5.3795 0.6616 27 6 11.9807 3.5779 0.3214 28 6 6.1366 3.3655 1.2022 29 6 3.4316 1.2847 -0.0004 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2131 2.3200 0.0107 34 1 1.3346 4.5114 0.0033 35 1 3.7925 4.6379 0.0021 36 1 6.5563 3.3666 -1.8199 37 1 5.4207 4.5478 -1.0351 38 1 7.6969 2.0839 -1.5704 39 1 9.3722 1.7459 -1.0732 40 1 8.0140 1.1320 -0.1003 41 1 9.8445 0.9360 0.3508 42 1 11.8054 -0.9419 -1.1620 43 1 12.8986 -1.0903 0.2348 44 1 11.1355 -1.1101 0.4785 45 1 14.5230 0.7496 -1.2173 46 1 15.2230 3.1425 0.5668 47 1 14.2197 4.1774 -1.9534 48 1 15.4970 6.1374 0.5668 49 1 13.1566 6.0814 -0.0963 50 1 11.9884 4.6525 0.4277 51 1 5.4450 4.0928 1.6275 52 1 6.5909 2.7214 1.9551 53 1 4.0211 0.3798 -0.0014 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10860584_13287732.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:03 Heat of formation + Delta-G solvation = -37.593961 kcal Electronic energy + Delta-G solvation = -35366.971369 eV Core-core repulsion = 30751.804558 eV Total energy + Delta-G solvation = -4615.166811 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.21209 -41.40354 -40.77231 -39.66265 -38.01957 -37.95629 -37.57134 -35.51188 -34.01590 -32.39372 -31.69731 -30.85570 -28.70280 -28.21564 -27.95420 -27.02379 -26.54140 -26.14221 -24.33735 -23.57689 -22.33713 -22.06948 -21.09816 -19.77751 -19.57273 -18.95315 -18.47463 -18.01170 -17.51077 -17.20002 -17.08463 -16.91182 -16.77738 -16.66801 -16.26639 -15.98924 -15.86504 -15.80931 -15.56446 -14.90594 -14.80001 -14.64181 -14.44650 -14.30216 -14.14883 -14.05769 -14.00681 -13.74763 -13.51254 -13.33261 -13.25903 -13.10301 -12.89185 -12.84476 -12.72334 -12.52302 -12.40537 -12.29416 -12.05516 -11.93213 -11.64765 -11.59559 -11.56663 -11.29215 -11.00973 -10.63951 -9.91351 -9.83414 -9.74369 -9.58149 -9.15169 -4.99617 -0.32480 0.05774 0.32754 0.48053 1.19960 1.47648 1.50521 1.77466 1.81848 2.35304 2.41202 2.73642 3.14206 3.28708 3.34598 3.46626 3.50262 3.66404 3.68998 3.70213 3.88256 3.94800 3.97029 4.06966 4.13408 4.17799 4.23879 4.27845 4.34725 4.38301 4.38972 4.46705 4.50393 4.54841 4.60987 4.62649 4.66971 4.70919 4.74019 4.76438 4.77041 4.83659 4.87410 4.93766 5.02685 5.04547 5.07694 5.10032 5.19287 5.22021 5.34207 5.34471 5.48131 5.53878 5.61170 5.71526 5.82624 6.21429 6.41234 6.43821 6.73315 6.97184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.110 3.890 4 C -0.222 4.222 5 C -0.084 4.084 6 C -0.160 4.160 7 C -0.034 4.034 8 C -0.067 4.067 9 H 0.113 0.887 10 C -0.127 4.127 11 C 0.114 3.886 12 H 0.087 0.913 13 N -0.586 5.586 14 C 0.042 3.958 15 C 0.557 3.443 16 O -0.573 6.573 17 C -0.145 4.145 18 C -0.066 4.066 19 C -0.117 4.117 20 C -0.112 4.112 21 C 0.155 3.845 22 O -0.496 6.496 23 C -0.149 4.149 24 C -0.059 4.059 25 O -0.538 6.538 26 Si 0.739 3.261 27 C -0.069 4.069 28 C -0.135 4.135 29 C -0.164 4.164 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.167 0.833 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.412 0.588 46 H 0.125 0.875 47 H 0.386 0.614 48 H -0.290 1.290 49 H -0.286 1.286 50 H 0.129 0.871 51 H 0.095 0.905 52 H 0.065 0.935 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 -4.433 -3.724 7.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.241 4.241 5 C -0.102 4.102 6 C -0.178 4.178 7 C -0.034 4.034 8 C -0.085 4.085 9 H 0.131 0.869 10 C -0.164 4.164 11 C 0.011 3.989 12 H 0.105 0.895 13 N -0.317 5.317 14 C -0.099 4.099 15 C 0.347 3.653 16 O -0.453 6.453 17 C -0.148 4.148 18 C -0.084 4.084 19 C -0.118 4.118 20 C -0.168 4.168 21 C 0.110 3.890 22 O -0.310 6.310 23 C -0.150 4.150 24 C -0.170 4.170 25 O -0.346 6.346 26 Si 0.645 3.355 27 C -0.088 4.088 28 C -0.174 4.174 29 C -0.183 4.183 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.184 0.816 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.272 0.728 46 H 0.143 0.857 47 H 0.235 0.765 48 H -0.217 1.217 49 H -0.212 1.212 50 H 0.147 0.853 51 H 0.114 0.886 52 H 0.083 0.917 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.820 -3.640 -2.694 5.924 hybrid contribution -0.563 0.338 -1.399 1.545 sum -4.383 -3.302 -4.093 6.846 Atomic orbital electron populations 1.23287 0.76688 1.05377 1.02072 1.86038 1.23238 1.27294 1.88785 1.19291 0.92855 0.84617 0.96775 1.21484 1.00912 0.92457 1.09227 1.21236 0.95021 0.97530 0.96432 1.21166 0.93788 0.98764 1.04075 1.19612 0.95454 0.91879 0.96437 1.21697 0.89863 0.99876 0.97038 0.86869 1.23485 0.96597 0.99026 0.97287 1.21994 0.83338 0.95476 0.98129 0.89521 1.47470 1.08153 1.25818 1.50238 1.22808 1.05296 0.85127 0.96638 1.18530 0.84024 0.83204 0.79540 1.90796 1.86659 1.30062 1.37808 1.19698 0.92712 0.94789 1.07573 1.21714 0.99350 0.91953 0.95380 1.20449 0.91450 0.98315 1.01591 1.20770 1.04011 0.88355 1.03709 1.18414 0.85647 0.88574 0.96407 1.84637 1.37411 1.76395 1.32544 1.20461 0.95358 0.94159 1.05032 1.24797 0.95953 1.09285 0.86950 1.86582 1.49526 1.80597 1.17921 0.93842 0.76839 0.73907 0.90952 1.21009 0.90885 1.00141 0.96721 1.23435 0.97672 0.99815 0.96477 1.20498 0.91421 0.98855 1.07492 0.91972 0.91832 0.86665 0.84352 0.84003 0.84332 0.88967 0.87399 0.88784 0.88576 0.89981 0.81599 0.89341 0.91103 0.89937 0.72814 0.85709 0.76519 1.21718 1.21249 0.85329 0.88630 0.91659 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.58 10.50 -92.42 -0.97 -2.55 16 3 C 0.11 0.48 6.69 22.51 0.15 0.63 16 4 C -0.22 -0.40 9.04 22.36 0.20 -0.19 16 5 C -0.08 0.00 10.04 22.25 0.22 0.22 16 6 C -0.16 0.09 8.53 22.28 0.19 0.28 16 7 C -0.03 0.00 5.29 -19.88 -0.11 -0.10 16 8 C -0.07 0.26 3.44 -11.02 -0.04 0.22 16 9 H 0.11 -0.70 6.07 -2.39 -0.01 -0.72 16 10 C -0.13 0.64 6.67 31.18 0.21 0.84 16 11 C 0.11 -0.04 4.25 45.58 0.19 0.15 16 12 H 0.09 0.31 7.62 -2.39 -0.02 0.29 16 13 N -0.59 0.17 3.07 -823.01 -2.52 -2.36 16 14 C 0.04 -0.33 7.21 127.77 0.92 0.59 16 15 C 0.56 3.42 7.37 86.71 0.64 4.06 16 16 O -0.57 -8.34 16.56 -3.98 -0.07 -8.40 16 17 C -0.14 -0.38 5.36 -20.08 -0.11 -0.49 16 18 C -0.07 0.18 7.02 22.50 0.16 0.34 16 19 C -0.12 0.29 5.89 -19.81 -0.12 0.18 16 20 C -0.11 0.73 9.78 71.24 0.70 1.43 16 21 C 0.16 0.02 6.66 22.63 0.15 0.17 16 22 O -0.50 0.45 11.84 -90.29 -1.07 -0.62 16 23 C -0.15 -0.22 5.27 -19.81 -0.10 -0.33 16 24 C -0.06 -0.07 2.37 71.24 0.17 0.10 16 25 O -0.54 -0.79 12.88 -148.98 -1.92 -2.71 16 26 Si 0.74 1.75 30.25 68.60 2.08 3.83 16 27 C -0.07 -0.24 8.22 22.51 0.19 -0.06 16 28 C -0.14 0.14 7.34 31.12 0.23 0.37 16 29 C -0.16 -0.45 9.65 22.37 0.22 -0.23 16 30 H 0.06 -0.25 7.65 -2.39 -0.02 -0.27 16 31 H 0.06 -0.28 7.67 -2.39 -0.02 -0.29 16 32 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.14 -0.23 6.30 -2.91 -0.02 -0.25 16 34 H 0.14 -0.57 8.06 -2.91 -0.02 -0.60 16 35 H 0.14 -0.56 6.72 -2.91 -0.02 -0.58 16 36 H 0.09 -0.64 6.32 -2.39 -0.02 -0.66 16 37 H 0.11 -0.64 6.39 -2.39 -0.02 -0.65 16 38 H 0.09 -0.96 5.58 -2.39 -0.01 -0.97 16 39 H 0.10 -0.83 4.76 -2.39 -0.01 -0.84 16 40 H 0.08 -0.88 6.87 -2.39 -0.02 -0.90 16 41 H 0.17 -1.29 5.31 -2.91 -0.02 -1.31 16 42 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.07 -0.31 7.52 -2.39 -0.02 -0.32 16 44 H 0.08 -0.69 8.08 -2.39 -0.02 -0.71 16 45 H 0.41 -3.19 9.06 -74.06 -0.67 -3.86 16 46 H 0.13 0.15 7.82 -2.39 -0.02 0.13 16 47 H 0.39 -1.56 8.70 -74.06 -0.64 -2.20 16 48 H -0.29 -2.46 7.11 99.48 0.71 -1.75 16 49 H -0.29 -1.93 6.68 99.48 0.66 -1.26 16 50 H 0.13 0.67 4.82 -2.91 -0.01 0.66 16 51 H 0.10 -0.09 7.64 -2.39 -0.02 -0.11 16 52 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 53 H 0.13 0.11 8.05 -2.91 -0.02 0.09 16 Total: 0.00 -22.54 416.23 0.37 -22.17 By element: Atomic # 1 Polarization: -18.25 SS G_CDS: -0.33 Total: -18.58 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.17 Total: 9.24 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -2.52 Total: -2.36 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -4.02 Total: -14.29 kcal Atomic # 14 Polarization: 1.75 SS G_CDS: 2.08 Total: 3.83 kcal Total: -22.54 0.37 -22.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10860584_13287732.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.426 kcal (2) G-P(sol) polarization free energy of solvation -22.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds