Wall clock time and date at job start Sat Mar 6 2021 15:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35904 * 117.00462 * 2 1 4 4 C 1.38711 * 120.05229 * 359.97438 * 3 2 1 5 5 C 1.38168 * 119.93993 * 180.23530 * 4 3 2 6 6 C 1.38238 * 120.05416 * 359.46874 * 5 4 3 7 7 C 1.38288 * 120.11458 * 0.55519 * 6 5 4 8 8 C 1.50700 * 119.97258 * 179.72370 * 7 6 5 9 9 H 1.09001 * 112.85168 * 191.17758 * 8 7 6 10 10 C 1.53789 * 113.61484 * 322.47564 * 8 7 6 11 11 C 1.53777 * 87.07843 * 139.98066 * 10 8 7 12 12 H 1.08997 * 113.61844 * 220.02129 * 11 10 8 13 13 N 1.46507 * 113.61333 * 89.11875 * 11 10 8 14 14 C 1.46500 * 119.99735 * 315.34241 * 13 11 10 15 15 C 1.34777 * 120.00102 * 135.33919 * 13 11 10 16 16 O 1.21279 * 119.99887 * 359.97438 * 15 13 11 17 17 C 1.50701 * 119.99829 * 180.02562 * 15 13 11 18 18 C 1.50700 * 109.46792 * 180.02562 * 17 15 13 19 19 C 1.34861 * 125.88705 * 274.68682 * 18 17 15 20 20 C 1.40888 * 107.41464 * 179.88906 * 19 18 17 21 21 C 1.34857 * 107.41904 * 0.37686 * 20 19 18 22 22 C 1.50700 * 125.89242 * 179.80639 * 21 20 19 23 23 O 1.42891 * 109.47244 * 244.95946 * 22 21 20 24 24 Si 1.86305 * 109.46975 * 4.96028 * 22 21 20 25 25 N 1.36341 * 108.21690 * 359.77018 * 21 20 19 26 26 C 1.53781 * 87.08619 * 334.56942 * 11 10 8 27 27 C 1.38119 * 120.05220 * 359.69853 * 7 6 5 28 28 H 1.09001 * 109.47653 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47363 * 300.00925 * 1 2 3 30 30 H 1.09003 * 109.46500 * 60.00260 * 1 2 3 31 31 H 1.07996 * 120.02862 * 359.95892 * 4 3 2 32 32 H 1.07999 * 119.96836 * 179.74762 * 5 4 3 33 33 H 1.08001 * 119.94278 * 180.25322 * 6 5 4 34 34 H 1.08993 * 113.61901 * 254.53224 * 10 8 7 35 35 H 1.09002 * 113.61015 * 25.43818 * 10 8 7 36 36 H 1.09000 * 109.47464 * 83.95421 * 14 13 11 37 37 H 1.09004 * 109.46554 * 203.95489 * 14 13 11 38 38 H 1.09000 * 109.47231 * 323.94797 * 14 13 11 39 39 H 1.09002 * 109.46652 * 299.99160 * 17 15 13 40 40 H 1.08993 * 109.47368 * 60.00202 * 17 15 13 41 41 H 1.07996 * 126.28661 * 0.02562 * 19 18 17 42 42 H 1.08004 * 126.29211 * 180.12915 * 20 19 18 43 43 H 1.08998 * 109.47028 * 124.95685 * 22 21 20 44 44 H 0.96700 * 114.00555 * 59.99529 * 23 22 21 45 45 H 1.48499 * 109.99682 * 180.02562 * 24 22 21 46 46 H 1.48507 * 109.99758 * 301.31767 * 24 22 21 47 47 H 0.96999 * 125.63651 * 180.02562 * 25 21 20 48 48 H 1.08997 * 113.61523 * 270.88279 * 26 11 10 49 49 H 1.09000 * 113.69066 * 139.98854 * 26 11 10 50 50 H 1.08007 * 120.02761 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2917 2.3749 -0.0005 5 6 1.9215 3.6047 -0.0055 6 6 3.3020 3.6756 0.0013 7 6 4.0563 2.5165 0.0013 8 6 5.5611 2.5976 0.0024 9 1 6.0369 1.6364 -0.1924 10 6 6.1168 3.7469 -0.8551 11 6 7.1516 3.9734 0.2596 12 1 7.3472 5.0255 0.4667 13 7 8.3768 3.1880 0.0914 14 6 8.2947 1.7735 -0.2811 15 6 9.5794 3.7667 0.2791 16 8 9.6474 4.9378 0.5869 17 6 10.8397 2.9588 0.1055 18 6 12.0377 3.8336 0.3713 19 6 12.6440 4.6378 -0.5256 20 6 13.7137 5.2744 0.1343 21 6 13.7255 4.8287 1.4070 22 6 14.7040 5.2384 2.4775 23 8 15.4917 4.1093 2.8601 24 14 15.8182 6.5790 1.8202 25 7 12.6991 3.9442 1.5584 26 6 6.1376 3.3342 1.2230 27 6 3.4315 1.2847 0.0010 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.2132 2.3200 -0.0016 32 1 1.3346 4.5114 -0.0100 33 1 3.7924 4.6379 0.0015 34 1 6.5548 3.4168 -1.7970 35 1 5.4198 4.5758 -0.9787 36 1 8.1963 1.6877 -1.3632 37 1 9.1994 1.2593 0.0434 38 1 7.4274 1.3209 0.1997 39 1 10.8363 2.1250 0.8075 40 1 10.8882 2.5757 -0.9137 41 1 12.3601 4.7710 -1.5590 42 1 14.4007 5.9854 -0.3005 43 1 14.1588 5.6117 3.3444 44 1 16.0050 3.7244 2.1366 45 1 16.7882 6.9914 2.8662 46 1 16.5435 6.0930 0.6188 47 1 12.4761 3.4718 2.3758 48 1 5.4463 4.0502 1.6674 49 1 6.5911 2.6707 1.9593 50 1 4.0210 0.3797 0.0014 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10860584_14644196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:01:01 Heat of formation + Delta-G solvation = 14.825454 kcal Electronic energy + Delta-G solvation = -30815.937857 eV Core-core repulsion = 26584.526544 eV Total energy + Delta-G solvation = -4231.411313 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.39129 -41.81212 -40.88823 -39.63350 -38.00190 -37.80988 -35.36153 -33.09679 -32.14953 -31.92848 -31.01171 -29.38960 -28.48333 -28.08879 -26.70467 -25.89891 -24.94907 -23.59124 -22.58767 -21.52262 -21.33630 -20.80648 -19.68759 -18.96924 -18.93801 -18.03322 -17.37346 -17.19071 -16.92426 -16.79957 -16.66970 -16.57791 -16.38362 -15.81918 -15.53390 -15.40216 -14.74610 -14.64177 -14.56031 -14.42281 -14.25482 -14.06460 -14.03103 -13.90510 -13.76256 -13.50901 -13.29351 -13.26949 -13.19418 -13.09479 -12.76276 -12.62352 -12.19093 -12.15799 -12.06058 -11.83991 -11.59243 -11.51619 -11.26408 -10.84387 -10.79578 -9.80343 -9.76597 -9.62720 -9.15540 -8.97509 -4.85482 0.32525 0.47564 1.09436 1.26785 1.57331 1.66389 1.81553 1.90094 2.13915 2.34947 2.48081 2.73434 3.39034 3.43396 3.62693 3.70397 3.72734 3.79417 3.84352 3.87955 3.96464 4.05700 4.12504 4.16493 4.26678 4.28157 4.34394 4.37554 4.43353 4.48112 4.54306 4.58391 4.59558 4.64126 4.70630 4.72178 4.77198 4.79816 4.85884 4.90597 5.00772 5.03929 5.09726 5.23573 5.25120 5.28461 5.33994 5.48758 5.58169 5.73345 5.82188 5.98422 6.12579 6.34944 6.43408 6.43485 6.65800 7.15297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.110 3.890 4 C -0.223 4.223 5 C -0.085 4.085 6 C -0.162 4.162 7 C -0.034 4.034 8 C -0.074 4.074 9 H 0.123 0.877 10 C -0.132 4.132 11 C 0.113 3.887 12 H 0.086 0.914 13 N -0.595 5.595 14 C 0.051 3.949 15 C 0.511 3.489 16 O -0.574 6.574 17 C -0.064 4.064 18 C 0.033 3.967 19 C -0.199 4.199 20 C -0.201 4.201 21 C -0.017 4.017 22 C -0.061 4.061 23 O -0.552 6.552 24 Si 0.789 3.211 25 N -0.537 5.537 26 C -0.132 4.132 27 C -0.164 4.164 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.150 0.850 43 H 0.118 0.882 44 H 0.388 0.612 45 H -0.296 1.296 46 H -0.280 1.280 47 H 0.418 0.582 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 -3.529 -2.149 5.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.065 3.935 4 C -0.241 4.241 5 C -0.102 4.102 6 C -0.180 4.180 7 C -0.034 4.034 8 C -0.092 4.092 9 H 0.141 0.859 10 C -0.170 4.170 11 C 0.009 3.991 12 H 0.105 0.895 13 N -0.327 5.327 14 C -0.090 4.090 15 C 0.300 3.700 16 O -0.452 6.452 17 C -0.104 4.104 18 C -0.081 4.081 19 C -0.224 4.224 20 C -0.226 4.226 21 C -0.131 4.131 22 C -0.169 4.169 23 O -0.360 6.360 24 Si 0.692 3.308 25 N -0.132 5.132 26 C -0.171 4.171 27 C -0.183 4.183 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.237 0.763 45 H -0.223 1.223 46 H -0.206 1.206 47 H 0.256 0.744 48 H 0.112 0.888 49 H 0.093 0.907 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.409 -2.857 -1.463 4.682 hybrid contribution -0.296 -1.166 0.274 1.234 sum -3.705 -4.023 -1.189 5.597 Atomic orbital electron populations 1.23289 0.76692 1.05377 1.02075 1.86037 1.23236 1.27277 1.88785 1.19293 0.92881 0.84595 0.96753 1.21481 1.00912 0.92448 1.09269 1.21230 0.95006 0.97547 0.96464 1.21170 0.93821 0.98792 1.04173 1.19647 0.95607 0.91832 0.96317 1.21987 0.89807 1.00195 0.97220 0.85933 1.23425 0.97220 0.98681 0.97654 1.21880 0.83773 0.96033 0.97441 0.89548 1.47601 1.04430 1.12184 1.68486 1.22450 1.05298 0.79142 1.02139 1.21039 0.85449 0.87501 0.75963 1.90737 1.87312 1.18640 1.48557 1.20280 0.86126 0.96676 1.07362 1.19920 0.97720 1.04253 0.86184 1.20838 0.99498 1.01842 1.00183 1.20910 1.02836 1.05422 0.93425 1.20907 0.95370 0.99475 0.97314 1.24930 0.95743 0.96409 0.99848 1.86542 1.62451 1.46413 1.40572 0.93246 0.78230 0.83053 0.76272 1.41886 1.24291 1.35541 1.11493 1.23405 0.97456 0.99869 0.96336 1.20500 0.91409 0.98851 1.07489 0.86654 0.91938 0.91873 0.84346 0.84069 0.84541 0.90197 0.88202 0.90688 0.88475 0.89206 0.85541 0.84116 0.84189 0.83258 0.86394 0.76274 1.22338 1.20568 0.74401 0.88766 0.90672 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.58 10.50 -92.46 -0.97 -2.55 16 3 C 0.11 0.49 6.69 22.50 0.15 0.64 16 4 C -0.22 -0.45 9.04 22.37 0.20 -0.24 16 5 C -0.08 -0.04 10.04 22.25 0.22 0.18 16 6 C -0.16 0.00 8.61 22.28 0.19 0.19 16 7 C -0.03 0.00 5.29 -19.88 -0.11 -0.11 16 8 C -0.07 0.30 3.33 -11.01 -0.04 0.26 16 9 H 0.12 -0.85 5.04 -2.39 -0.01 -0.86 16 10 C -0.13 0.45 6.86 31.12 0.21 0.66 16 11 C 0.11 -0.07 4.49 45.52 0.20 0.14 16 12 H 0.09 0.41 7.17 -2.39 -0.02 0.40 16 13 N -0.59 1.37 3.09 -819.63 -2.53 -1.17 16 14 C 0.05 -0.49 8.99 127.77 1.15 0.66 16 15 C 0.51 1.32 7.67 87.66 0.67 1.99 16 16 O -0.57 -7.32 15.49 -3.03 -0.05 -7.37 16 17 C -0.06 0.24 4.70 29.10 0.14 0.37 16 18 C 0.03 0.10 5.66 41.08 0.23 0.34 16 19 C -0.20 -1.10 10.77 22.14 0.24 -0.86 16 20 C -0.20 -1.02 9.37 22.14 0.21 -0.81 16 21 C -0.02 -0.07 6.50 41.08 0.27 0.20 16 22 C -0.06 -0.11 3.08 71.24 0.22 0.10 16 23 O -0.55 -1.96 12.88 -148.98 -1.92 -3.88 16 24 Si 0.79 0.23 30.60 68.60 2.10 2.33 16 25 N -0.54 -1.59 6.07 -171.11 -1.04 -2.63 16 26 C -0.13 0.35 6.91 31.12 0.22 0.56 16 27 C -0.16 -0.44 9.65 22.36 0.22 -0.22 16 28 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.06 -0.26 7.66 -2.39 -0.02 -0.27 16 30 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 31 H 0.14 -0.20 6.30 -2.91 -0.02 -0.22 16 32 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 33 H 0.14 -0.41 6.65 -2.91 -0.02 -0.43 16 34 H 0.08 -0.30 8.09 -2.39 -0.02 -0.32 16 35 H 0.10 -0.36 6.31 -2.39 -0.02 -0.37 16 36 H 0.07 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.10 -1.32 6.23 -2.39 -0.01 -1.33 16 38 H 0.09 -0.95 4.88 -2.39 -0.01 -0.97 16 39 H 0.13 -1.17 7.42 -2.39 -0.02 -1.19 16 40 H 0.14 -1.20 8.11 -2.39 -0.02 -1.22 16 41 H 0.14 0.49 8.06 -2.91 -0.02 0.47 16 42 H 0.15 0.29 6.24 -2.91 -0.02 0.27 16 43 H 0.12 0.09 7.96 -2.39 -0.02 0.07 16 44 H 0.39 -0.67 8.70 -74.06 -0.64 -1.32 16 45 H -0.30 -1.95 7.11 99.48 0.71 -1.25 16 46 H -0.28 -1.13 7.11 99.48 0.71 -0.42 16 47 H 0.42 -0.20 8.96 -92.71 -0.83 -1.03 16 48 H 0.09 -0.19 7.72 -2.39 -0.02 -0.21 16 49 H 0.07 -0.19 8.13 -2.39 -0.02 -0.21 16 50 H 0.13 0.06 8.05 -2.91 -0.02 0.03 16 Total: 0.00 -23.74 399.98 0.85 -22.89 By element: Atomic # 1 Polarization: -12.29 SS G_CDS: -0.45 Total: -12.74 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.71 Total: 5.11 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -3.57 Total: -3.79 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -2.94 Total: -13.80 kcal Atomic # 14 Polarization: 0.23 SS G_CDS: 2.10 Total: 2.33 kcal Total: -23.74 0.85 -22.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10860584_14644196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.715 kcal (2) G-P(sol) polarization free energy of solvation -23.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds