Wall clock time and date at job start Sat Mar 6 2021 15:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 117.00221 * 2 1 4 4 C 1.38709 * 120.05740 * 359.97438 * 3 2 1 5 5 C 1.38165 * 119.94632 * 180.02562 * 4 3 2 6 6 C 1.38244 * 120.05441 * 359.75075 * 5 4 3 7 7 C 1.38289 * 120.11099 * 0.50264 * 6 5 4 8 8 C 1.50702 * 119.97242 * 179.76566 * 7 6 5 9 9 H 1.09001 * 112.84929 * 190.92105 * 8 7 6 10 10 C 1.53771 * 113.69128 * 322.19525 * 8 7 6 11 11 C 1.53780 * 87.08261 * 139.98854 * 10 8 7 12 12 H 1.09000 * 113.69224 * 220.00727 * 11 10 8 13 13 N 1.46500 * 113.61278 * 89.11530 * 11 10 8 14 14 C 1.46499 * 120.00025 * 322.49940 * 13 11 10 15 15 C 1.34783 * 120.00112 * 142.50513 * 13 11 10 16 16 O 1.21697 * 119.99435 * 4.86920 * 15 13 11 17 17 C 1.46676 * 120.00195 * 184.86500 * 15 13 11 18 18 C 1.37868 * 126.23314 * 283.62373 * 17 15 13 19 19 C 1.50700 * 126.46300 * 359.95986 * 18 17 15 20 20 C 1.39841 * 107.08238 * 180.23513 * 18 17 15 21 21 C 1.35456 * 107.86582 * 359.75968 * 20 18 17 22 22 C 1.50695 * 125.56507 * 180.02562 * 21 20 18 23 23 O 1.42904 * 109.46949 * 119.99823 * 22 21 20 24 24 Si 1.86300 * 109.46960 * 359.97438 * 22 21 20 25 25 N 1.35528 * 108.86826 * 0.02562 * 21 20 18 26 26 C 1.53782 * 87.08107 * 334.56619 * 11 10 8 27 27 C 1.38124 * 120.05517 * 359.49472 * 7 6 5 28 28 H 1.09002 * 109.46663 * 59.99656 * 1 2 3 29 29 H 1.08997 * 109.46978 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46845 * 300.00494 * 1 2 3 31 31 H 1.08007 * 120.02667 * 0.04173 * 4 3 2 32 32 H 1.07992 * 119.97000 * 179.97438 * 5 4 3 33 33 H 1.07995 * 119.94379 * 180.25284 * 6 5 4 34 34 H 1.09001 * 113.62166 * 25.43982 * 10 8 7 35 35 H 1.09007 * 113.61503 * 254.53822 * 10 8 7 36 36 H 1.09002 * 109.47190 * 275.32042 * 14 13 11 37 37 H 1.08992 * 109.47101 * 35.32543 * 14 13 11 38 38 H 1.09009 * 109.46764 * 155.32245 * 14 13 11 39 39 H 1.09006 * 109.46903 * 270.30452 * 19 18 17 40 40 H 1.09003 * 109.46472 * 30.29811 * 19 18 17 41 41 H 1.08995 * 109.47313 * 150.29857 * 19 18 17 42 42 H 1.07999 * 126.06431 * 179.76000 * 20 18 17 43 43 H 1.08995 * 109.47212 * 239.99976 * 22 21 20 44 44 H 0.96698 * 113.99980 * 299.99441 * 23 22 21 45 45 H 1.48505 * 109.99906 * 179.97438 * 24 22 21 46 46 H 1.48492 * 110.00324 * 301.31747 * 24 22 21 47 47 H 0.97001 * 125.67607 * 179.97438 * 25 21 20 48 48 H 1.09000 * 113.61306 * 139.98052 * 26 11 10 49 49 H 1.08997 * 113.61362 * 270.88440 * 26 11 10 50 50 H 1.08004 * 120.02836 * 180.22844 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2918 2.3749 -0.0005 5 6 1.9215 3.6048 -0.0011 6 6 3.3021 3.6757 0.0041 7 6 4.0563 2.5166 -0.0006 8 6 5.5612 2.5976 -0.0002 9 1 6.0369 1.6363 -0.1945 10 6 6.1184 3.7453 -0.8587 11 6 7.1531 3.9719 0.2561 12 1 7.3510 5.0237 0.4629 13 7 8.3775 3.1849 0.0891 14 6 8.3040 1.8178 -0.4323 15 6 9.5714 3.7185 0.4154 16 8 9.6252 4.8195 0.9309 17 6 10.8057 2.9721 0.1491 18 6 11.2867 1.9058 0.8788 19 6 10.6451 1.2914 2.0961 20 6 12.4856 1.5059 0.2801 21 6 12.7081 2.3135 -0.7844 22 6 13.8911 2.2317 -1.7144 23 8 13.4341 1.9862 -3.0459 24 14 15.0100 0.8432 -1.1752 25 7 11.6932 3.2069 -0.8765 26 6 6.1380 3.3350 1.2198 27 6 3.4316 1.2847 0.0000 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2131 2.3200 -0.0003 32 1 1.3346 4.5113 -0.0019 33 1 3.7924 4.6379 0.0078 34 1 5.4225 4.5749 -0.9836 35 1 6.5564 3.4136 -1.8002 36 1 8.0908 1.1283 0.3845 37 1 7.5108 1.7552 -1.1771 38 1 9.2561 1.5528 -0.8924 39 1 11.0090 1.7950 2.9918 40 1 9.5627 1.4023 2.0313 41 1 10.8996 0.2328 2.1457 42 1 13.1212 0.6968 0.6083 43 1 14.4408 3.1725 -1.6865 44 1 12.9358 1.1636 -3.1453 45 1 16.1804 0.7517 -2.0848 46 1 15.4666 1.0711 0.2193 47 1 11.6082 3.8990 -1.5509 48 1 6.5918 2.6719 1.9564 49 1 5.4474 4.0523 1.6631 50 1 4.0211 0.3798 0.0000 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10860584_13940406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:00:56 Heat of formation + Delta-G solvation = 8.771775 kcal Electronic energy + Delta-G solvation = -31672.438187 eV Core-core repulsion = 27440.764367 eV Total energy + Delta-G solvation = -4231.673820 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.69520 -41.72727 -40.82451 -39.56631 -37.98840 -37.69210 -35.44310 -33.63331 -32.27949 -31.60737 -30.92667 -28.54620 -28.22458 -28.09202 -27.25668 -26.71157 -25.32543 -23.59411 -23.01776 -21.69904 -21.55357 -20.52540 -19.70430 -19.15651 -18.79025 -18.01990 -17.56565 -17.20867 -16.90605 -16.66817 -16.60581 -16.55560 -16.20976 -15.88080 -15.52254 -15.22467 -14.99734 -14.70807 -14.47307 -14.41199 -14.25407 -14.11461 -13.92415 -13.88727 -13.61587 -13.57340 -13.46239 -13.25423 -13.13224 -13.06947 -12.81936 -12.61687 -12.26353 -12.13761 -12.07425 -11.97684 -11.64874 -11.57456 -11.32195 -11.20571 -10.65356 -9.83598 -9.80805 -9.71277 -9.14534 -9.12290 -4.92662 0.33330 0.48765 0.70385 1.03824 1.34701 1.58873 1.75931 1.83283 2.00397 2.36192 2.48267 2.74228 3.35473 3.48323 3.54805 3.61635 3.65620 3.70999 3.88958 3.94195 4.07025 4.11845 4.16968 4.19448 4.26604 4.28723 4.35598 4.37907 4.43679 4.54395 4.55054 4.59127 4.63678 4.69999 4.72177 4.75616 4.79384 4.85573 4.87150 4.89042 4.94608 5.00158 5.09458 5.15426 5.18485 5.28620 5.35157 5.47126 5.53010 5.70598 5.76391 5.83181 5.90867 6.13249 6.35507 6.44720 6.70621 6.87062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.110 3.890 4 C -0.222 4.222 5 C -0.084 4.084 6 C -0.161 4.161 7 C -0.033 4.033 8 C -0.070 4.070 9 H 0.117 0.883 10 C -0.129 4.129 11 C 0.110 3.890 12 H 0.090 0.910 13 N -0.575 5.575 14 C 0.064 3.936 15 C 0.591 3.409 16 O -0.575 6.575 17 C -0.052 4.052 18 C -0.112 4.112 19 C -0.089 4.089 20 C -0.194 4.194 21 C 0.012 3.988 22 C -0.058 4.058 23 O -0.556 6.556 24 Si 0.816 3.184 25 N -0.514 5.514 26 C -0.132 4.132 27 C -0.163 4.163 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.062 0.938 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.168 0.832 43 H 0.105 0.895 44 H 0.399 0.601 45 H -0.297 1.297 46 H -0.286 1.286 47 H 0.422 0.578 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.839 -6.004 -2.300 7.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.065 3.935 4 C -0.241 4.241 5 C -0.102 4.102 6 C -0.179 4.179 7 C -0.033 4.033 8 C -0.088 4.088 9 H 0.135 0.865 10 C -0.167 4.167 11 C 0.006 3.994 12 H 0.109 0.891 13 N -0.306 5.306 14 C -0.077 4.077 15 C 0.379 3.621 16 O -0.454 6.454 17 C -0.167 4.167 18 C -0.120 4.120 19 C -0.146 4.146 20 C -0.218 4.218 21 C -0.105 4.105 22 C -0.167 4.167 23 O -0.364 6.364 24 Si 0.720 3.280 25 N -0.109 5.109 26 C -0.170 4.170 27 C -0.182 4.182 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.186 0.814 43 H 0.123 0.877 44 H 0.249 0.751 45 H -0.225 1.225 46 H -0.213 1.213 47 H 0.260 0.740 48 H 0.091 0.909 49 H 0.116 0.884 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.720 -5.165 -2.000 6.171 hybrid contribution -0.565 1.469 -0.164 1.583 sum -3.285 -3.696 -2.164 5.398 Atomic orbital electron populations 1.23288 0.76699 1.05375 1.02059 1.86041 1.23222 1.27269 1.88774 1.19288 0.92857 0.84611 0.96748 1.21483 1.00908 0.92456 1.09229 1.21227 0.95010 0.97528 0.96472 1.21166 0.93799 0.98765 1.04133 1.19601 0.95404 0.91880 0.96455 1.21820 0.89962 0.99945 0.97087 0.86516 1.23453 0.96798 0.99045 0.97360 1.22026 0.83246 0.95821 0.98299 0.89146 1.47491 1.04670 1.16086 1.62342 1.22251 1.04543 0.80441 1.00491 1.17431 0.83219 0.83944 0.77529 1.90840 1.87691 1.22521 1.44372 1.19816 0.95711 1.03636 0.97496 1.20010 0.97165 0.95737 0.99048 1.20329 0.99598 1.01595 0.93077 1.20759 0.99272 1.03989 0.97806 1.21222 0.93238 0.94771 1.01234 1.25100 0.97201 1.10664 0.83723 1.86475 1.76360 1.48112 1.25491 0.93035 0.76183 0.83067 0.75722 1.41739 1.17896 1.27725 1.23535 1.23414 0.97326 0.99895 0.96408 1.20503 0.91420 0.98867 1.07408 0.91882 0.86658 0.91947 0.84359 0.84056 0.84398 0.87441 0.89800 0.90577 0.88801 0.89996 0.92273 0.92012 0.88846 0.81443 0.87728 0.75051 1.22454 1.21302 0.73991 0.90868 0.88364 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.56 10.50 -92.41 -0.97 -2.53 16 3 C 0.11 0.48 6.69 22.51 0.15 0.63 16 4 C -0.22 -0.40 9.04 22.36 0.20 -0.20 16 5 C -0.08 -0.01 10.04 22.25 0.22 0.21 16 6 C -0.16 0.07 8.60 22.28 0.19 0.26 16 7 C -0.03 0.00 5.29 -19.88 -0.11 -0.10 16 8 C -0.07 0.26 3.32 -11.02 -0.04 0.22 16 9 H 0.12 -0.69 5.53 -2.39 -0.01 -0.71 16 10 C -0.13 0.51 6.67 31.12 0.21 0.72 16 11 C 0.11 0.01 4.44 45.52 0.20 0.21 16 12 H 0.09 0.41 7.27 -2.39 -0.02 0.40 16 13 N -0.58 -0.41 3.08 -824.34 -2.54 -2.95 16 14 C 0.06 -0.34 8.21 127.77 1.05 0.70 16 15 C 0.59 4.39 7.17 86.45 0.62 5.01 16 16 O -0.58 -9.45 16.62 -4.34 -0.07 -9.52 16 17 C -0.05 -0.23 5.05 40.35 0.20 -0.02 16 18 C -0.11 -0.22 5.84 -19.56 -0.11 -0.33 16 19 C -0.09 0.10 10.20 71.24 0.73 0.82 16 20 C -0.19 0.12 9.27 22.01 0.20 0.33 16 21 C 0.01 0.00 6.47 41.34 0.27 0.27 16 22 C -0.06 0.13 3.08 71.23 0.22 0.35 16 23 O -0.56 1.38 12.88 -148.98 -1.92 -0.53 16 24 Si 0.82 -3.49 30.54 68.60 2.10 -1.39 16 25 N -0.51 -1.04 6.10 -171.94 -1.05 -2.09 16 26 C -0.13 0.24 7.21 31.12 0.22 0.47 16 27 C -0.16 -0.44 9.65 22.37 0.22 -0.22 16 28 H 0.06 -0.27 7.66 -2.39 -0.02 -0.29 16 29 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 31 H 0.14 -0.23 6.30 -2.91 -0.02 -0.24 16 32 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 33 H 0.14 -0.52 6.68 -2.91 -0.02 -0.54 16 34 H 0.11 -0.53 6.33 -2.39 -0.02 -0.54 16 35 H 0.08 -0.40 7.28 -2.38 -0.02 -0.41 16 36 H 0.08 -0.55 7.46 -2.39 -0.02 -0.57 16 37 H 0.09 -0.76 5.17 -2.39 -0.01 -0.78 16 38 H 0.08 -0.41 6.45 -2.38 -0.02 -0.43 16 39 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 40 H 0.06 -0.09 7.05 -2.39 -0.02 -0.10 16 41 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.17 -0.89 6.17 -2.91 -0.02 -0.90 16 43 H 0.11 -0.05 7.96 -2.39 -0.02 -0.07 16 44 H 0.40 -4.26 8.70 -74.06 -0.64 -4.90 16 45 H -0.30 -0.86 7.11 99.48 0.71 -0.15 16 46 H -0.29 -0.37 7.11 99.48 0.71 0.33 16 47 H 0.42 0.20 8.96 -92.71 -0.83 -0.63 16 48 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.10 -0.19 7.71 -2.39 -0.02 -0.20 16 50 H 0.13 0.10 8.05 -2.91 -0.02 0.07 16 Total: 0.00 -22.30 399.00 0.87 -21.43 By element: Atomic # 1 Polarization: -12.35 SS G_CDS: -0.44 Total: -12.79 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.76 Total: 10.37 kcal Atomic # 7 Polarization: -1.45 SS G_CDS: -3.59 Total: -5.04 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -2.96 Total: -12.59 kcal Atomic # 14 Polarization: -3.49 SS G_CDS: 2.10 Total: -1.39 kcal Total: -22.30 0.87 -21.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10860584_13940406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.204 kcal (2) G-P(sol) polarization free energy of solvation -22.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds